Here is the output for the new command you posted
>ldd
local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/numpy/core/_multiarray_umath.cpython-310-x86_64-linux-gnu.so
linux-vdso.so.1 (0x00007ffd883d4000)
libcblas.so.3 => /usr/lib/libcblas.so.3 (0x00007f25a6532000)
libopenblas.so.3 => /usr/lib/libopenblas.so.3 (0x00007f25a5260000)
libm.so.6 => /usr/lib/libm.so.6 (0x00007f25a5178000)
libc.so.6 => /usr/lib/libc.so.6 (0x00007f25a4f91000)
/usr/lib64/ld-linux-x86-64.so.2 (0x00007f25a6a5b000)
libgomp.so.1 => /usr/lib/libgomp.so.1 (0x00007f25a4f48000)
libgcc_s.so.1 => /usr/lib/libgcc_s.so.1 (0x00007f25a4f28000)
>
I've also put in same folder here <https://12000.org/tmp/sagemath_logs/> a
file called log_folders.tar.gz which is backup of the logs/ folder in my
build tree of 9.8 rc0 so it will have the logs you asked for.
any other information needed please let me know.
--Nasser
On Sunday, February 5, 2023 at 4:17:44 AM UTC-6 Dima Pasechnik wrote:
> On Sun, Feb 5, 2023 at 9:58 AM Dima Pasechnik <[email protected]> wrote:
> >
> > On Sun, Feb 5, 2023 at 9:04 AM 'Nasser M. Abbasi' via sage-release
> > <[email protected]> wrote:
> > >
> > >
> > > Here is the output
> > >
> > > >ldd
> /home/me/TMP/sage-9.8.rc0/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/scipy/special/_
> ufuncs.cpython-310-x86_64-linux-gnu.so
> > > linux-vdso.so.1 (0x00007ffc53be9000)
> > > libgfortran.so.5 => /usr/lib/libgfortran.so.5 (0x00007fc232878000)
> > > libm.so.6 => /usr/lib/libm.so.6 (0x00007fc232790000)
> > > libmvec.so.1 => /usr/lib/libmvec.so.1 (0x00007fc232696000)
> > > libgcc_s.so.1 => /usr/lib/libgcc_s.so.1 (0x00007fc232676000)
> > > libc.so.6 => /usr/lib/libc.so.6 (0x00007fc23248f000)
> > > libquadmath.so.0 => /usr/lib/../lib/libquadmath.so.0
> (0x00007fc232444000)
> > > /usr/lib64/ld-linux-x86-64.so.2 (0x00007fc232ce1000)
> >
> > here is how it looks on a non-broken installation.
> >
> > $ ldd
> local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/scipy/special/_
> ufuncs.cpython-310-x86_64-linux-gnu.so
> > linux-vdso.so.1 (0x00007ffe6b935000)
> > libopenblas.so.0 => /lib64/libopenblas.so.0 (0x00007fe561400000)
> > libgfortran.so.5 => /lib64/libgfortran.so.5 (0x00007fe561000000)
> > libm.so.6 => /lib64/libm.so.6 (0x00007fe563865000)
> > libmvec.so.1 => /lib64/libmvec.so.1 (0x00007fe561303000)
> > libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007fe563845000)
> > libc.so.6 => /lib64/libc.so.6 (0x00007fe560c00000)
> > libquadmath.so.0 => /lib64/libquadmath.so.0 (0x00007fe560fb8000)
> > /lib64/ld-linux-x86-64.so.2 (0x00007fe563ad3000)
> >
> > As you see, in your case libopenblas.so is not there, and you have an
> > error due to this.
> > Why scipy builds such a broken module, I don't know. I'd say it's a
> scipy bug.
> >
> > Please post logs/pkgs/numpy* and logs/pkgs/scipy*
>
> please also check that
>
> ldd
> local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/numpy/core/_
> multiarray_umath.cpython-310-x86_64-linux-gnu.so
>
> has openblas in its output.
>
> >
> >
> > > >
> > >
> > > "You should add fpylll at the end of the line in
> > >
> > > build/pkgs/sagemath_doc_html/dependencies
> > >
> > > and run ./configure and make again"
> > >
> > > Ok thanks. Will give this a try.
> > >
> > > "sage in a different directory which is in your PATH typically breaks
> things"
> > >
> > > but it is NOT in the path. This is the reason I do
> > >
> > > unset SAGE_ROOT
> > > unset SAGE_LOCAL
> > >
> > > before building any new release. I make sure current installed
> sagemath (in different folder) is not visible.
> > >
> > > --Nasser
> > >
> > > On Saturday, February 4, 2023 at 9:15:14 AM UTC-6 Dima Pasechnik wrote:
> > >>
> > >> On Sat, Feb 4, 2023 at 1:51 PM 'Nasser M. Abbasi' via sage-release
> > >> <[email protected]> wrote:
> > >> >
> > >> > "Was it an incremental build. If so,
> > >> > make distclean
> > >> > and
> > >> > build again from scratch."
