Hello! Im having exactly the same issue with SAGE 5.8 (output attached). As I read that "I am on my own" I am curious if it is on the TODO list to solve this issue? Or was this just an experimental "proof of concept"? Any support for this?
The reason why I am asking is the docs [1] are quite up-2-date - so in my opinion the code should be too... :) [1] http://www.sagemath.org/doc/numerical_sage/installation_linux.html If I can be of any help to you - please let me know since I would be very excited about having this feature working...!! :) Greetings -- Ursin Solèr ETH Zürich Institut für Teilchenphysik Schafmattstrasse 20 / HPK G29 CH-8093 Zürich Switzerland Phone: +41 (0) 44 633 2034 Email: [email protected] <http://www.edm.ethz.ch> -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/sage-support?hl=en. For more options, visit https://groups.google.com/groups/opt_out.
Attempting to download package vtk_meta-1 >>> Checking online list of optional packages. [.] >>> Checking online list of experimental packages. [.] >>> Found vtk_meta-1 >>> Downloading vtk_meta-1.spkg. [............................................................] vtk_meta-1 ==================================================== Extracting package /data/sage-5.8-linux-64bit-ubuntu_12.04.2_lts-x86_64-Linux/spkg/optional/vtk_meta-1.spkg -rw-rw-r-- 1 ursin ursin 20244480 Mai 14 10:34 /data/sage-5.8-linux-64bit-ubuntu_12.04.2_lts-x86_64-Linux/spkg/optional/vtk_meta-1.spkg Finished extraction **************************************************** Host system: Linux ursin-ThinkPad-T420 3.2.0-40-generic #64-Ubuntu SMP Mon Mar 25 21:22:10 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/data/sage-5.8-linux-64bit-ubuntu_12.04.2_lts-x86_64-Linux/local/bin/../libexec/gcc/x86_64-unknown-linux-gnu/4.6.3/lto-wrapper Target: x86_64-unknown-linux-gnu Configured with: ../src/configure --prefix=/home/buildbot/build/sage/snapperkob/snapperkob_binary/build/sage-5.8/local --with-local-prefix=/home/buildbot/build/sage/snapperkob/snapperkob_binary/build/sage-5.8/local --with-gmp=/home/buildbot/build/sage/snapperkob/snapperkob_binary/build/sage-5.8/local --with-mpfr=/home/buildbot/build/sage/snapperkob/snapperkob_binary/build/sage-5.8/local --with-mpc=/home/buildbot/build/sage/snapperkob/snapperkob_binary/build/sage-5.8/local --with-system-zlib --disable-multilib Thread model: posix gcc version 4.6.3 (GCC) **************************************************** WARNING: spkg-install is not executable, making it executable cmake version 2.4-patch 8 Usage cmake [options] <path-to-source> cmake [options] <path-to-existing-build> Command-Line Options -C <initial-cache> = Pre-load a script to populate the cache. -D <var>:<type>=<value> = Create a cmake cache entry. -G <generator-name> = Specify a makefile generator. -E = CMake command mode. -i = Run in wizard mode. -L[A][H] = List non-advanced cached variables. -N = View mode only. -P <file> = Process script mode. --graphviz=[file] = Generate graphviz of dependencies. --debug-trycompile = Do not delete the try compile directories.. --debug-output = Put cmake in a debug mode. --help-command cmd [file] = Print help for a single command and exit. --help-command-list [file] = List available listfile commands and exit. --help-module module [file] = Print help for a single module and exit. --help-module-list [file] = List available modules and exit. --copyright [file] = Print the CMake copyright and exit. --help = Print usage information and exit. --help-full [file] = Print full help and exit. --help-html [file] = Print full help in HTML format. --help-man [file] = Print a UNIX man page and exit. --version [file] = Show program name/version banner and exit. Generators The following generators are available on this platform: KDevelop3 = Generates KDevelop 3 project files. Unix Makefiles = Generates standard UNIX makefiles. vtk-5.0.3-1 ==================================================== Extracting package /data/sage-5.8-linux-64bit-ubuntu_12.04.2_lts-x86_64-Linux/spkg/build/vtk_meta-1/vtk-5.0.3-1.spkg -rw-r--r-- 1 ursin ursin 6156090 Nov 2 2007 /data/sage-5.8-linux-64bit-ubuntu_12.04.2_lts-x86_64-Linux/spkg/build/vtk_meta-1/vtk-5.0.3-1.spkg Finished extraction **************************************************** Host system: Linux ursin-ThinkPad-T420 3.2.0-40-generic #64-Ubuntu SMP Mon Mar 25 21:22:10 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/data/sage-5.8-linux-64bit-ubuntu_12.04.2_lts-x86_64-Linux/local/bin/../libexec/gcc/x86_64-unknown-linux-gnu/4.6.3/lto-wrapper Target: x86_64-unknown-linux-gnu Configured with: ../src/configure --prefix=/home/buildbot/build/sage/snapperkob/snapperkob_binary/build/sage-5.8/local --with-local-prefix=/home/buildbot/build/sage/snapperkob/snapperkob_binary/build/sage-5.8/local --with-gmp=/home/buildbot/build/sage/snapperkob/snapperkob_binary/build/sage-5.8/local --with-mpfr=/home/buildbot/build/sage/snapperkob/snapperkob_binary/build/sage-5.8/local --with-mpc=/home/buildbot/build/sage/snapperkob/snapperkob_binary/build/sage-5.8/local --with-system-zlib --disable-multilib Thread model: posix gcc version 4.6.3 (GCC) **************************************************** WARNING: spkg-install is not executable, making it executable patching file Wrapping/Python/CMakeLists.txt patching file Wrapping/Python/README.txt patching file Wrapping/Python/setup.py.in patching file Wrapping/Python/vtk/qt4/QVTKRenderWindowInteractor.py patching file Wrapping/Python/vtk/qt4/__init__.py Creating vtk-build directory /data/sage-5.8-linux-64bit-ubuntu_12.04.2_lts-x86_64-Linux/spkg/build/vtk-5.0.3-1/src/vtk-build -- Check for working C compiler: /data/sage-5.8-linux-64bit-ubuntu_12.04.2_lts-x86_64-Linux/local/bin/gcc -- Check for working C compiler: /data/sage-5.8-linux-64bit-ubuntu_12.04.2_lts-x86_64-Linux/local/bin/gcc -- works -- Check size of void* -- Check size of void* - done -- Check for working CXX compiler: /data/sage-5.8-linux-64bit-ubuntu_12.04.2_lts-x86_64-Linux/local/bin/g++ -- Check for working CXX compiler: /data/sage-5.8-linux-64bit-ubuntu_12.04.2_lts-x86_64-Linux/local/bin/g++ -- works -- Check size of int -- Check size of int - done -- Check size of long -- Check size of long - done -- Check size of char -- Check size of char - done -- Check size of short -- Check size of short - done -- Check size of float -- Check size of float - done -- Check size of double -- Check size of double - done -- Looking for limits.h -- Looking for limits.h - found -- Looking for unistd.h -- Looking for unistd.h - found -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for include files CMAKE_HAVE_SYS_PRCTL_H -- Looking for include files CMAKE_HAVE_SYS_PRCTL_H - found -- Check if the system is big endian -- Check if the system is big endian - little endian -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Looking for C++ include iostream -- Looking for C++ include iostream - found -- Check for STD namespace -- Check for STD namespace - found -- Check for ANSI scope -- Check for ANSI scope - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Check size of long long -- Check size of long long - done -- Check size of __int64 -- Check size of __int64 - failed -- Checking support for C++ type bool -- Checking support for C++ type bool -- yes -- Checking support for full template specialization syntax -- Checking support for full template specialization syntax -- yes -- Checking signedness of char -- Checking signedness of char -- signed -- Looking for getsockname in socket -- Looking for getsockname in socket - not found -- Checking for getsockname with socklen_t -- Checking for getsockname with socklen_t -- yes -- Checking support for C++ explicit template instantiation -- Checking support for C++ explicit template instantiation -- yes -- Compiling VTK CMake commands -- Compiling VTK CMake commands - done -- Loading VTK CMake commands -- Loading VTK CMake commands - done -- Looking for C++ include iosfwd -- Looking for C++ include iosfwd - found -- Looking for C++ include iostream.h -- Looking for C++ include iostream.h - not found -- Checking ANSI streams end-of-file bug level -- Checking ANSI streams end-of-file bug level - 1 -- Checking if ostream supports long long -- Checking if ostream supports long long -- yes -- Checking if istream supports long long -- Checking if istream supports long long -- yes -- Checking whether STL classes are in std namespace -- Checking whether STL classes are in std namespace - yes -- Checking whether ANSI stream headers are available -- Checking whether ANSI stream headers are available - yes -- Checking whether ANSI streams are in std namespace -- Checking whether ANSI streams are in std namespace - yes -- Checking whether ANSI string stream is available -- Checking whether ANSI string stream is available - yes -- Checking whether header cstddef is available -- Checking whether header cstddef is available - yes -- Checking whether stl string has operator!= for char* -- Checking whether stl string has operator!