On Fri, Feb 20, 2015 at 6:36 PM, David Francisco <dmffrancisc...@gmail.com> wrote: > Hello > I'm using samtools version 1.1 and every time I give the folowing command: > > samtools mpileup -C 50 -ug -f PSP/data/hg19/hg19.fa > PSP/data/PSP10/PSP10.recal.bam > PSP/data/PSP10/PSP10_sam.bcf > > I get the following message: > > [mpileup] 1 samples in 1 input files > <mpileup> Set max per-file depth to 8000 > > witch I don't get with previous versions. > > Thanks in advance > > David
These are informative logging lines (the 8000 depth limit has caused people problems due to not being aware of it). Is there a problem? Peter ------------------------------------------------------------------------------ Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server from Actuate! Instantly Supercharge Your Business Reports and Dashboards with Interactivity, Sharing, Native Excel Exports, App Integration & more Get technology previously reserved for billion-dollar corporations, FREE http://pubads.g.doubleclick.net/gampad/clk?id=190641631&iu=/4140/ostg.clktrk _______________________________________________ Samtools-help mailing list Samtools-help@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/samtools-help
