[ECOLOG-L] Stable Isotope Mixing Models using SIBER, SIAR, MixSIAR
Stable Isotope Mixing Models using SIBER, SIAR, MixSIAR (SIMM05) https://www.prstatistics.com/course/stable-isotope-mixing-models-using-r-simm05/ This course will be delivered by Dr Andrew Parnell and Dr Andrew Jackson (authors of the SIMM packages) in Glasgow City Centre from the 10th June - 14th June 2019. Course overview: This course will cover the concepts, technical background and use of stable isotope mixing models (SIMMs) with a particular focus on running them in R. This course will cover the concepts, technical background and use of stable isotope mixing models (SIMMs) with a particular focus on running them in R. Recently SIMMs have become a very popular tool for quantifying food webs and thus the diet of predators and prey in an ecosystem. Starting with only basic understanding of statistical models, we will cover the do’s and don’ts of using SIMMs with a particular focus on the widely used package SIAR and the more advanced MixSIAR. Participants will be taught some of the advanced features of these packages, which will enable them to produce a richer class of output, and are encouraged to bring their own data sets and problems to study during the round-table discussions. Monday 10th – Classes from 09:30 to 17:30 Basic concepts. Module 1: Introduction; why use a SIMM? Module 2: An introduction to bayesian statistics. Module 3: Differences between regression models and SIMMs. Practical: Revision on using R to load data, create plots and fit statistical models. Round table discussion: Understanding the output from a Bayesian model. Tuesday 11th – Classes from 09:30 to 17:30 Understanding and using SIAR. Module 4: Do’s and Don’ts of using SIAR. Module 5: The statistical model behind SIAR. Practical: Using SIAR for real-world data sets; reporting output; creating richer summaries and plots. Round table discussion: Issues when using simple SIMMs. Wednesday 12th – Classes from 09:30 to 17:30 SIBER and MixSIAR. Module 6: Creating and understanding Stable Isotope Bayesian Ellipses (SIBER). Module 7: What are the differences between SIAR and MixSIAR? Practical: Using MixSIAR on real world data sets; benefits over SIAR. Round table discussion: When to use which type of SIMM. Thursday 13th – Classes from 09:30 to 17:30 Advanced SIMMs. Module 8: Using MixSIAR for complex data sets: time series and mixed effects models. Module 9: Source grouping: when and how? Module 10: Building your own SIMM with JAGS. Practical: Running advanced SIMMs with JAGS. Round table discussion: Bring your own data set. Friday 14th – Classes from 09:30 to 16:00 Bring your own data set. Email oliverhoo...@prstatistics.com Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatistics.com (Behaviour and cognition) 1. January 21st – 25th 2019 STATISTICAL MODELLING OF TIME-TO-EVENT DATA USING SURVIVAL ANALYSIS: AN INTRODUCTION FOR ANIMAL BEHAVIOURISTS, ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (TTED01) Glasgow, Scotland, Dr. Will Hoppitt https://www.psstatistics.com/course/statistical-modelling-of-time-to-event-data-using-survival-analysis-tted01/ 2. January 21st – 25th 2019 ADVANCING IN STATISTICAL MODELLING USING R (ADVR08) Glasgow, Scotland, Dr. Luc Bussiere, Dr. Tom Houslay http://www.prstatistics.com/course/advancing-statistical-modelling-using-r-advr08/ 3. January 28th– February 1st 2019 AQUATIC ACOUSTIC TELEMETRY DATA ANALYSIS AND SURVEY DESIGN Glasgow, Scotland, VEMCO staff and affiliates https://www.prstatistics.com/course/aquatic-acoustic-telemetry-data-analysis-atda01/ 4. February 4th – 8th 2019 DESIGNING RELIABLE AND EFFICIENT EXPERIMENTS FOR SOCIAL SCIENCES (DRES01) Glasgow, Scotland, Dr. Daniel Lakens https://www.psstatistics.com/course/designing-reliable-and-effecient-experiments-for-social-sciences-dres01/ 5. 25th February – 1st March 2019 MOVEMENT ECOLOGY (MOVE02) Margam Discovery Centre, Wales, Dr. Luca Borger, Prof. Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move02/ 6. March 4th – 8th 2019 BIOACOUSTICS FOR ECOLOGISTS: HARDWARE, SURVEY DESIGN AND DATA ANALYSIS (BIAC01) Glasgow, Scotland, Dr. Paul Howden-Leach https://www.prstatistics.com/course/bioacoustics-for-ecologists-hardware-survey-design-and-data-analysis-biac01/ 7. March 11th – 15th 2019 ECOLOGICAL NICHE MODELLING USING R (ENMR03) Glasgow, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r-enmr03/ 8. March 18th – 22nd 2019 INTRODUCTION TO STATISTICS AND R FOR EVERYONE (IRFE01) Crete, GREECE, Dr Aristides (Aris) Moustakas https://www.prstatistics.com/course/introduction-to-statistics-and-r-for-anyone-irfe01/ 9. March 25th – 29th 2019 LANDSCAPE GENETIC DATA ANALYSIS USING R (LNDG03) Glasgow, Scotland, Prof. Rodney Dyer http://www.prstatistics.com/course/landscape-genetic-data-analysis-using-r-lndg03/
[ECOLOG-L] Ecological niche modelling using R
Ecological niche modelling using R (ENMR03) https://www.prstatistics.com/course/ecological-niche-modelling-using-r-enmr03/ This course will be delivered by Neftali Sillero in Glasgow City Centre from the 11th March - 15th March 2019. Course Overview: The course will cover the base theory of ecological niche modelling and its main methodologies. By the end of this 5-day practical course, attendees will have the capacity to perform ecological niche models and understand their results, as well as to choose and apply the correct methodology depending on the aim of their type of study and data. Ecological niche, species distribution, habitat distribution, or climatic envelope models are different names for similar mechanistic or correlative models, empirical or mathematical approaches to the ecological niche of a species, where different types of ecogeographical variables (environmental, topographical, human) are related with a species physiological data or geographical locations, in order to identify the factors limiting and defining the species’ niche. ENMs have become popular due to the need for efficiency in the design and implementation of conservation management. The course will be mainly practical, with some theoretical lectures. All modelling processes and ions will be performed with R, the free software environment for statistical computing and graphics (http://www.r-project.org/). Attendees will learn to use modelling algorithms like Maxent, Bioclim, Domain, and logistic regressions, and R packages for computing ENMs like Dismo and Biomod2. Also, students will learn to compare different ecological niche models using the Ecospat package. Course Programme Monday 11th – Classes from 09:30 to 17:30 Elementary concepts on Ecological Niche Modelling Module 1: Introduction to ENM theory. Definition of ecological niche model; introduction to species ecological niche theory, types of ecological niches, types of ENM, diagram BAM, ENMs as approximations to species’ niches. Module 2: Problems and limitations on ENM. Assumptions and uncertainties, equilibrium concept, niche conservatism, autocorrelation and intensity, sample size, correlation of environmental variables, size and form of study area, thresholds, model validation, model projections. Module 3: Methods on ENM. Mechanistic and correlative models. Overlap Analysis, Biomod, Domain, Habitat, Distance of Mahalanobis, ENFA, GARP, Maxent, Logistic regression, Generalised Linear Models, Generalised Additive Models, Generalised Boosted Regression Models, Random Forest, Support Vector Machines, Artificial Neural Network. Module 4: Conceptual and practice steps to calculate ENM. How to make an ENM step-by-step. Module 5: Applications of ENM. Ecological niche identification, Identification of contact zones, Integration with genetical data, Species expansions, Species invasions, Dispersion hypotheses, Species conservation status, Prediction of future conservation problems, Projection to future and past climate change scenarios, Modelling past species, Modelling species richness, Road-kills, Diseases, Windmills, Location of protected areas. Tuesday 12th – Classes from 09:30 to 17:30 Prepare environmental variables and run