GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/102
CLIMATE-467 - Handling various calendar types
You can merge this pull request into a Git repository by running:
$ git pull https://github.com/huikyole/climate stat_down
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GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/111
CLIMATE-467: Replace the existing time decoding function with netCDF4 mod...
...ules.
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GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/112
CLIMATE-508: added a class 'Downscaling' and histogram plots
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Github user huikyole closed the pull request at:
https://github.com/apache/climate/pull/102
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Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/102#issuecomment-55335214
Please disregard this pull request because we squashed the previous changes
all together.
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GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/125
calcTemporalCorrelation from the old rcmet code is ported
Hi everyone,
The added class 'calcTemporalCorrelation' can be used to calculate temporal
correlation coefficients at
Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/111#issuecomment-63893960
That is okay. Thank you for taking care of this finally!
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GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/143
CLIMATE-564: Managing multiple netcdf files stored on a local machine
With given 'file_path' and 'filename_pattern', local.load_files can
generate an OCW dataset object
Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/143#issuecomment-70346251
Thank you very much for your review.
There is a similar function named plotAccuInTimeRange in
https://github.com/apache/climate/blob/master/mccsearch/code
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/144
CLIMATE-564: Managing multiple netcdf files stored on a local machine
Mike, thanks a million for your review and valuable advice.
There is a similar function named plotAccuInTimeRange in
Github user huikyole closed the pull request at:
https://github.com/apache/climate/pull/144
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Github user huikyole closed the pull request at:
https://github.com/apache/climate/pull/143
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GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/145
CLIMATE-564: Managing multiple netcdf files stored on a local machine
Hi Mike,
Thanks a million for the valuable advice and review.
Few changes have been amended.
- No more space
Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/111#issuecomment-83945925
All of MJJoyce's comments have been addressed. Testing using examples have
been successful.
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Github user huikyole closed the pull request at:
https://github.com/apache/climate/pull/125
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Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/112#issuecomment-95733565
I have been waiting for #111 to be merged before working on #112.
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Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/112#issuecomment-95744029
@MJJoyce, there is dependency. Current OCW time parsing module could not
properly handle my test data (CMIP5 model output). Once #111 is merged, I will
refactor this
Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/112#issuecomment-96025655
I still wonder why we prioritize the changes in #112 over major bug in the
time decoding and seasonal average. Some critical bugs in
calc_climatology_season in
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/194
Merra loader
https://issues.apache.org/jira/browse/CLIMATE-632
The loader has been tested with 3-hourly MERRA reanalysis data.
You can merge this pull request into a Git repository by
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/195
A loader to handle Weather Research and Forecasting model's two-dimensional
output file
Please refer to https://issues.apache.org/jira/browse/CLIMATE-633.
1. There is a special time p
Github user huikyole closed the pull request at:
https://github.com/apache/climate/pull/112
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Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/111#issuecomment-98246836
What do PR and DS stand for? Can we use the word ticket rather than tix?
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Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/195#issuecomment-98251803
We need to update ocw.tests first. Failed tests do not mean that this
loader does not work. As of now, OCW cannot handle any datasets whose latitude
and longitude are
Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/195#issuecomment-98277935
Dear Mike,
Thank you so much!
I did not know how to run the test locally. Sorry for the trouble.
Cheers,
Kyo
Original
Github user huikyole closed the pull request at:
https://github.com/apache/climate/pull/195
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Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/196#issuecomment-101081960
These changes do not make this module useful. As I suggested previously,
this module does not use datetime information included in the input OCW dataset
at all. Let&#
Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/196#issuecomment-101128446
First of all, without reshaping, the second dimension cannot be a month
dimension at all.
dataset.values.shape = nt, ny, nx
How do you think you can fix the
Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/196#issuecomment-101151369
@chrismattmann A better update was part of another pull request. I had to
remove the changes to generate a pull request for each issue. I will provide a
function to
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/197
Climate 634 please take a look at this request as a reference.
1. Currently, we cannot load ocw.dataset or ocw.datset_processor library in
utils.py. So calc_climatology_season is moved from
Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/197#issuecomment-101361410
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Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/197#issuecomment-101436518
Now in the latest commit, utils.calc_climatology_year,
utils.calc_climatology_season and utils.calc_climatology_montly can be all
replaced by using
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/208
Climate-641 missing data handling in OCW metrics
- Metrics calculation uses numpy.ma modules.
