Hi Jan,
Mine is exactly the same:
gcc test.c -I/usr/include/postgresql/9.1/server;./a.out
90103
So, I am back to square 1!
I am starting to get a bit desperate here, has anyone ever successfully
built the cartridge from the trunk on a plain Ubuntu 12.04?
Many thanks for your help,
George
On 30 May 2012 12:48, Jan Holst Jensen <j...@biochemfusion.com> wrote:
> On 2012-05-30 13:24, George Papadatos wrote:
>
>> Thanks to both of you.
>>
>> I do not know how to check for the PG_VERSION_NUM. I tried to edit to
>> guc.c by removing the conditional check of the PG_VERSION but with the same
>> results:
>> Adrian, is this what you meant?
>>
>> DefineCustomRealVariable(
>> "rdkit.tanimoto_threshold",
>> "Lower threshold of Tanimoto similarity",
>> "Molecules with similarity lower than threshold
>> are not similar by % operation",
>> &rdkit_tanimoto_smlar_limit,
>> 0.5,
>> 0.0,
>> 1.0,
>> PGC_USERSET,
>> 0,
>> (GucRealCheckHook)**TanimotoLimitAssign,
>> NULL,
>> NULL
>> );
>>
>> DefineCustomRealVariable(
>> "rdkit.dice_threshold",
>> "Lower threshold of Dice similarity",
>> "Molecules with similarity lower than threshold
>> are not similar by # operation",
>> &rdkit_dice_smlar_limit,
>> 0.5,
>> 0.0,
>> 1.0,
>> PGC_USERSET,
>> 0,
>> (GucRealCheckHook)**DiceLimitAssign,
>> NULL,
>> NULL
>> );
>>
>> Regards,
>>
>> George
>>
>
> Hi George,
>
> I just tried the same on my VM, with no change for the better either. My
> version of guc.c now looks like this:
>
> static void
> initRDKitGUC()
> {
> if (rdkit_guc_inited)
> return;
>
>
> DefineCustomRealVariable(
> "rdkit.tanimoto_threshold",
> "Lower threshold of Tanimoto similarity",
> "Molecules with similarity lower than threshold
> are not similar by % operation",
> &rdkit_tanimoto_smlar_limit,
> 0.5,
> 0.0,
> 1.0,
> PGC_USERSET,
> 0,
> //if PG_VERSION_NUM >= 90100
> (GucRealCheckHook)**TanimotoLimitAssign,
> NULL,
> //else
> // TanimotoLimitAssign,
> //endif
>
> NULL
> );
>
> DefineCustomRealVariable(
> "rdkit.dice_threshold",
> "Lower threshold of Dice similarity",
> "Molecules with similarity lower than threshold
> are not similar by # operation",
> &rdkit_dice_smlar_limit,
> 0.5,
> 0.0,
> 1.0,
> PGC_USERSET,
> 0,
> //if PG_VERSION_NUM >= 90100
> (GucRealCheckHook)**DiceLimitAssign,
> NULL,
> //else
> // DiceLimitAssign,
> //endif
> NULL
> );
>
> rdkit_guc_inited = true;
> }
>
> Did a cartridge "make clean", "make", "sudo make install", and it still
> fails for me with
>
> postgres=# create extension rdkit;
>
> FATAL: failed to initialize rdkit.tanimoto_threshold to 0.5
> FATAL: failed to initialize rdkit.tanimoto_threshold to 0.5
> The connection to the server was lost. Attempting reset: Succeeded.
> postgres=#
>
> Cheers
> -- Jan
>
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