#16004: Update notebook to utilize pure javascript JSmol for default live 3-D
-------------------------------------+-------------------------------------
Reporter: gutow | Owner: gutow
Type: enhancement | Status: needs_review
Priority: major | Milestone: sage-6.4
Component: notebook | Resolution:
Keywords: Jmol 3D 3-D | Merged in:
Authors: Jonathan Gutow, | Reviewers: Steven Trogdon, Karl-
Volker Braun | Dieter Crisman, Jonathan Gutow
Report Upstream: Reported | Work issues:
upstream. Developers acknowledge | Commit:
bug. | Stopgaps:
Branch: |
Dependencies: #17020 |
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Comment (by kcrisman):
More info. Clicking on the js console gives
{{{
FileManager opening 1
http://localhost:8080/home/admin/302/cells/1/sage0-size500.jmol
FileManager opening 3
http://localhost:8080/home/admin/302/cells/1/sage0-size500-184635879.jmol.zip|SCRIPT
FileManager opening 1
http://localhost:8080/home/admin/302/cells/1/sage0-size500-184635879.jmol.zip
The Resolver thinks Xyz
reading 10 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty
"auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Babel
10 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds
automatically
no data
pmesh obj_729730 "obj_729730.pmesh";
reading isosurface data from
http://localhost:8080/home/admin/302/cells/1/sage0-size500-184635879.jmol.zip|obj_729730.pmesh
FileManager opening 3
http://localhost:8080/home/admin/302/cells/1/sage0-size500-184635879.jmol.zip|obj_729730.pmesh
FileManager opening 1
http://localhost:8080/home/admin/302/cells/1/sage0-size500-184635879.jmol.zip
}}}
But
{{{
$ cd .sage/sage_notebook.sagenb/home/admin/302/cells/1
$ ls
sage0-size500-508165167.jmol.zip sage0-size500.jmol
}}}
So the old 1846... isn't even in the directory! Is it in the `.jmol`
file? What role does that file even play?
----
Another thing I'm noticing is that, in the past, I thought one could only
discard changes since the last cell evaluation, which sort of
automatically saved. But for some reason now "discard changes" seems to
discard ALL changes since the last save. I can't see now how any of this
could be responsible for that, but I am going to have to confirm that this
is either prior behavior (which I don't buy) or unrelated (which I hope).
--
Ticket URL: <http://trac.sagemath.org/ticket/16004#comment:121>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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