- The numpy arrays defined in metrics.py have been replaced by numpy.ma
arrays.
You can merge
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/210
Climate 643: Updating some of examples
Not only the bias calculation example, CLI has been debugged and updated.
Some modules have been added to the dataset_processor to propagate missing
value
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/211
CLIMATE-646 Added get_temporal_overlap in dataset_processor
The new module get_temporal_overlap finds maximum temporal overlap across
the observation and model datasets.
You can merge this pull
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/212
Climate 647- Update dataset_processor.temporal_subset
Now users can extract seasonally averaged data between month_start and
month_end using dataset_processor.temporal_subset module. By default
Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/210#issuecomment-126383587
@MJJoyce I understand your concerns. However, updating examples was
impossible without adding new modules to the dataset_processor. CLI is also
using the code based
Github user huikyole closed the pull request at:
https://github.com/apache/climate/pull/210
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GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/213
CLIMATE-643 - Updating unit conversion function
In many cases, observational and model datasets have different units for
the same variable. We need to update variable_unit_conversion module is
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/214
CLIMATE-648 - Propagation of missing data information from each dataset
A new module ocw.dataset_processor.mask_missing_data has been added. Any
missing data flag is propagated into the all
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/215
CLIMATE-650 - Fix the ensemble calculation
- Fix: ocw.dataset_processor.ensemble now uses numpy.ma.mean instead of
numpy.mean to properly handle missing values.
You can merge this pull request
Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/211#issuecomment-126828498
@MJJoyce The routine was originally inside CLI. I found out that this would
be a useful routine for other examples. First I added the routine to
dataset_processor but
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/216
CLIMATE-651 - ocw.utils.calc_subregion_area_mean_and_std is added
utils.calc_subregion_area_mean_and_std is added to calculate area mean and
standard deviation values for a given subregions using
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/217
CLIMATE-652 - ocw.utils.calc_area_weighted_spatial_average is added
ocw.utils.calc_area_weighted_spatial_average is added to cCalculate area
weighted average of the values in OCW dataset. Area
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/218
CLIMATE-653 - ocw.utils.calc_area_weighted_spatial_average is added
The current netcdf generator, dataset_processor.write_netcdf does not
support multiple datasets and subregion information. A
Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/213#issuecomment-127110465
The issue
(https://issues.apache.org/jira/browse/CLIMATE-643?jql=project%20%3D%20CLIMATE)
has been updated.
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Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/219#issuecomment-127288137
@MJJoyce, this separation does not make a lot of sense. Checking units and
converting them are not computationally demanding. Why don't we have a single
fun
Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/219#issuecomment-127291744
Way to go!
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GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/220
CLIMATE-649 - Update CLI
Updated: cli_app.py
- It is assumed that there is only one observation data
- A critical bug has been fixed. Now time period does not have to be a
multiple of 12
Github user huikyole commented on a diff in the pull request:
https://github.com/apache/climate/pull/220#discussion_r36273459
--- Diff: ocw-cli/cli_app.py ---
@@ -35,7 +36,10 @@
from ocw.data_source.local import load_file
import ocw.utils as utils
import
Github user huikyole commented on a diff in the pull request:
https://github.com/apache/climate/pull/220#discussion_r36273612
--- Diff: ocw-cli/cli_app.py ---
@@ -115,7 +119,7 @@ def load_local_model_screen(header):
note = "WARNING: Model file cann
Github user huikyole commented on a diff in the pull request:
https://github.com/apache/climate/pull/220#discussion_r36273731
--- Diff: ocw-cli/cli_app.py ---
@@ -599,123 +608,56 @@ def run_screen(model_datasets, models_info,
observations_info
Github user huikyole commented on a diff in the pull request:
https://github.com/apache/climate/pull/220#discussion_r36273814
--- Diff: ocw-cli/cli_app.py ---
@@ -1138,30 +1080,36 @@ def settings_screen(header):
new_start_time = screen.getstr
Github user huikyole commented on a diff in the pull request:
https://github.com/apache/climate/pull/220#discussion_r36273946
--- Diff: ocw-cli/cli_app.py ---
@@ -1232,11 +1180,11 @@ def settings_screen(header):
if option == '4':
screen.ad
Github user huikyole commented on a diff in the pull request:
https://github.com/apache/climate/pull/220#discussion_r36363509
--- Diff: ocw-cli/cli_app.py ---
@@ -1232,11 +1180,11 @@ def settings_screen(header):
if option == '4':
screen.ad
Github user huikyole commented on a diff in the pull request:
https://github.com/apache/climate/pull/220#discussion_r36379129
--- Diff: ocw-cli/cli_app.py ---
@@ -1232,11 +1180,11 @@ def settings_screen(header):
if option == '4':
screen.ad
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/221
CLIMATE-657 - Adding functions to calculate metrics
- Remove metrics.SpatialMeanOfTemporalMeanBias
- Add metrics.SpatialPatternTaylorDiagram
- Add functions calc_bias, calc_stddev
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/222
CLIMATE-658 - Restructure evaluation results to handle missing data values
- now the evaluation results maintain missing value information
- update _run_no_subregion_evaluation and
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/223
CLIMATE-564 - Managing multiple netcdf files stored on a local machine
- A new file loader load_multiple_files can read netcdf files with common
file name patterns.
