Hi and thanks to you both !
Jim : I tryed your solution and it works just fine !
Peter : thanks for the advice, I'll support only sff/fastq as inputs
you're right it makes think easier !
Jerome
Peter Cock a écrit :
On Wed, Jun 8, 2011 at 4:36 PM, Mariette wrote:
Hi ever
Hi everyone,
I'm facing a little problem ...
I have the following input :
label="Quality reads file (if input is a fasta)" />
and the following output:
qual_file != None
If I provide the tool a sff file, the output is sff, if I only provide a
fasta file and no qual file the output wi
lean_pairends_select}">
${clean_pairends.clean_pairends_select} == "y"
the data file is created with a label "n" ! Is it not weird ?
Jerome
Mariette a écrit :
Thanks this is what I was looking for !!
I succeded to make it work when checking the value on a simple param
using the name like
uot;y":
#end if
but this is not working ... there is a way to do what I want ?
thx
Jerome
Peter Cock a écrit :
On Tue, Jun 7, 2011 at 9:24 AM, Mariette wrote:
Thanks for the answer,
so I tryed to write a wrapper, but the main script is not recognize.
When I'm calling my wrapper
wrapper current directory
is the job_working_directory, there is anyway to access my main script
just like it's done for the wrapper ?
thanks for your answer,
Jerome
Peter Cock a écrit :
On Mon, Jun 6, 2011 at 2:45 PM, Mariette wrote:
Hi everyone,
I'm new in galaxy and I want to
retty limited to the change_format tag, isn't it ?
thx for your answers,
Jerome
Peter Cock a écrit :
On Tue, Jun 7, 2011 at 10:56 AM, Mariette wrote:
Thanks for the answer,
Still considering the number of outputed files problem. In my script I know
that if
a cleaning option is set 2 o
ot;
but it's not working ... it looks like between filter tag I should
provide a python test, am I missing something ?
thx,
Jerome
Peter Cock a écrit :
On Tue, Jun 7, 2011 at 11:38 AM, Mariette wrote:
I can only see the usage of the tag into the
to change format, is that correct
Hi everyone,
I'm new in galaxy and I want to create a component, so I have multiple
questions.
The component executes a script which takes different formats :
fasta|fastq|sff. As output it takes a folder, to do so I used the
extra_files_path attribute of an output data
(--out='$output.extra_f