ecological niche models with dismo package. Module 6: Preparing variables. Choosing environmental data sources, Downloading variables, Clipping variables, Aggregating variables, Checking pixel size, Checking raster limits, Checking NoData, Correlating variables. Module 7: Dismo practice. How to run an ENM using the R package dismo. Wednesday 13th – Classes from 09:30 to 17:30 Run ecological niche models with Biomod2 package and Maxent. Module 8: Biomod2 practice. How to run an ENM using the R package Biomod2. Module 9: Maxent practice. How to run an ENM using the R packages dismo and Biomod2 as well as Maxent software. Thursday 14th – Classes from 09:30 to 17:30 Compare ecological niche models with ecospat. Module 10: Ecospat practice. Compare statistically two different ecological niche models using the R package Ecospat. Module 11: Students’ talks. Attendees will have the opportunity to present their own data and analyse which is the best way to successfully obtain an ENM. Friday 15th – Classes from 09:30 to 16:00 Run ecological niche models with your own data. Module 12: Final practical. In this practical, the students will run ENM with their own data or with a new dataset, applying all the methods showed during the previous days. Email oliverhoo...@prstatistics.com Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatistics.com (Behaviour and cognition) 1. January 21st – 25th 2019 STATISTICAL MODELLING OF TIME-TO-EVENT DATA USING SURVIVAL ANALYSIS: AN INTRODUCTION FOR ANIMAL BEHAVIOURISTS, ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (TTED01) Glasgow, Scotland, Dr. Will Hoppitt
[ECOLOG-L] FINAL CALL - Aquatic Acoustic Telemetry Data Analysis
Aquatic Acoustic Telemetry Data Analysis (ATDA01) https://www.prstatistics.com/course/aquatic-acoustic-telemetry-data-analysis-atda01/ This course will be delivered by VEMCO (a leading company in the field of aquatic acoustic telemetry) in Glasgow City Centre form the 28th January - 1 February 2019. Course Overview: Acoustic telemetry has become increasingly popular as a method of choice for monitoring the movements and behaviour of aquatic animals globally. Increasingly smaller tags along with improvements in battery technology have allowed for tagging a wide variety of species and life stages, enabling monitoring of individuals as small as salmon smolts and as large as whale sharks for periods from 30 days to 10 years. Receiver technology also continues to evolve and increasingly allows for data to be collected at finer spatial and temporal scales than ever before. In addition, with more and more acoustic diagnostics information available telemetry datasets are becoming richer, allowing more detailed analyses of system performance over time and more robust interpretation of animal detection data. In this course you will learn about the different types of Vemco acoustic telemetry technology and their applicability for use in different study environments and in answering a variety of research questions. Advantages and limitations of the different types of equipment will be discussed, along with resulting study design considerations such as hardware selection and tag programming considerations. The planning and testing phases of any acoustic telemetry study are critical to success, and you will learn about the importance of testing the suitability of your environment for acoustic telemetry, testing your array once it is deployed, and monitoring your system performance throughout the duration of your study. We will analyze an example range test dataset and discuss the implications of range test results on array design. You will also learn how to test your study deployment in the field and what metrics are best used to determine whether the array is operating as planned. Finally, because interpretation of acoustic telemetry data and inferring animal behaviour from these data is often confounded by array performance questions, this course will teach you techniques for assessing system performance to aid in the correct interpretation