You can merge this pull
Github user huikyole commented on a diff in the pull request:
https://github.com/apache/climate/pull/221#discussion_r36877753
--- Diff: ocw/tests/test_metrics.py ---
@@ -208,41 +229,6 @@ def test_function_run(self):
expected_result.fill(-300
Github user huikyole commented on a diff in the pull request:
https://github.com/apache/climate/pull/221#discussion_r36885212
--- Diff: ocw/tests/test_metrics.py ---
@@ -208,41 +229,6 @@ def test_function_run(self):
expected_result.fill(-300
Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/222#issuecomment-131181357
@MJJoyce Is there a step-by-step guide to update the Sphinx docs?
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GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/224
CLIMATE-659 - Remove SpatialMeanOfTemporalMeanBias
- delete: metrics.SpatialMeanOfTemporalMeanBias
- new examples will calculate this quantity in a more reasonable way
You can merge this pull
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/229
CLIMATE-667 - OCW spatial_boundaries bug
- ocw.dataset.spatial_boundaries uses np.min and np.max instead of min and
max
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GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/230
Climate-668 - ocw.dataset_spatial_resolution needs to be fixed
- without this fix, ocw.dataset.spatial_resolution cannot handle two
dimensional latitudes and longitudes
- for curvilinear
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/231
CLIMATE-669 - OCW spatial_boundary bug
- min and max functions in ocw.dataset.spatial_boundaries are replaced by
numpy.min and numpy.max
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GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/232
CLIMATE-673 - Update the module to load multiple netcdf files
- ocw.data_source.local.load_multiple_files has been updated
- filename_patterns deleted
- common filename pattern can be
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/233
CLIMATE-671 - Inappropriate spatial subset for datasets on curvilinear grids
- ocw.dataset_processsor.subset now handles target_datasets on curvilinear
grids where target_datasets.lats and
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/234
CLIMATE-672 - Update the input validation function for OCW datasets
- ocw.dataset._validate_inputs considers datasets on curvilinear grids
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GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/235
Climate-666 - Replace examples with the RCMES script and yaml files
- run_RCMES.py, example_package.py and .yaml files replace the old examples.
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GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/236
CLIMATE-674 - Update the spatial_regrid module to handle data on
curvilinear grids
- ocw.dataset_processor.spatial_regrid is updated to handle two dimensional
latitudes and longitudes given as
Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/237#issuecomment-142684416
@MBoustani I reviewed the code and now it addresses 'one' of the issues
when loading datasets with two-dimensional longitudes and latitudes. #237 needs
to
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/238
CLIMATE-676 - Cleaning up the examples
- Following up CLIMATE-666, some files are renamed and others are moved
into a new folder.
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Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/196#issuecomment-144755310
@MJJoyce , #647 addressed this issue.
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GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/240
CLIMATE-679 - Statistical downscaling examples
- an example script to statistically downscale the datasets from climate
models is added
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Github user huikyole closed the pull request at:
https://github.com/apache/climate/pull/194
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GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/241
CLIMATE-685 - Update the examples using Evaluation Objects
- most of the examples have been updated and all examples are tested except
the esgf_integration_example.py
- CLIMATE-686 should be
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/242
Climate-686 - Update the converting functions in ocw.evaluation
- evaluation.convert_evaluation_result and
evaluation.convert_unary_evaluation_result have been updated.
