#9896: Upgrading from 4.5.3 to 4.6.alpha* can fail (not limited to MacOS X)
----------------------------------------------+-----------------------------
Reporter: jhpalmieri | Owner: GeorgSWeber
Type: defect | Status: needs_review
Priority: blocker | Milestone: sage-4.6
Component: build | Keywords: upgrade update
dependencies PARI NewPARI
Author: Leif Leonhardy, Jeroen Demeyer | Upstream: N/A
Reviewer: | Merged:
Work_issues: |
----------------------------------------------+-----------------------------
Description changed by leif:
Old description:
> On two separate machines running OS X 10.6, upgrading from 4.5.3 to
> 4.6.alpha0 seemed to work -- no errors were reported -- but Sage fails to
> start:
> {{{
> ----------------------------------------------------------------------
> | Sage Version 4.6.alpha0, Release Date: 2010-09-10 |
> | Type notebook() for the GUI, and license() for information. |
> ----------------------------------------------------------------------
> **********************************************************************
> * *
> * Warning: this is a prerelease version, and it may be unstable. *
> * *
> **********************************************************************
> *** bug in PARI/GP (Segmentation Fault), please report
> *** bug in PARI/GP (Segmentation Fault), please report
> }}}
> (Building from scratch works fine.)
>
> ----
>
> == How to test: ==
>
> '''Upgrade path for testing the fixes:
> http://sage.math.washington.edu/home/jdemeyer/dist/sage-4.6.upgradetest_alpha3/'''
>
> Note that '''non-inplace upgrades''' are currently again broken, due to
> the inclusion of matplotlib 1.0.0 (#9221) into Sage 4.6.alpha'''3'''. To
> (hopefully temporarily) work around this, it should be sufficient to
> trigger a rebuild of freetype during the upgrade '''when upgrading from a
> moved (copied or renamed) Sage installation''':
> {{{
> #!sh
> $ rm spkg/installed/freetype-*
> }}}
>
> If you want to speed up the upgrade (i.e., reduce the number of packages
> that get rebuilt) on systems '''other than Cygwin, HP-UX and Solaris''',
> do the following '''before''' starting the upgrade:
> {{{
> #!sh
> $ touch spkg/installed/iconv-1.13.1.p3
> }}}
> (This package is only used on the above systems, but upgrading it
> triggers the rebuild of MPIR on '''any''' platform, which in turn causes
> rebuilding all packages that directly or indirectly depend on MPIR, the
> GMP replacement package.)
>
> Do the upgrade:
> {{{
> #!sh
> $ ./sage -upgrade
> http://sage.math.washington.edu/home/jdemeyer/dist/sage-4.6.upgradetest_alpha3/
> }}}
> Note that you'll be prompted to confirm upgrading (by typing "y" followed
> by carriage return), so be careful when {{{tee}}}ing the output, since
> currently the script's output isn't flushed s.t. you won't see the prompt
> in that case and perhaps wait forever... ;-)
>
> ----
>
> == To the release manager / How to merge this ticket: ==
> * Replace {{{spkg/install}}} by http://trac.sagemath.org/sage_trac/raw-
> attachment/ticket/9896/trac_9896-SAGE_ROOT__spkg__install.v2b
> * Replace {{{spkg/standard/deps}}} by http://trac.sagemath.org/sage_trac
> /raw-attachment/ticket/9896/trac_9896-SAGE_ROOT__spkg__standard__deps.v3
> * Apply http://trac.sagemath.org/sage_trac/raw-
> attachment/ticket/9896/9896_scripts_hgignore.patch to the '''Sage scripts
> repository''' (Not mandatory, but helpful.)
