I get the impression that without setting ymin,ymax you just end up with a 
tiny range for the y-axis and its labelling is just very weird. I think the 
labels displayed are shifted and scaled. So the error is just how the 
labels are printed. That looks the same as 
https://github.com/sagemath/sage/issues/34233

The default behaviour would be to derive ymin and ymax from the sampled 
points, and in your point plot example, those values vary from 1-1e-6 to 
1+0e-6. So I think the range is derived appropriately. The labels on the 
y-axis are just printed in a misguided way.

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