> > >> >
> > >> > It was not an incremental build. I extracted the gzip file and did
> the steps I showed. So I do not need to do "make distclean" since
> everything is new.
> > >> >
> > >> > But I repeated now everything again using "make distclean" and got
> same error.
> > >> >
> > >> > "Probably the problem is linking with openblas. Do you have a
> number of openblas versions accessible to the linker?"
> > >> >
> > >> > I have no idea. What command should I use to check?
> > >>
> > >> run
> > >>
> > >> ldd
> /home/me/TMP/sage-9.8.rc0/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/scipy/special/_
> ufuncs.cpython-310-x86_64-linux-gnu.so
> > >>
> > >> Post its output
> > >> - there should be an openblas mentioned, the question is which one.
> > >>
> > >> As far as fpylll is concerned, you've hit the bug fixed in not yet
> merged
> > >> https://trac.sagemath.org/ticket/34940
> > >>
> > >> You should add fpylll at the end of the line in
> > >>
> > >> build/pkgs/sagemath_doc_html/dependencies
> > >>
> > >> and run ./configure and make again
> > >>
> > >>
> > >>
> > >>
> > >> >
> > >> > I am just following the instruction to download and install
> sagemath.
> > >> >
> > >> > I have giac and maxima and fricas and texlive already installed on
> this virtual box already. I also have sagemath 9.7 installed in different
> folder.
> > >> >
> > >> > --Nasser
> > >> >
> > >> >
> > >> > On Saturday, February 4, 2023 at 5:27:59 AM UTC-6 Dima Pasechnik
> wrote:
> > >> >>
> > >> >> Hello,
> > >> >> Was it an incremental build. If so,
> > >> >> make distclean
> > >> >> and
> > >> >> build again from scratch.
> > >> >>
> > >> >> Anyhow, if you look in your istall.log you'll see problems with a
> number of packages, e.g. fpylll, scipy.
> > >> >>
> > >> >> [sagemath_doc_html-none] [manifolds] ImportError:
> /home/me/TMP/sage-9.8.rc0/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/scipy/special/_
> ufuncs.cpython-310-x86_64-linux-gnu.so: undefined symbol: dstevr_
> > >> >>
> > >> >> Probably the problem is linking with openblas. Do you have a
> number of openblas versions accessible to the linker?
> > >> >>
> > >> >>
> > >> >>
> > >> >> By the way,
> > >> >> what are you trying to achieve with exporting
> > >> >> MAXIMA ?
> > >> >> Sage does not support using external Maxima at the moment,
> > >> >>
> > >> >>
> > >> >>
> > >> >>
> > >> >> On Sat, 4 Feb 2023, 08:12 'Nasser M. Abbasi' via sage-release, <
> [email protected]> wrote:
> > >> >>>
> > >> >>> I get this error on Linux virtual box running
> > >> >>>
> > >> >>> lsb_release -a
> > >> >>> LSB Version: n/a
> > >> >>> Distributor ID: ManjaroLinux
> > >> >>> Description: Manjaro Linux
> > >> >>> Release: 22.0.0
> > >> >>> Codename: Sikaris
> > >> >>>
> > >> >>> After extracting the gzip file, these are the commands I did
> > >> >>>
> > >> >>> unset SAGE_ROOT
> > >> >>> unset SAGE_LOCAL
> > >> >>> export GIAC=/usr/local/bin/giac
> > >> >>> export MAXIMA=/usr/local/bin/maxima
> > >> >>> ./configure --with-system-python=no
> > >> >>> make
> > >> >>>
> > >> >>> At the end I see
> > >> >>>
> > >> >>> -------------
> > >> >>> sagemath_doc_html-none] File
> "/home/me/TMP/sage-9.8.rc0/src/sage_docbuild/sphinxbuild.py", line 263, in
> raise_errors
> > >> >>> [sagemath_doc_html-none] raise OSError(self._error)
> > >> >>> [sagemath_doc_html-none] OSError:
> /home/me/TMP/sage-9.8.rc0/src/sage/manifolds/chart.py:docstring of
> sage.manifolds.chart.RealChart.plot:104: WARNING: Exception occurred in
> plotting chart-1
> > >> >>> [sagemath_doc_html-none]
> > >> >>> [sagemath_doc_html-none] Note: incremental documentation builds
> sometimes cause spurious
> > >> >>> [sagemath_doc_html-none] error messages. To be certain that these
> are real errors, run
> > >> >>> [sagemath_doc_html-none] "make doc-clean doc-uninstall" first and
> try again.