- The updated modules
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/243
CLIMATE-680 - A new loader to read WRF precipitation data with a filelist
- ocw.data_source.local.load_WRF_2d_files_RAIN has been added
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GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/244
CLIMATE-681 - Update the loader to read WRF data
- ocw.data_source.local.load_WRF_2d_files updated
You can merge this pull request into a Git repository by running:
$ git pull https
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/245
Climate-687 - A new loader to read GPM precipitation data with a file list
- ocw.data_source.local.load_GPM_IMERG_files has been added to read Level 3
IMERG HDF files from the Global
Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/245#issuecomment-146710262
@MJJoyce I think the failed test may be related to h5py library. nosetests
on my local machine worked fine. Could you address this, please?
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GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/246
Climate-688 - Visualization and model ensemble calculation in run_RCMES.py
- color map for the bias map is changed
- the model ensemble is calculated only if there are multiple models
You can
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/247
Climate - 687 - A new loader to read GPM precipitation data with a filelist
- ocw.data_source.local.load_GPM_IMERG_files is added
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GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/248
CLIMATE-683 - A new loader to read multiple netCDF files with a file list
and spatial mask
- A new loader,
ocw.data_source.local.load_dataset_from_multiple_netcdf_files, is added
You can merge
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/249
CLIMATE-692 - A new loader to read NLDAS data with a file list
- ocw.data_source.local.load_NLDAS_forcingA_files is added
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GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/250
CLIMATE-694 - A new module to rebin a dataset using time index
- ocw.dataset_processor.temporal_rebin_with_time_index has been added
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GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/251
CLIMATE-696 - Examples to evaluate CORDEX-ARCTIC RCMs
- run_RCMES.py and metrics_and_plots have been updated.
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$ git pull
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/252
CLIMATE-698 - Handling missing values in
ocw.dataset_processor.temporal_rebin_with_time_index
- binned_values is now a numpy.ma array
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GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/253
CLIMATE-701 - Examples for evaluation of CORDEX-Arctic RCMs
- Four configuration (yaml) files have been added.
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$ git pull
Github user huikyole commented on the pull request:
https://github.com/apache/climate/pull/253#issuecomment-150281813
@MJJoyce Could you please copy the error message from the failed test and
paste here?
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GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/254
CLIMATE-700 - Complete examples to reproduce a RCMES-based paper
- Ten yaml files have been added in examples/NARCCAP_paper to reproduce the
plots in Kim et al.(2013) paper on evaluating NARCCAP
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/257
CLIMATE-703 - Remove pop-up windows from metrics_and_plots.py
- plt.show() has been removed
- The license head has been added
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GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/258
CLIMATE-704 - Sensitivity of spatial boundary check in dataset_processor
- ocw.dataset_processor._are_bounds_contained_by_dataset has been updated
to make it less sensitive to very small
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/267
CLIMATE-714 - Updating the regridding routine
- ocw.dataset_processor._rcmes_spatial_regrid has been replaced by
scipy.interpolate.griddata to properly regrid datasets in curvilinear grid.
You
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/268
CLIMATE-714 - Updating the regridding routine
- ocw.dataset_processor._rcmes_spatial_regrid has been replaced by
scipy.interpolate.griddata to properly regrid datasets in curvilinear grid.
You
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/272
CLIMATE-717 - Debugging CLI
- ocw-cli/cli_app.py has been updated.
- Spatial subsetting is not applied if the model data uses curvilinear
grids.
- Units of all datasets are checked and
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/273
CLIMATE-716 - Dataset object manipulation when plotting a Taylor diagram
using a configuration file
-
examples/configuration_file_examples
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/274
CLIMATE-718 - Temporal slice of two-dimensional model output
- dataset_processor.temporal_slice has been added
You can merge this pull request into a Git repository by running:
$ git pull
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/275
CLIMATE-719 - Subsetting model data on curvillinear grids in the confâ¦
â¦iguration file runner
- run_RCMES.py is using ocw.dataset_processor.temporal_slice to slice
temporal
GitHub user huikyole opened a pull request:
https://github.com/apache/climate/pull/277
CLIMATE-720 - Revise file structure
- A new folder, 'RCMES', is generated.
- Configuration files are moved into RCMES/configuration_files/
- cli_app.py is now in RCMES
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