one source of trouble might be your
LD_LIBRARY_PATH=/usr/local/lib:/mnt/g/public_html/scripts:
setting. Build systems are usually ignoring it, linking with "correct"
libraries,
but at runtime (e.g., while importing a Python module using libraries)
this might result in picking a wrong library.
On Sat, Feb 4, 2023 at 3:14 PM Dima Pasechnik <[email protected]> wrote:
>
> On Sat, Feb 4, 2023 at 1:51 PM 'Nasser M. Abbasi' via sage-release
> <[email protected]> wrote:
> >
> > "Was it an incremental build. If so,
> > make distclean
> > and
> > build again from scratch."
> >
> > It was not an incremental build. I extracted the gzip file and did the
> > steps I showed. So I do not need to do "make distclean" since everything is
> > new.
> >
> > But I repeated now everything again using "make distclean" and got same
> > error.
> >
> > "Probably the problem is linking with openblas. Do you have a number of
> > openblas versions accessible to the linker?"
> >
> > I have no idea. What command should I use to check?
>
> run
>
> ldd
> /home/me/TMP/sage-9.8.rc0/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/scipy/special/_ufuncs.cpython-310-x86_64-linux-gnu.so
>
> Post its output
> - there should be an openblas mentioned, the question is which one.
>
> As far as fpylll is concerned, you've hit the bug fixed in not yet merged
> https://trac.sagemath.org/ticket/34940
>
> You should add fpylll at the end of the line in
>
> build/pkgs/sagemath_doc_html/dependencies
>
> and run ./configure and make again
>
>
>
>
> >
> > I am just following the instruction to download and install sagemath.
> >
> > I have giac and maxima and fricas and texlive already installed on this
> > virtual box already. I also have sagemath 9.7 installed in different folder.
> >
> > --Nasser
> >
> >
> > On Saturday, February 4, 2023 at 5:27:59 AM UTC-6 Dima Pasechnik wrote:
> >>
> >> Hello,
> >> Was it an incremental build. If so,
> >> make distclean
> >> and
> >> build again from scratch.
> >>
> >> Anyhow, if you look in your istall.log you'll see problems with a number
> >> of packages, e.g. fpylll, scipy.
> >>
> >> [sagemath_doc_html-none] [manifolds] ImportError:
> >> /home/me/TMP/sage-9.8.rc0/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/scipy/special/_ufuncs.cpython-310-x86_64-linux-gnu.so:
> >> undefined symbol: dstevr_
> >>
> >> Probably the problem is linking with openblas. Do you have a number of
> >> openblas versions accessible to the linker?
> >>
> >>
> >>
> >> By the way,
> >> what are you trying to achieve with exporting
> >> MAXIMA ?
> >> Sage does not support using external Maxima at the moment,
> >>
> >>
> >>
> >>
> >> On Sat, 4 Feb 2023, 08:12 'Nasser M. Abbasi' via sage-release,
> >> <[email protected]> wrote:
> >>>
> >>> I get this error on Linux virtual box running
> >>>
> >>> lsb_release -a
> >>> LSB Version: n/a
> >>> Distributor ID: ManjaroLinux
> >>> Description: Manjaro Linux
> >>> Release: 22.0.0
> >>> Codename: Sikaris
> >>>
> >>> After extracting the gzip file, these are the commands I did
> >>>
> >>> unset SAGE_ROOT
> >>> unset SAGE_LOCAL
> >>> export GIAC=/usr/local/bin/giac
> >>> export MAXIMA=/usr/local/bin/maxima
> >>> ./configure --with-system-python=no
> >>> make
> >>>
> >>> At the end I see
> >>>
> >>> -------------
> >>> sagemath_doc_html-none] File
> >>> "/home/me/TMP/sage-9.8.rc0/src/sage_docbuild/sphinxbuild.py", line 263,
> >>> in raise_errors
> >>> [sagemath_doc_html-none] raise OSError(self._error)
> >>> [sagemath_doc_html-none] OSError:
> >>> /home/me/TMP/sage-9.8.rc0/src/sage/manifolds/chart.py:docstring of
> >>> sage.manifolds.chart.RealChart.plot:104: WARNING: Exception occurred in
> >>> plotting chart-1
> >>> [sagemath_doc_html-none]
> >>> [sagemath_doc_html-none] Note: incremental documentation builds
> >>> sometimes cause spurious
> >>> [sagemath_doc_html-none] error messages. To be certain that these are
> >>> real errors, run
> >>> [sagemath_doc_html-none] "make doc-clean doc-uninstall" first and try
> >>> again.
