#12011: Build ATLAS on OS X Lion
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Reporter: jhpalmieri | Owner: tbd
Type: defect | Status: needs_work
Priority: blocker | Milestone: sage-5.0
Component: packages | Keywords: Lion Darwin cvxopt atlas blas
Work_issues: | Upstream: Reported upstream. Little or no
feedback.
Reviewer: | Author: Jeroen Demeyer
Merged: | Dependencies:
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Comment(by jhpalmieri):
Now on OS X Lion, with Sage built from scratch (using the root repo patch
from this ticket), this spkg passes its self-tests, but cvxopt doesn't:
{{{
Running the test suite for cvxopt-1.1.3.p1...
Testing in /Users/palmieri/Desktop/Sage_stuff/sage_builds/new-
atlas/sage-5.0.beta7-gcc/spkg/build/cvxopt-1.1.3.p1/src/examples/doc/chap10
Testing l1svc.py ...
Traceback (most recent call last):
File "l1svc.py", line 12, in <module>
op(sum(abs(x)) + sum(u), [A*x >= 1-u, u >= 0]).solve()
File "/Users/palmieri/Desktop/Sage_stuff/sage_builds/new-
atlas/sage-5.0.beta7-gcc/local/lib/python2.7/site-
packages/cvxopt/modeling.py", line 2575, in solve
sol = solvers.lp(c[:], G, h, A, b, solver=solver)
File "/Users/palmieri/Desktop/Sage_stuff/sage_builds/new-
atlas/sage-5.0.beta7-gcc/local/lib/python2.7/site-
packages/cvxopt/coneprog.py", line 2794, in lp
from cvxopt import base, blas, misc
File "/Users/palmieri/Desktop/Sage_stuff/sage_builds/new-
atlas/sage-5.0.beta7-gcc/local/lib/python2.7/site-
packages/cvxopt/misc.py", line 20, in <module>
from cvxopt import base, blas, lapack, cholmod, misc_solvers
ImportError: dlopen(/Users/palmieri/Desktop/Sage_stuff/sage_builds/new-
atlas/sage-5.0.beta7-gcc/local/lib/python2.7/site-
packages/cvxopt/lapack.so, 2): Symbol not found: _ATL_cGetNB
Referenced from: /Users/palmieri/Desktop/Sage_stuff/sage_builds/new-
atlas/sage-5.0.beta7-gcc/local/lib/python2.7/site-
packages/cvxopt/lapack.so
Expected in: flat namespace
in /Users/palmieri/Desktop/Sage_stuff/sage_builds/new-
atlas/sage-5.0.beta7-gcc/local/lib/python2.7/site-
packages/cvxopt/lapack.so
Error: test /Users/palmieri/Desktop/Sage_stuff/sage_builds/new-
atlas/sage-5.0.beta7-gcc/spkg/build/cvxopt-1.1.3.p1/src/examples/doc/chap10/l1svc.py
failed
}}}
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/12011#comment:47>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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