#9238: J. Gutow's update to Jmol in the notebook...
------------------------------------------------+---------------------------
Reporter: gutow | Owner: gutow
Type: enhancement | Status: needs_review
Priority: major | Milestone: sage-4.7
Component: notebook | Keywords:
Author: Jonathan Gutow | Upstream: N/A
Reviewer: Jason Grout, Karl-Dieter Crisman | Merged:
Work_issues: |
------------------------------------------------+---------------------------
Old description:
> Ready for testing, but requires two steps. Starting with a clean Sage
> 4.6.2: [[BR]]
>
> 1. Patch and spkg for Jmol at the command line. See
> [http://trac.sagemath.org/sage_trac/ticket/9232 #9232].
> 1. Apply [attachment:trac_9238_interactive_js.patch] and
> [attachment:trac_9238-add-help.patch].
>
> I have addressed the following issues (let me know if I've missed
> anything): [[BR]]
>
> * Addition of the ability to hide the "advanced controls". [[BR]]
> * Fix so that the advanced controls are hidden when the applet is asleep
> (no accidental calls to nonexistent applets).
> * Fix to issue of not properly loading all applets when a worksheet
> with a lot of applets is reopened (please check this one carefully).
> [[BR]]
> * Fixes to vocabulary and labels to make things clearer. *Hidden the
> div with the State in it. (Still there b/c I hope to be able to
> recreate the way the user left it on close, rather than starting fresh
> each time.)
>
> Happy testing and thank you to those who do test!
>
> ----
> Older description:
>
> Adds the following features to the notebook:
>
> 1) No more than 5 Jmols will be active at once. This prevents running
> out of memory. The user is provided with a link to wake up sleeping
> Jmols that they wish to manipulate. Sleeping Jmols are replaced with a
> static image.
>
> 2) A spin on/off check box is now provided.
>
> 3) The user may choose among a number of display sizes.
>
> 4) In the function tab, the user may change function color and mesh
> color.
>
> 5) The "State" tab displays the Jmol script to get the Jmol display.
> Eventually this will probably be hidden. If we can get the notebook to
> store this user views would also transfer across sessions.
New description:
Ready for testing.
* To just play with and comment on the changes to the Jmol interface in
the notebook go to: [http://141.233.197.45:8888/home/pub/0 3-D Jmol
examples]. If you want to try your own you can log into the one account
on this wimpy server (!username:Test, password: testing).
Setting this up on your own copy of Sage requires two steps. Starting
with a clean Sage 4.6.2: [[BR]]
1. Patch and spkg for Jmol at the command line. See
[http://trac.sagemath.org/sage_trac/ticket/9232 #9232].
1. Apply [attachment:trac_9238_interactive_js.patch] and
[attachment:trac_9238-add-help.patch]. These are best applied using the
hg_sagenb.apply(...) command within sage.
I have addressed the following issues (let me know if I've missed
anything): [[BR]]
* Addition of the ability to hide the "advanced controls". [[BR]]
* Fix so that the advanced controls are hidden when the applet is asleep
(no accidental calls to nonexistent applets).
* Fix to issue of not properly loading all applets when a worksheet with
a lot of applets is reopened (please check this one carefully). [[BR]]
* Fixes to vocabulary and labels to make things clearer. *Hidden the div
with the State in it. (Still there b/c I hope to be able to recreate the
way the user left it on close, rather than starting fresh each time.)
Happy testing and thank you to those who do test!
----
Older description:
Adds the following features to the notebook:
1) No more than 5 Jmols will be active at once. This prevents running out
of memory. The user is provided with a link to wake up sleeping Jmols
that they wish to manipulate. Sleeping Jmols are replaced with a static
image.
2) A spin on/off check box is now provided.
3) The user may choose among a number of display sizes.
4) In the function tab, the user may change function color and mesh color.
5) The "State" tab displays the Jmol script to get the Jmol display.
Eventually this will probably be hidden. If we can get the notebook to
store this user views would also transfer across sessions.
--
Comment(by gutow):
I've successfully run all the patches on a complete new Sage 4.6.2
installation with no errors. I think we've got a clean working patch
system now. I've also added an example server people can visit to just
review the interface.
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/9238#comment:118>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
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