Hi RDKitters,
Today I tried to install the RDKit and cartridge to a brand new Ubuntu
12.04 32-bit running on a Virtual Box.
I installed RDKit from trunk and it passed all the tests.
When I tried to build and use the cartridge I got into troubles, even
though I followed this to the letter:
http://code.google.com/p/rdkit/wiki/BuildingTheCartridge
First of all, it failed all the tests - Greg mentioned that it might be
normal:
georgep@george-VB:~/local/rdkit/rdkit_trunk/Code/PgSQL/rdkit$ sudo make
install
/bin/mkdir -p '/usr/lib/postgresql/9.1/lib'
/bin/mkdir -p '/usr/share/postgresql/9.1/extension'
/bin/sh
/usr/lib/postgresql/9.1/lib/pgxs/src/makefiles/../../config/install-sh -c
-m 755 rdkit.so '/usr/lib/postgresql/9.1/lib/rdkit.so'
/bin/sh
/usr/lib/postgresql/9.1/lib/pgxs/src/makefiles/../../config/install-sh -c
-m 644 ./rdkit.control '/usr/share/postgresql/9.1/extension/'
/bin/sh
/usr/lib/postgresql/9.1/lib/pgxs/src/makefiles/../../config/install-sh -c
-m 644 ./rdkit--3.1.sql '/usr/share/postgresql/9.1/extension/'
georgep@george-VB:~/local/rdkit/rdkit_trunk/Code/PgSQL/rdkit$ make
installcheck
/usr/lib/postgresql/9.1/lib/pgxs/src/makefiles/../../src/test/regress/pg_regress
--inputdir=. --psqldir='/usr/lib/postgresql/9.1/bin'
--dbname=contrib_regression rdkit-91 props btree molgist bfpgist-91 sfpgist
slfpgist fps
(using postmaster on Unix socket, default port)
============== dropping database "contrib_regression" ==============
DROP DATABASE
============== creating database "contrib_regression" ==============
CREATE DATABASE
ALTER DATABASE
============== running regression test queries ==============
test rdkit-91 ... FAILED (test process exited with exit
code 2)
test props ... FAILED
test btree ... FAILED
test molgist ... FAILED
test bfpgist-91 ... FAILED
test sfpgist ... FAILED
test slfpgist ... FAILED
test fps ... FAILED
======================
8 of 8 tests failed.
======================
Then when I tried to install the extension:
georgep@george-VB:~$ psql -c 'CREATE EXTENSION rdkit' gpdb
FATAL: failed to initialize rdkit.tanimoto_threshold to 0.5
FATAL: failed to initialize rdkit.tanimoto_threshold to 0.5
connection to server was lost
or even:
georgep@george-VB:~/local/rdkit/rdkit_trunk/Code/PgSQL/rdkit$ psql gpdb
psql (9.1.3)
Type "help" for help.
gpdb=# create extension "rdkit";
FATAL: failed to initialize rdkit.tanimoto_threshold to 0.5
FATAL: failed to initialize rdkit.tanimoto_threshold to 0.5
The connection to the server was lost. Attempting reset: Succeeded.
gpdb=# show rdkit.tanimoto_threshold;
ERROR: unrecognized configuration parameter "rdkit.tanimoto_threshold"
Any ideas would be much appreciated!
Many thanks,
George
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