Hi Paul, That looks like some residual of the horrible problems caused by some conda changes that happened last year but that were fixed. I would guess that using a reasonably up-to-date version of conda along with the conda-forge version of the RDKit with either python 3.6 or 3.7 should work fine. Please create a new environment and give that a try to see if it helps. If there are problems, you may want to make sure that your PYTHONPATH and DYLD_FALLBACK_LIBRARY_PATH don't have anything suspicious in them.
-greg On Thu, Feb 7, 2019 at 12:38 PM Czodrowski, Paul < paul.czodrow...@tu-dortmund.de> wrote: > Dear Taka, > > > > I’m facing trouble with Python3.6 and RDKit on Mac, see here: > https://sourceforge.net/p/rdkit/mailman/message/36415085/ > > > > Therefore, I’m unfortunately restricted to stick to Python3.5 > > > > I just tried out the conda-forge, but here rdkit is still in the 2018-03 > version: > > rdkit: 2018.03.3.0-py35h04f5b5a_1 rdkit --> > 2018.03.4-py35h557c172_0 conda-forge > > > > > > Cheers, > > Paul > > > > *Von: *Taka Seri <serit...@gmail.com> > *Datum: *Donnerstag, 7. Februar 2019 um 12:43 > *An: *"Czodrowski, Paul" <paul.czodrow...@tu-dortmund.de> > *Cc: *"rdkit-discuss@lists.sourceforge.net" < > rdkit-discuss@lists.sourceforge.net> > *Betreff: *Re: [Rdkit-discuss] conda install rdkit > > > > Dear Paul, > > > > Current version of rdkit is provided for python3.6 and 2.7 from anaconda > "rdkit" and "conda-forge" channel. > > https://anaconda.org/rdkit/rdkit/files?version=2018.09.1.0 > > https://anaconda.org/conda-forge/rdkit/files?version=2018.09.1 > > i recommend you to make python3.6 environment for using newest version of > rdkit if you don't have a specific reason to use python3.5. > > > > Kind regards, > > > > Taka > > > > 2019年2月7日(木) 20:06 Czodrowski, Paul <paul.czodrow...@tu-dortmund.de>: > > Dear RDKitters, > > > > in my python3.5 conda environment on macOS, I’m running rdkit version > 2018.03.3.0. I would like to update it to 2018.09, but simply “conda update > rdkit” or “conda update -c rdkit rdkit” does not help. > > > > Any help/comment would be highly appreciated. > > > > > > Cheers, > > Paul > > *Wichtiger Hinweis: Die Information in dieser E-Mail ist vertraulich. Sie > ist ausschließlich für den Adressaten bestimmt. Sollten Sie nicht der für > diese E-Mail bestimmte Adressat sein, unterrichten Sie bitte den Absender > und vernichten Sie diese Mail. Vielen Dank. * > > > * Unbeschadet der Korrespondenz per E-Mail, sind unsere Erklärungen > ausschließlich final rechtsverbindlich, wenn sie in herkömmlicher > Schriftform (mit eigenhändiger Unterschrift) oder durch Übermittlung eines > solchen Schriftstücks per Telefax erfolgen. Important note: The information > included in this e-mail is confidential. It is solely intended for the > recipient. If you are not the intended recipient of this e-mail please > contact the sender and delete this message. Thank you. Without prejudice of > e-mail correspondence, our statements are only legally binding when they > are made in the conventional written form (with personal signature) or when > such documents are sent by fax. * > > _______________________________________________ > Rdkit-discuss mailing list > Rdkit-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss > > > > > *Wichtiger Hinweis: Die Information in dieser E-Mail ist vertraulich. Sie > ist ausschließlich für den Adressaten bestimmt. Sollten Sie nicht der für > diese E-Mail bestimmte Adressat sein, unterrichten Sie bitte den Absender > und vernichten Sie diese Mail. Vielen Dank. Unbeschadet der Korrespondenz > per E-Mail, sind unsere Erklärungen ausschließlich final rechtsverbindlich, > wenn sie in herkömmlicher Schriftform (mit eigenhändiger Unterschrift) oder > durch Übermittlung eines solchen Schriftstücks per Telefax erfolgen. > Important note: The information included in this e-mail is confidential. It > is solely intended for the recipient. If you are not the intended recipient > of this e-mail please contact the sender and delete this message. Thank > you. Without prejudice of e-mail correspondence, our statements are only > legally binding when they are made in the conventional written form (with > personal signature) or when such documents are sent by fax. * > _______________________________________________ > Rdkit-discuss mailing list > Rdkit-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss >
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