On 2012-05-30 13:24, George Papadatos wrote:
> Thanks to both of you.
>
> I do not know how to check for the PG_VERSION_NUM. I tried to edit to
> guc.c by removing the conditional check of the PG_VERSION but with the
> same results:
> Adrian, is this what you meant?
>
> DefineCustomRealVariable(
> "rdkit.tanimoto_threshold",
> "Lower threshold of Tanimoto similarity",
> "Molecules with similarity lower than
> threshold are not similar by % operation",
> &rdkit_tanimoto_smlar_limit,
> 0.5,
> 0.0,
> 1.0,
> PGC_USERSET,
> 0,
> (GucRealCheckHook)TanimotoLimitAssign,
> NULL,
> NULL
> );
>
> DefineCustomRealVariable(
> "rdkit.dice_threshold",
> "Lower threshold of Dice similarity",
> "Molecules with similarity lower than
> threshold are not similar by # operation",
> &rdkit_dice_smlar_limit,
> 0.5,
> 0.0,
> 1.0,
> PGC_USERSET,
> 0,
> (GucRealCheckHook)DiceLimitAssign,
> NULL,
> NULL
> );
>
> Regards,
>
> George
Hi George,
I just tried the same on my VM, with no change for the better either. My
version of guc.c now looks like this:
static void
initRDKitGUC()
{
if (rdkit_guc_inited)
return;
DefineCustomRealVariable(
"rdkit.tanimoto_threshold",
"Lower threshold of Tanimoto similarity",
"Molecules with similarity lower than
threshold are not similar by % operation",
&rdkit_tanimoto_smlar_limit,
0.5,
0.0,
1.0,
PGC_USERSET,
0,
//if PG_VERSION_NUM >= 90100
(GucRealCheckHook)TanimotoLimitAssign,
NULL,
//else
// TanimotoLimitAssign,
//endif
NULL
);
DefineCustomRealVariable(
"rdkit.dice_threshold",
"Lower threshold of Dice similarity",
"Molecules with similarity lower than
threshold are not similar by # operation",
&rdkit_dice_smlar_limit,
0.5,
0.0,
1.0,
PGC_USERSET,
0,
//if PG_VERSION_NUM >= 90100
(GucRealCheckHook)DiceLimitAssign,
NULL,
//else
// DiceLimitAssign,
//endif
NULL
);
rdkit_guc_inited = true;
}
Did a cartridge "make clean", "make", "sudo make install", and it still
fails for me with
postgres=# create extension rdkit;
FATAL: failed to initialize rdkit.tanimoto_threshold to 0.5
FATAL: failed to initialize rdkit.tanimoto_threshold to 0.5
The connection to the server was lost. Attempting reset: Succeeded.
postgres=#
Cheers
-- Jan
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