> * Apply http://trac.sagemath.org/sage_trac/raw-
> attachment/ticket/9896/trac_9896-propagate_upgrading_to_install_script-
> scripts_repo.patch to the '''Sage scripts repository'''
> * Apply http://trac.sagemath.org/sage_trac/raw-
> attachment/ticket/9896/trac_9896-fix_extension_module_deps-sagelib.patch
> to the '''Sage library repository'''
> * Apply http://trac.sagemath.org/sage_trac/raw-
> attachment/ticket/9896/trac_9896
> -fix_hardcoded_libdirs_in_extmod_linker_cmd-sagelib.patch to the '''Sage
> library repository'''
> * Run {{{./sage -sdist ...}}}
New description:
On two separate machines running OS X 10.6, upgrading from 4.5.3 to
4.6.alpha0 seemed to work -- no errors were reported -- but Sage fails to
start:
{{{
----------------------------------------------------------------------
| Sage Version 4.6.alpha0, Release Date: 2010-09-10 |
| Type notebook() for the GUI, and license() for information. |
----------------------------------------------------------------------
**********************************************************************
* *
* Warning: this is a prerelease version, and it may be unstable. *
* *
**********************************************************************
*** bug in PARI/GP (Segmentation Fault), please report
*** bug in PARI/GP (Segmentation Fault), please report
}}}
(Building from scratch works fine.)
----
== How to test: ==
'''Upgrade path for testing the fixes:
http://sage.math.washington.edu/home/jdemeyer/dist/sage-4.6.upgradetest_alpha3/'''
Note that '''non-inplace upgrades''' are currently again broken, due to
the inclusion of matplotlib 1.0.0 (#9221) into Sage 4.6.alpha'''3'''. To
(hopefully temporarily) work around this, it is sufficient to trigger a
rebuild of freetype during the upgrade '''when upgrading from a moved
(copied or renamed) Sage installation''':
{{{
#!sh
$ rm spkg/installed/freetype-*
}}}
If you want to speed up the upgrade (i.e., reduce the number of packages
that get rebuilt) on systems '''other than Cygwin, HP-UX and Solaris''',
do the following '''before''' starting the upgrade:
{{{
#!sh
$ touch spkg/installed/iconv-1.13.1.p3
}}}
(This package is only used on the above systems, but upgrading it triggers
the rebuild of MPIR on '''any''' platform, which in turn causes rebuilding
all packages that directly or indirectly depend on MPIR, the GMP
replacement package.)
Do the upgrade:
{{{
#!sh
$ ./sage -upgrade
http://sage.math.washington.edu/home/jdemeyer/dist/sage-4.6.upgradetest_alpha3/
}}}
Note that you'll be prompted to confirm upgrading (by typing "y" followed
by carriage return), so be careful when {{{tee}}}ing the output, since
currently the script's output isn't flushed s.t. you won't see the prompt
in that case and perhaps wait forever... ;-)
----
== To the release manager / How to merge this ticket: ==
* Replace {{{spkg/install}}} by http://trac.sagemath.org/sage_trac/raw-
attachment/ticket/9896/trac_9896-SAGE_ROOT__spkg__install.v2b
* Replace {{{spkg/standard/deps}}} by http://trac.sagemath.org/sage_trac
/raw-attachment/ticket/9896/trac_9896-SAGE_ROOT__spkg__standard__deps.v3
* Apply http://trac.sagemath.org/sage_trac/raw-
attachment/ticket/9896/9896_scripts_hgignore.patch to the '''Sage scripts
repository''' (Not mandatory, but helpful.)
* Apply http://trac.sagemath.org/sage_trac/raw-
attachment/ticket/9896/trac_9896-propagate_upgrading_to_install_script-
scripts_repo.patch to the '''Sage scripts repository'''
* Apply http://trac.sagemath.org/sage_trac/raw-
attachment/ticket/9896/trac_9896-fix_extension_module_deps-sagelib.patch
to the '''Sage library repository'''
* Apply http://trac.sagemath.org/sage_trac/raw-
attachment/ticket/9896/trac_9896
-fix_hardcoded_libdirs_in_extmod_linker_cmd-sagelib.patch to the '''Sage
library repository'''
* Run {{{./sage -sdist ...}}}
--
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/9896#comment:130>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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