of animal detection data. Since telemetry datasets are growing larger all of the time, data management is becoming increasingly challenging. During this course you will learn to perform basic quality assurance on your data (removal of false detections, time correction of detection data) and basic filtering techniques (identifying residency events, removing duplicate detections) for large datasets. Finally, this course will include extensive discussion of the proper design and logistics of fine-scale positioning studies and will provide an overview of the different types of analyses that are commonly performed with positional data. You will also have the opportunity to discuss your own telemetry studies with the experts during a Q session on the final day of the course. Bring your own data and your questions! Course Programme Monday 28th – Classes from 09:30 to 17:30 Lecture 1 1) Introduction to Acoustic Telemetry Acoustic vs radio, satellite, PIT tags History of acoustic telemetry Comparison of acoustic technologies from different manufacturers 2) How Vemco acoustics work Continuous vs coded vs HR (High Residence) transmission systems Pinger tags vs sensor tags 3) Vemco Equipment Overview Applications of 69 kHz line Applications of 180 kHz line Applications of HR (High Residence) technology 4) Designing a Successful Study Hardware Selection Tag Programming Considerations Range Testing Using Sentinel Tags 5) Vemco Equipment Demo PPM vs HR coding systems Surgery techniques Tuesday 29th – Classes from 09:30 to 17:30 Lecture 2 1) Preparing for Deployment Preparing your receivers Initialization tips Setting up built-in transmitters 2) System performance considerations Quiet vs noisy locations Thermoclines River flow considerations Mooring design and receiver attachment 3) Testing your deployment Using transponding data (includes transponding demonstration) Using offloaded test data/VUE (includes demonstration) Important considerations during testing Practical 1 4) Case Study 1 – River migration study (traditional PPM coding example) Study Design Range test analysis example Determining receiver spacing Tag Programming Wednesday 30th – Classes from 09:30 to 17:30 1) Practical 2 Data Management (using Case Study 1 data or other example datasets Assigning stations in VUE Time Correction Identifying false detections Using VUE’s FDA tool Marking questionable detections in your exported data 2) Filtering your data Building filters in VUE Identifying residency events What to do with duplicate detections Sensor Tag Data Bringing in
[ECOLOG-L] Introduction to GIS and spatial analysis with R (GISR01)
Introduction to GIS and spatial analysis with R (GISR01) https://www.prstatistics.com/course/introduction-to-gis-and-spatial-analysis-with-r-gisr01/ This course will be delivered by Luca Nelli form the 22nd - 26th April 2019 in Glasgow City Centre. Course overview: This course aims at providing audience with the essential tools for working with spatially explicit data within the statistical environment R, with particular reference to ecological applications (e.g. species distribution models, resources and habitat selection, home range analyses…). Practical sessions will primarily use the free statistical software, R – prior experience (even if some practice before you come) will be useful. Example data will be provided but participants may also bring their own data. Intended Audience: This workshop is aimed at students and researchers who already have a basic knowledge of R and want to explore its GIS potential for ecological application. The skills learnt can also be applied by management and environmental professionals in government and industry. Course Programme: Monday 22nd – Classes from 09:30 to 17:30 Introduction to GIS: overview of main softwares. File formats. Coordinate reference systems. Types and structure of spatial objects in R Generating and manipulating spatial objects, projections and transformations. Overview of main libraries for spatial objects: sp, sf, rgeos, rgdal, leaflet, mapview, raster. Tuesday 23rd – Classes from 09:00 to 17:00 Introduction to raster data. Plot and visualisation of raster. Informative and non-informative rasters. Terrain tools. RasterStack. Operations with raster. Wednesday 24th – Classes from 09:30 to 17:30 Vector data: from simple points to SpatialPointsDataFrame (and SpatialLinesDataFrame and SpatialPolygonsDataFrame). How to import and manipulate vector data. Plot and visualisation of vectors. Geoprocessing tools. Overlay, clip, intersection, union, difference. Proximity analyses. Conversion tools (vector to raster and viceversa). Thursday 25th – Classes from 09:30 to 17:30 More advanced GIS analyses in R: How to interact vector and raster. Cropping and masking spatial objects. Zonal statistics and landscape metrics. Extracting covariate data and other simple GIS operations in R. Friday 26th – Classes from 09:30 to 16:00 Combining QGIS and R. Plotting interactive maps with leaflet and mapview.Email oliverhoo...@prstatistics.com Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatistics.com (Behaviour and cognition) 1. January 21st – 25th 2019 STATISTICAL MODELLING OF TIME-TO-EVENT DATA USING SURVIVAL ANALYSIS: AN INTRODUCTION FOR ANIMAL BEHAVIOURISTS, ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (TTED01) Glasgow, Scotland, Dr. Will Hoppitt https://www.psstatistics.com/course/statistical-modelling-of-time-to-event-data-using-survival-analysis-tted01/ 2. January 21st – 25th 2019 ADVANCING IN STATISTICAL MODELLING USING R (ADVR08) Glasgow, Scotland, Dr. Luc Bussiere, Dr. Tom Houslay http://www.prstatistics.com/course/advancing-statistical-modelling-using-r-advr08/ 3. January 28th– February 1st 2019 AQUATIC ACOUSTIC TELEMETRY DATA ANALYSIS AND SURVEY DESIGN Glasgow, Scotland, VEMCO staff and affiliates https://www.prstatistics.com/course/aquatic-acoustic-telemetry-data-analysis-atda01/ 4. February 4th – 8th 2019 DESIGNING RELIABLE AND EFFICIENT EXPERIMENTS FOR SOCIAL SCIENCES (DRES01) Glasgow, Scotland, Dr. Daniel Lakens https://www.psstatistics.com/course/designing-reliable-and-effecient-experiments-for-social-sciences-dres01/ 5. February 11th – 15th 2019 REPRODUCIBLE DATA SCIENCE FOR POPULATION GENETICS Glasgow, Scotland, Dr. Thibaut Jombart, Dr. Zhain Kamvar https://www.prstatistics.com/course/reproducible-data-science-for-population-genetics-rdpg02/ 6. 25th February – 1st March 2019 MOVEMENT ECOLOGY (MOVE02) Margam Discovery Centre, Wales, Dr. Luca Borger, Prof. Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move02/ 7. March 4th – 8th 2019 BIOACOUSTICS FOR ECOLOGISTS: HARDWARE, SURVEY DESIGN AND DATA ANALYSIS (BIAC01) Glasgow, Scotland, Dr. Paul Howden-Leach https://www.prstatistics.com/course/bioacoustics-for-ecologists-hardware-survey-design-and-data-analysis-biac01/ 8. March 11th – 15th 2019 ECOLOGICAL NICHE MODELLING USING R (ENMR03) Glasgow, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r-enmr03/ 9. March 18th – 22nd 2019 INTRODUCTION TO STATISTICS AND R FOR EVERYONE (IRFE01) Crete, GREECE, Dr Aristides (Aris) Moustakas https://www.prstatistics.com/course/introduction-to-statistics-and-r-for-anyone-irfe01/ 10. March 25th – 29th 2019 LANDSCAPE GENETIC DATA ANALYSIS USING R (LNDG03) Glasgow, Scotland, Prof. Rodney Dyer
[ECOLOG-L] Introduction to QGIS for ecologists (QGSE01)
Introduction to QGIS for ecologists (QGSE01) https://www.prstatistics.com/course/introduction-to-qgis-for-ecologists-qgse01/ This course will be delivered by Luca Nelli form the 15th - 19th April 2019 in Glasgow City Centre. Course overview: This course aims at providing audience with the basic tools for ecological data management and analyses, through the Geographical Information System software QGIS, with the particular objective of creating spatially explicit datasets for ecological analyses (e.g. species distribution models, resources and habitat selection, home range analyses…). Practical sessions will use the free software QGIS – prior experience is not necessary. Example data will be provided but participants