= for char* - yes -- Checking whether stl has iterator_traits -- Checking whether stl has iterator_traits - yes -- Checking whether stl has standard template allocator -- Checking whether stl has standard template allocator - yes -- Checking for rebind member of stl allocator -- Checking for rebind member of stl allocator - yes -- Checking for non-standard argument to stl allocator<>::max_size -- Checking for non-standard argument to stl allocator<>::max_size - no -- Checking whether stl containers support allocator objects. -- Checking whether stl containers support allocator objects. - yes -- Checking whether "<>" is needed for template friends -- Checking whether "<>" is needed for template friends - yes -- Checking for member template support -- Checking for member template support - yes -- Checking for standard template specialization syntax -- Checking for standard template specialization syntax - yes -- Checking whether argument dependent lookup is supported -- Checking whether argument dependent lookup is supported - yes -- Checking whether struct stat has st_mtim member -- Checking whether struct stat has st_mtim member - yes -- Looking for C++ include fcntl.h -- Looking for C++ include fcntl.h - found -- Looking for C++ include unistd.h -- Looking for C++ include unistd.h - found -- Looking for include files STDC_HEADERS -- Looking for include files STDC_HEADERS - found -- Looking for include files HAVE_ALLOCA_H -- Looking for include files HAVE_ALLOCA_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_STDIO_H -- Looking for include files HAVE_STDIO_H - found -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_STDDEF_H -- Looking for include files HAVE_STDDEF_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for alloca -- Looking for alloca - found -- Looking for strerror -- Looking for strerror - found -- Check size of size_t -- Check size of size_t - done -- Check size of ssize_t -- Check size of ssize_t - done -- Check size of ptrdiff_t -- Check size of ptrdiff_t - done -- Check size of off_t -- Check size of off_t - done -- Check size of double -- Check size of double - done -- Check size of float -- Check size of float - done -- Check size of int -- Check size of int - done -- Check size of long -- Check size of long - done -- Check size of short -- Check size of short - done -- Check size of uchar -- Check size of uchar - failed -- Performing NetCDF Test HAVE_ST_BLKSIZE -- Performing NetCDF Test HAVE_ST_BLKSIZE - Success -- Performing NetCDF Test HAVE_FTRUNCATE -- Performing NetCDF Test HAVE_FTRUNCATE - Success -- Check if the system is big endian -- Check if the system is big endian - little endian -- Looking for glXGetProcAddressARB -- Looking for glXGetProcAddressARB - not found -- Looking for glXGetProcAddress -- Looking for glXGetProcAddress - not found -- Could not find extension loader. Extensions disabled. CMake Error: This project requires some variables to be set, and cmake can not find them. Please set the following variables: OPENGL_gl_LIBRARY (ADVANCED) TK_INCLUDE_PATH (ADVANCED) -- Configuring done Error configuring VTK real 0m12.759s user 0m7.104s sys 0m2.212s ************************************************************************ Error installing package vtk-5.0.3-1 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the relevant part of the log file /data/sage-5.8-linux-64bit-ubuntu_12.04.2_lts-x86_64-Linux/spkg/logs/vtk-5.0.3-1.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /data/sage-5.8-linux-64bit-ubuntu_12.04.2_lts-x86_64-Linux/spkg/build/vtk-5.0.3-1 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/data/sage-5.8-linux-64bit-ubuntu_12.04.2_lts-x86_64-Linux/spkg/build/vtk-5.0.3-1' && '/data/sage-5.8-linux-64bit-ubuntu_12.04.2_lts-x86_64-Linux/sage' -sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************ Using SAGE Server http://www.sagemath.org//packages http://www.sagemath.org//packages/standard/list --> /data/sage-5.8-linux-64bit-ubuntu_12.04.2_lts-x86_64-Linux/tmp/list Using SAGE Server http://www.sagemath.org//packages http://www.sagemath.org//packages/experimental/list --> /data/sage-5.8-linux-64bit-ubuntu_12.04.2_lts-x86_64-Linux/tmp/list Error building vtk real 0m15.382s user 0m8.489s sys 0m2.408s ************************************************************************ Error installing package vtk_meta-1 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the relevant part of the log file /data/sage-5.8-linux-64bit-ubuntu_12.04.2_lts-x86_64-Linux/spkg/logs/vtk_meta-1.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /data/sage-5.8-linux-64bit-ubuntu_12.04.2_lts-x86_64-Linux/spkg/build/vtk_meta-1 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/data/sage-5.8-linux-64bit-ubuntu_12.04.2_lts-x86_64-Linux/spkg/build/vtk_meta-1' && '/data/sage-5.8-linux-64bit-ubuntu_12.04.2_lts-x86_64-Linux/sage' -sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************
