#9808: Upgrade numpy to 1.5.0 and scipy to 0.8
--------------------------------------------------------------------------------------------------+
Reporter: maldun
| Owner: maldun
Type: task
| Status: needs_review
Priority: major
| Milestone: sage-4.6
Component: packages
| Keywords: numpy, scipy
Author: Stefan Reiterer, Francois Bissey, John Palmieri, David Kirkby,
Karl-Dieter Crisman | Upstream: Fixed upstream, but not in a stable
release.
Reviewer: Karl-Dieter Crisman, David Kirkby, Leif Leonhardy, Francois
Bissey | Merged:
Work_issues:
|
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Changes (by newvalueoldvalue):
* status: needs_work => needs_review
* author: Stefan Reiterer, Francois Bissey, John Palmieri, David Kirkby
=> Stefan Reiterer, Francois Bissey, John
Palmieri, David Kirkby, Karl-Dieter Crisman
Old description:
> This ticket updates two packages, which must be updated together,
>
> http://sage.math.washington.edu/home/palmieri/SPKG/numpy-1.5.0.spkg
>
> http://boxen.math.washington.edu/home/kirkby/patches/scipy-0.8.spkg
>
> However, these changes have made it necessary to update the scipy_sandbox
> package too (#10092)
>
> http://boxen.math.washington.edu/home/kirkby/patches/scipy_sandbox-20071020.p6.spkg
>
> '''Important notes:'''
> The above three packages need to be installed together, although the
> scipy_sandbox package can be installed without the new Numpy or !SciPy
> packages.
>
> After installing Numpy, one needs to execute sage -ba, or do
> {{{
> touch $SAGE_LOCAL/lib/python/site-packages/Cython/Includes/numpy.pxd
> }}}
> or else one will get runtime warnings. (Or if someone wants less hassle,
> they can patch sage-4.6.alpha2.spkg before building Sage).
>
> trac_9808_numpy_doctest_change.patch in the attachment has to be applied,
> in order to get all doctests running because some of the output has
> changed.
>
> '''For reviewers:'''
> changes.txt holds a summary of all changes with reference to the diffs,
> and links to other tickets
New description:
This ticket updates two packages, which must be updated together,
http://sage.math.washington.edu/home/kcrisman/numpy-1.5.0.spkg
http://boxen.math.washington.edu/home/kirkby/patches/scipy-0.8.spkg
However, these changes have made it necessary to update the scipy_sandbox
package too (#10092), which now has positive review and is in Sage
4.6.alpha3.
http://boxen.math.washington.edu/home/kirkby/patches/scipy_sandbox-20071020.p6.spkg
After installing Numpy, one needs to execute sage -ba, or do
{{{
touch $SAGE_LOCAL/lib/python/site-packages/Cython/Includes/numpy.pxd
}}}
or else one will get runtime warnings. (Or if someone wants less hassle,
they can patch sage-4.6.alpha2.spkg before building Sage).
trac_9808_numpy_doctest_change.patch in the attachment has to be applied,
in order to get all doctests running because some of the output has
changed.
'''For reviewers:'''
changes.txt holds a summary of all changes with reference to the diffs,
and links to other tickets
--
Comment:
Okay, I went back to John's initial idea and just removed the ppc64
option. I'm still totally mystified as to why that would solve it per se,
if the double `-c` option is really a problem, but oh well - ppc64 is the
problem.
So I have now changed the description yet again to point us to a numpy
spkg at my sage account. Try it out. I will now also attach diffs for
reference about this. Notice that I only attach the changed gnu.py file
on Snow Leopard, so this should presumably only change anything on there.
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/9808#comment:275>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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