may also bring their own data. Intended Audience: Students and early career researchers without any prior knowledge of GIS software, who are interested in using such tools for ecological application. The skills learnt can also be applied by management and environmental professionals in government and industry. Course Programme: Monday 15th – Classes from 09:30 to 17:30 Introduction to QGIS: basic tools, main plugin, file formats, layer management. Coordinate reference systems. Types and structure of spatial objects in QGIS. Generating and manipulating spatial objects, projections and transformations. Tuesday 16th – Classes from 09:00 to 17:00 Raster data: plot and visualisation of raster. Informative and non-informative raster. Terrain tools. Operations with raster. Wednesday 17th – Classes from 09:30 to 17:30 Vector data: points, lines, polygons. How to import and manipulate vector data. Plot and visualisation of vectors. Geoprocessing tools: Overlay, clip, intersection, union, difference. Thursday 18th – Classes from 09:30 to 17:30 Selection tools: by feature and by location. Basic spatial analyses: cropping and masking spatial objects. Zonal statistics and landscape metrics. Extracting covariate data and other simple GIS operations. Friday 19th – Classes from 09:30 to 16:00 GPS and mobile GIS. Online resources. Map composer: creating maps for publications, poster, and reports. Email oliverhoo...@prstatistics.com Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatistics.com (Behaviour and cognition) 1. January 21st – 25th 2019 STATISTICAL MODELLING OF TIME-TO-EVENT DATA USING SURVIVAL ANALYSIS: AN INTRODUCTION FOR ANIMAL BEHAVIOURISTS, ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (TTED01) Glasgow, Scotland, Dr. Will Hoppitt https://www.psstatistics.com/course/statistical-modelling-of-time-to-event-data-using-survival-analysis-tted01/ 2. January 21st – 25th 2019 ADVANCING IN STATISTICAL MODELLING USING R (ADVR08) Glasgow, Scotland, Dr. Luc Bussiere, Dr. Tom Houslay http://www.prstatistics.com/course/advancing-statistical-modelling-using-r-advr08/ 3. January 28th– February 1st 2019 AQUATIC ACOUSTIC TELEMETRY DATA ANALYSIS AND SURVEY DESIGN Glasgow, Scotland, VEMCO staff and affiliates https://www.prstatistics.com/course/aquatic-acoustic-telemetry-data-analysis-atda01/ 4. February 4th – 8th 2019 DESIGNING RELIABLE AND EFFICIENT EXPERIMENTS FOR SOCIAL SCIENCES (DRES01) Glasgow, Scotland, Dr. Daniel Lakens https://www.psstatistics.com/course/designing-reliable-and-effecient-experiments-for-social-sciences-dres01/ 5. February 11th – 15th 2019 REPRODUCIBLE DATA SCIENCE FOR POPULATION GENETICS Glasgow, Scotland, Dr. Thibaut Jombart, Dr. Zhain Kamvar https://www.prstatistics.com/course/reproducible-data-science-for-population-genetics-rdpg02/ 6. 25th February – 1st March 2019 MOVEMENT ECOLOGY (MOVE02) Margam Discovery Centre, Wales, Dr. Luca Borger, Prof. Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move02/ 7. March 4th – 8th 2019 BIOACOUSTICS FOR ECOLOGISTS: HARDWARE, SURVEY DESIGN AND DATA ANALYSIS (BIAC01) Glasgow, Scotland, Dr. Paul Howden-Leach https://www.prstatistics.com/course/bioacoustics-for-ecologists-hardware-survey-design-and-data-analysis-biac01/ 8. March 11th – 15th 2019 ECOLOGICAL NICHE MODELLING USING R (ENMR03) Glasgow, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r-enmr03/ 9. March 18th – 22nd 2019 INTRODUCTION TO STATISTICS AND R FOR EVERYONE (IRFE01) Crete, GREECE, Dr Aristides (Aris) Moustakas https://www.prstatistics.com/course/introduction-to-statistics-and-r-for-anyone-irfe01/ 10. March 25th – 29th 2019 LANDSCAPE GENETIC DATA ANALYSIS USING R (LNDG03) Glasgow, Scotland, Prof. Rodney Dyer http://www.prstatistics.com/course/landscape-genetic-data-analysis-using-r-lndg03/ 11. April 1st – 5th 2019 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R (IPSY01) Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre
[ECOLOG-L] Machine learning using R (MLUR01)