> >>> [sagemath_doc_html-none] make[6]: *** [Makefile:28:
> >>> doc-inventory--reference-manifolds] Error 1
> >>> [sagemath_doc_html-none] make[5]: *** [Makefile:45:
> >>> doc-inventory-reference] Error 2
> >>> make[4]: *** [Makefile:3262: sagemath_doc_html-SAGE_DOCS-no-deps] Error 2
> >>> make[3]: *** [Makefile:3262:
> >>> /home/me/TMP/sage-9.8.rc0/local/var/lib/sage/installed/sagemath_doc_html-none]
> >>> Error 2
> >>> make[2]: *** [Makefile:2766: all-start] Error 2
> >>> make[2]: Leaving directory '/home/me/TMP/sage-9.8.rc0/build/make'
> >>>
> >>> real 71m30.833s
> >>> user 103m7.355s
> >>> sys 5m48.306s
> >>> ***************************************************************
> >>> Error building Sage.
> >>>
> >>> The following package(s) may have failed to build (not necessarily
> >>> during this run of 'make all-start'):
> >>>
> >>> It is safe to delete any log files and build directories, but they
> >>> contain information that is helpful for debugging build problems.
> >>> WARNING: If you now run 'make' again, the build directory of the
> >>> same version of the package will, by default, be deleted. Set the
> >>> environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this.
> >>> ----------------------------
> >>>
> >>> The following folder contains config.log and install.log files
> >>>
> >>> Thank you
> >>> --Nasser
> >>>
> >>>
> >>>
> >>>
> >>>
> >>>
> >>> On Friday, February 3, 2023 at 3:40:20 AM UTC-6 Dima Pasechnik wrote:
> >>>>
> >>>> On Fri, Feb 3, 2023 at 7:33 AM Sébastien Labbé <[email protected]> wrote:
> >>>> >
> >>>> >
> >>>> >
> >>>> > On Thursday, February 2, 2023 at 7:37:27 PM UTC+1 [email protected]
> >>>> > wrote:
> >>>> > On Thursday, February 2, 2023 at 9:30:30 AM UTC-8 Sébastien Labbé
> >>>> > wrote:
> >>>> > ./bootstrap: 9: m4: Permission denied
> >>>> > make: *** [Makefile:365 : configure] Erreur 1
> >>>> >
> >>>> > Do you have "." in PATH?
> >>>> >
> >>>> >
> >>>> > No
> >>>> >
> >>>> > What does "which m4" say?
> >>>> >
> >>>> >
> >>>> > It returns nothing! Thanks for the hint. I found the problem: when
> >>>> > reading the sage README to install sage from scratch on this new
> >>>> > machine, I installed the basic stuff as follows:
> >>>> >
> >>>> > $ sudo apt install gcc gfortran g++ make m4 perl ranlib tar bc
> >>>> > [...]
> >>>> > E: Impossible de trouver le paquet ranlib
> >>>> >
> >>>> > But this returned an error on ranlib and I assumed it had installed
> >>>> > the other packages in the list but no, it did not (gcc, gfortran, etc.
> >>>> > were not installed as well).
> >>>> >
> >>>> > Is ranlib really needed for sage? Can we remove it from the README?
> >>>>
> >>>> ranlib is a standard tool, and is used by various build systems. On
> >>>> Debian it's a part of binutils package.
> >>>>
> >>>> README is not platform-specific, and it does not tell you to install
> >>>> *package* called ranlib.
> >>>> However, we should add there an advice to look for what packages to
> >>>> install in
> >>>> build/pkgs/_prereq/distros/
> >>>> (e.g. for Debian it's in build/pkgs/_prereq/distros/debian.txt)
> >>>>
> >>>> (Once our GitHub is live in few days, it's a very quick PR to do :-))
> >>>>
> >>>>
> >>>>
> >>>> >
> >>>> >
> >>>> >
> >>>> > --
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> >>>> > https://groups.google.com/d/msgid/sage-release/d6aecaee-279a-45f8-a645-36483d72a382n%40googlegroups.com.
> >>>
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> >
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