I've been running the conda version with Python 3.6.6 on a couple of Macs with no issues.
Pat On Thu, Feb 7, 2019 at 8:34 AM Greg Landrum <greg.land...@gmail.com> wrote: > Hi Paul, > > That looks like some residual of the horrible problems caused by some > conda changes that happened last year but that were fixed. I would guess > that using a reasonably up-to-date version of conda along with the > conda-forge version of the RDKit with either python 3.6 or 3.7 should work > fine. > Please create a new environment and give that a try to see if it helps. If > there are problems, you may want to make sure that your PYTHONPATH and > DYLD_FALLBACK_LIBRARY_PATH don't have anything suspicious in them. > > -greg > > > > On Thu, Feb 7, 2019 at 12:38 PM Czodrowski, Paul < > paul.czodrow...@tu-dortmund.de> wrote: > >> Dear Taka, >> >> >> >> I’m facing trouble with Python3.6 and RDKit on Mac, see here: >> https://sourceforge.net/p/rdkit/mailman/message/36415085/ >> >> >> >> Therefore, I’m unfortunately restricted to stick to Python3.5 >> >> >> >> I just tried out the conda-forge, but here rdkit is still in the 2018-03 >> version: >> >> rdkit: 2018.03.3.0-py35h04f5b5a_1 rdkit --> >> 2018.03.4-py35h557c172_0 conda-forge >> >> >> >> >> >> Cheers, >> >> Paul >> >> >> >> *Von: *Taka Seri <serit...@gmail.com> >> *Datum: *Donnerstag, 7. Februar 2019 um 12:43 >> *An: *"Czodrowski, Paul" <paul.czodrow...@tu-dortmund.de> >> *Cc: *"rdkit-discuss@lists.sourceforge.net" < >> rdkit-discuss@lists.sourceforge.net> >> *Betreff: *Re: [Rdkit-discuss] conda install rdkit >> >> >> >> Dear Paul, >> >> >> >> Current version of rdkit is provided for python3.6 and 2.7 from anaconda >> "rdkit" and "conda-forge" channel. >> >> https://anaconda.org/rdkit/rdkit/files?version=2018.09.1.0 >> >> https://anaconda.org/conda-forge/rdkit/files?version=2018.09.1 >> >> i recommend you to make python3.6 environment for using newest version of >> rdkit if you don't have a specific reason to use python3.5. >> >> >> >> Kind regards, >> >> >> >> Taka >> >> >> >> 2019年2月7日(木) 20:06 Czodrowski, Paul <paul.czodrow...@tu-dortmund.de>: >> >> Dear RDKitters, >> >> >> >> in my python3.5 conda environment on macOS, I’m running rdkit version >> 2018.03.3.0. I would like to update it to 2018.09, but simply “conda update >> rdkit” or “conda update -c rdkit rdkit” does not help. >> >> >> >> Any help/comment would be highly appreciated. >> >> >> >> >> >> Cheers, >> >> Paul >> >> *Wichtiger Hinweis: Die Information in dieser E-Mail ist vertraulich. Sie >> ist ausschließlich für den Adressaten bestimmt. Sollten Sie nicht der für >> diese E-Mail bestimmte Adressat sein, unterrichten Sie bitte den Absender >> und vernichten Sie diese Mail. Vielen Dank. * >> >> >> * Unbeschadet der Korrespondenz per E-Mail, sind unsere Erklärungen >> ausschließlich final rechtsverbindlich, wenn sie in herkömmlicher >> Schriftform (mit eigenhändiger Unterschrift) oder durch Übermittlung eines >> solchen Schriftstücks per Telefax erfolgen. Important note: The information >> included in this e-mail is confidential. It is solely intended for the >> recipient. If you are not the intended recipient of this e-mail please >> contact the sender and delete this message. Thank you. Without prejudice of >> e-mail correspondence, our statements are only legally binding when they >> are made in the conventional written form (with personal signature) or when >> such documents are sent by fax. * >> >> _______________________________________________ >> Rdkit-discuss mailing list >> Rdkit-discuss@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/rdkit-discuss >> >> >> >> >> *Wichtiger Hinweis: Die Information in dieser E-Mail ist vertraulich. Sie >> ist ausschließlich für den Adressaten bestimmt. Sollten Sie nicht der für >> diese E-Mail bestimmte Adressat sein, unterrichten Sie bitte den Absender >> und vernichten Sie diese Mail. Vielen Dank. Unbeschadet der Korrespondenz >> per E-Mail, sind unsere Erklärungen ausschließlich final rechtsverbindlich, >> wenn sie in herkömmlicher Schriftform (mit eigenhändiger Unterschrift) oder >> durch Übermittlung eines solchen Schriftstücks per Telefax erfolgen. >> Important note: The information included in this e-mail is confidential. It >> is solely intended for the recipient. If you are not the intended recipient >> of this e-mail please contact the sender and delete this message. Thank >> you. Without prejudice of e-mail correspondence, our statements are only >> legally binding when they are made in the conventional written form (with >> personal signature) or when such documents are sent by fax. * >> _______________________________________________ >> Rdkit-discuss mailing list >> Rdkit-discuss@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/rdkit-discuss >> > _______________________________________________ > Rdkit-discuss mailing list > Rdkit-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss >
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