> > >> >>> [sagemath_doc_html-none] make[6]: *** [Makefile:28:
> doc-inventory--reference-manifolds] Error 1
> > >> >>> [sagemath_doc_html-none] make[5]: *** [Makefile:45:
> doc-inventory-reference] Error 2
> > >> >>> make[4]: *** [Makefile:3262: sagemath_doc_html-SAGE_DOCS-no-deps]
> Error 2
> > >> >>> make[3]: *** [Makefile:3262:
> /home/me/TMP/sage-9.8.rc0/local/var/lib/sage/installed/sagemath_doc_html-none]
>
> Error 2
> > >> >>> make[2]: *** [Makefile:2766: all-start] Error 2
> > >> >>> make[2]: Leaving directory '/home/me/TMP/sage-9.8.rc0/build/make'
> > >> >>>
> > >> >>> real 71m30.833s
> > >> >>> user 103m7.355s
> > >> >>> sys 5m48.306s
> > >> >>> ***************************************************************
> > >> >>> Error building Sage.
> > >> >>>
> > >> >>> The following package(s) may have failed to build (not necessarily
> > >> >>> during this run of 'make all-start'):
> > >> >>>
> > >> >>> It is safe to delete any log files and build directories, but they
> > >> >>> contain information that is helpful for debugging build problems.
> > >> >>> WARNING: If you now run 'make' again, the build directory of the
> > >> >>> same version of the package will, by default, be deleted. Set the
> > >> >>> environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this.
> > >> >>> ----------------------------
> > >> >>>
> > >> >>> The following folder contains config.log and install.log files
> > >> >>>
> > >> >>> Thank you
> > >> >>> --Nasser
> > >> >>>
> > >> >>>
> > >> >>>
> > >> >>>
> > >> >>>
> > >> >>>
> > >> >>> On Friday, February 3, 2023 at 3:40:20 AM UTC-6 Dima Pasechnik
> wrote:
> > >> >>>>
> > >> >>>> On Fri, Feb 3, 2023 at 7:33 AM Sébastien Labbé <[email protected]>
> wrote:
> > >> >>>> >
> > >> >>>> >
> > >> >>>> >
> > >> >>>> > On Thursday, February 2, 2023 at 7:37:27 PM UTC+1
> [email protected] wrote:
> > >> >>>> > On Thursday, February 2, 2023 at 9:30:30 AM UTC-8 Sébastien
> Labbé wrote:
> > >> >>>> > ./bootstrap: 9: m4: Permission denied
> > >> >>>> > make: *** [Makefile:365 : configure] Erreur 1
> > >> >>>> >
> > >> >>>> > Do you have "." in PATH?
> > >> >>>> >
> > >> >>>> >
> > >> >>>> > No
> > >> >>>> >
> > >> >>>> > What does "which m4" say?
> > >> >>>> >
> > >> >>>> >
> > >> >>>> > It returns nothing! Thanks for the hint. I found the problem:
> when reading the sage README to install sage from scratch on this new
> machine, I installed the basic stuff as follows:
> > >> >>>> >
> > >> >>>> > $ sudo apt install gcc gfortran g++ make m4 perl ranlib tar bc
> > >> >>>> > [...]
> > >> >>>> > E: Impossible de trouver le paquet ranlib
> > >> >>>> >
> > >> >>>> > But this returned an error on ranlib and I assumed it had
> installed the other packages in the list but no, it did not (gcc, gfortran,
> etc. were not installed as well).
> > >> >>>> >
> > >> >>>> > Is ranlib really needed for sage? Can we remove it from the
> README?
> > >> >>>>
> > >> >>>> ranlib is a standard tool, and is used by various build systems.
> On
> > >> >>>> Debian it's a part of binutils package.
> > >> >>>>
> > >> >>>> README is not platform-specific, and it does not tell you to
> install
> > >> >>>> *package* called ranlib.
> > >> >>>> However, we should add there an advice to look for what packages
> to install in
> > >> >>>> build/pkgs/_prereq/distros/
> > >> >>>> (e.g. for Debian it's in build/pkgs/_prereq/distros/debian.txt)
> > >> >>>>
> > >> >>>> (Once our GitHub is live in few days, it's a very quick PR to do
> :-))
> > >> >>>>
> > >> >>>>
> > >> >>>>
> > >> >>>> >
> > >> >>>> >
> > >> >>>> >
> > >> >>>> > --
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> Google Groups "sage-release" group.
> > >> >>>> > To unsubscribe from this group and stop receiving emails from
> it, send an email to [email protected].
> > >> >>>> > To view this discussion on the web visit
> https://groups.google.com/d/msgid/sage-release/d6aecaee-279a-45f8-a645-36483d72a382n%40googlegroups.com
> .
> > >> >>>
> > >> >>> --
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> send an email to [email protected].
> > >> >>>
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> .
> > >> >
> > >> > --
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