I was also able to do this build. I will repeat the process this
evening and take notes as I do so. I'll post either this evening or
first thing tomorrow morning.
-greg
On Wed, May 30, 2012 at 3:26 PM, Adrian Schreyer <ams...@cam.ac.uk> wrote:
> Yes, I could build and install the cartridge without problems
> (Release_2012.03.1) on 12.04.
>
> On Wed, May 30, 2012 at 2:23 PM, George Papadatos <gpapada...@gmail.com>
> wrote:
>> Hi Jan,
>>
>> Mine is exactly the same:
>> gcc test.c -I/usr/include/postgresql/9.1/server;./a.out
>> 90103
>>
>> So, I am back to square 1!
>>
>> I am starting to get a bit desperate here, has anyone ever successfully
>> built the cartridge from the trunk on a plain Ubuntu 12.04?
>>
>> Many thanks for your help,
>>
>> George
>>
>>
>> On 30 May 2012 12:48, Jan Holst Jensen <j...@biochemfusion.com> wrote:
>>>
>>> On 2012-05-30 13:24, George Papadatos wrote:
>>>>
>>>> Thanks to both of you.
>>>>
>>>> I do not know how to check for the PG_VERSION_NUM. I tried to edit to
>>>> guc.c by removing the conditional check of the PG_VERSION but with the same
>>>> results:
>>>> Adrian, is this what you meant?
>>>>
>>>> DefineCustomRealVariable(
>>>> "rdkit.tanimoto_threshold",
>>>> "Lower threshold of Tanimoto similarity",
>>>> "Molecules with similarity lower than threshold
>>>> are not similar by % operation",
>>>> &rdkit_tanimoto_smlar_limit,
>>>> 0.5,
>>>> 0.0,
>>>> 1.0,
>>>> PGC_USERSET,
>>>> 0,
>>>> (GucRealCheckHook)TanimotoLimitAssign,
>>>> NULL,
>>>> NULL
>>>> );
>>>>
>>>> DefineCustomRealVariable(
>>>> "rdkit.dice_threshold",
>>>> "Lower threshold of Dice similarity",
>>>> "Molecules with similarity lower than threshold
>>>> are not similar by # operation",
>>>> &rdkit_dice_smlar_limit,
>>>> 0.5,
>>>> 0.0,
>>>> 1.0,
>>>> PGC_USERSET,
>>>> 0,
>>>> (GucRealCheckHook)DiceLimitAssign,
>>>> NULL,
>>>> NULL
>>>> );
>>>>
>>>> Regards,
>>>>
>>>> George
>>>
>>>
>>> Hi George,
>>>
>>> I just tried the same on my VM, with no change for the better either. My
>>> version of guc.c now looks like this:
>>>
>>> static void
>>> initRDKitGUC()
>>> {
>>> if (rdkit_guc_inited)
>>> return;
>>>
>>>
>>> DefineCustomRealVariable(
>>> "rdkit.tanimoto_threshold",
>>> "Lower threshold of Tanimoto similarity",
>>> "Molecules with similarity lower than threshold
>>> are not similar by % operation",
>>> &rdkit_tanimoto_smlar_limit,
>>> 0.5,
>>> 0.0,
>>> 1.0,
>>> PGC_USERSET,
>>> 0,
>>> //if PG_VERSION_NUM >= 90100
>>> (GucRealCheckHook)TanimotoLimitAssign,
>>> NULL,
>>> //else
>>> // TanimotoLimitAssign,
>>> //endif
>>>
>>> NULL
>>> );
>>>
>>> DefineCustomRealVariable(
>>> "rdkit.dice_threshold",
>>> "Lower threshold of Dice similarity",
>>> "Molecules with similarity lower than threshold
>>> are not similar by # operation",
>>> &rdkit_dice_smlar_limit,
>>> 0.5,
>>> 0.0,
>>> 1.0,
>>> PGC_USERSET,
>>> 0,
>>> //if PG_VERSION_NUM >= 90100
>>> (GucRealCheckHook)DiceLimitAssign,
>>> NULL,
>>> //else
>>> // DiceLimitAssign,
>>> //endif
>>> NULL
>>> );
>>>
>>> rdkit_guc_inited = true;
>>> }
>>>
>>> Did a cartridge "make clean", "make", "sudo make install", and it still
>>> fails for me with
>>>
>>> postgres=# create extension rdkit;
>>>
>>> FATAL: failed to initialize rdkit.tanimoto_threshold to 0.5
>>> FATAL: failed to initialize rdkit.tanimoto_threshold to 0.5
>>> The connection to the server was lost. Attempting reset: Succeeded.
>>> postgres=#
>>>
>>> Cheers
>>> -- Jan
>>
>>
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