#14706: Upgrade R to version 3.0.2
-------------------------------------+-------------------------------------
Reporter: charpent | Owner: jdemeyer
Type: enhancement | Status: needs_info
Priority: major | Milestone: sage-5.13
Component: packages: | Resolution:
standard | Merged in:
Keywords: r-project spkg | Reviewers: Leif Leonhardy, Karl-
Authors: Emmanuel | Dieter Crisman, Jeroen Demeyer
Charpentier, Jean-Pierre Flori | Work issues:
Report Upstream: N/A | Commit:
Branch: | Stopgaps:
Dependencies: |
-------------------------------------+-------------------------------------
Comment (by jpflori):
I guess this is only a problem on OS X because of
{{{
R_LD_LIBRARY_PATH_save=${R_LD_LIBRARY_PATH}
R_LD_LIBRARY_PATH=
case "${host_os}" in
darwin*)
## Darwin provides a full path in the ID of each library such
## that the linker can add library's path to the binary at link time.
## This allows the dyld to find libraries even without
xx_LIBRARY_PATH.
## No paths should be added to R_LD_LIBRARY_PATH (which in turn
## changes DYLD_LIBRARY_PATH), because they override the system
## look-up sequence. Such automatic override has proven to break
things
## like system frameworks (e.g. ImageIO or OpenGL framework).
;;
*)
for arg in ${LDFLAGS}; do
case "${arg}" in
-L*)
lib=`echo ${arg} | sed "s/^-L//"`
R_SH_VAR_ADD(R_LD_LIBRARY_PATH, [${lib}], [${PATH_SEPARATOR}])
;;
esac
done
;;
esac
}}}
and this could be fishy as well because it look somehow contradictory with
the above
{{{
case "${host_os}" in
darwin*)
## In order to allow the R build to be relocatable, we strip paths
## from all shlibs and rely on DYLD_LIBRARY_PATH. Unfortunately
## Darwin linker ignores it at build-time and doesn't use -L to
## resolve dylib dependencies, so libRblas will not be found unless
## we tell ld where it lives. I don't know of any more elegant
solution :/
if test "x${use_blas_shlib}" = xyes; then
LIBR="${LIBR} -dylib_file
libRblas.dylib:\$(R_HOME)/lib\$(R_ARCH)/libRblas.dylib"
fi
;;
esac
AC_SUBST(LIBR)
}}}
in configure.ac.
--
Ticket URL: <http://trac.sagemath.org/ticket/14706#comment:100>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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