Machine learning using R (MLUR01) https://www.prstatistics.com/course/machine-learning-using-r-mlur01/ This course will be delivered by Dr Aristides (Aris) Moustakas from the 8th - 12th April 2019 in Glasgow City Centre. Course Overview: his workshop will provide attendees with the opportunity to learn how to use machine learning to analyze data coming from diverse data domains and scientific disciplines and without necessarily prior knowledge of the scientific discipline where the data are coming from. Attendees will learn how to use R and several R packages including classification and regression trees, ensembles and bagging, random forests, neural networks, and boosting (learning from mistakes). These techniques will be used for data classification, determining goodness-of-fit, predictive modelling (using explanatory variables to predict a variable of interest), and ultimately quantify results, errors, and uncertainty. Attendees will also learn how to produce high quality graphs and figures using R. Intended Audience: This workshop is ideal for any scientists seeking an introduction to quantitative data analysis using machine learning coming from diverse scientific disciplines such as biology, ecology, medicine, psychology, economics, or education. No prior knowledge of machine learning ir required. However basic prior R knowledge is required (loading data, loading R packages, basic R environment and basic R commands). Course Programme: Monday 8th – Classes from 09:30 to 17:30 Day 1 Theory Revision: linear regression analysis, classification and regression trees, assumptions, and limitations Introduction to artificial intelligence Introduction to machine learning, assumptions, advantages, over-fitting Practical Data analysis with Generalized linear models Data analysis with classification and regression trees Analysis of own data Tuesday 9th – Classes from 09:30 to 17:30 Day 2 Theory Ensembles and bagging Random forests Learning from mistakes Practical Analysis of data with Random Forests: Supervised learning, training assessing predictive accuracy Applications with data from social sciences, economics, and biology Wednesday 10th – Classes from 09:30 to 17:30 Day 3 Theory Artificial Neural Networks Support Vector Machines Practical Classification and regression with ANN and SVM ROC Curves Variable importance Thursday 11th – Classes from 09:30 to 17:30 Day 4 Theory Special topics: Spatial data, spatial analysis, spatial autocorrelation Spatial analysis with machine learning Dealing with factors and binary data Factor analysis with machine learning Practical Spatial analysis with machine learning Factor analysis with machine learning Friday 12th – Classes from 09:30 to 16:00 Day 5 Theory Special topics: Time replicated data, time series, and temporal autocorrelation Temporal analysis with machine learning Comparing statistical methods (etc GLM, GAM) with machine learning methods Parameter tuning Practical Temporal analysis with machine learning Parameter tuning Comparing methods Discussions with the tutor and the group regarding own datasets Email oliverhoo...@prstatistics.com Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatistics.com (Behaviour and cognition) 1. January 21st – 25th 2019 STATISTICAL MODELLING OF TIME-TO-EVENT DATA USING SURVIVAL ANALYSIS: AN INTRODUCTION FOR ANIMAL BEHAVIOURISTS, ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (TTED01) Glasgow, Scotland, Dr. Will Hoppitt https://www.psstatistics.com/course/statistical-modelling-of-time-to-event-data-using-survival-analysis-tted01/ 2. January 21st – 25th 2019 ADVANCING IN STATISTICAL MODELLING USING R (ADVR08) Glasgow, Scotland, Dr. Luc Bussiere, Dr. Tom Houslay http://www.prstatistics.com/course/advancing-statistical-modelling-using-r-advr08/ 3. January 28th– February 1st 2019 AQUATIC ACOUSTIC TELEMETRY DATA ANALYSIS AND SURVEY DESIGN Glasgow, Scotland, VEMCO staff and affiliates https://www.prstatistics.com/course/aquatic-acoustic-telemetry-data-analysis-atda01/ 4. February 4th – 8th 2019 DESIGNING RELIABLE AND EFFICIENT EXPERIMENTS FOR SOCIAL SCIENCES (DRES01) Glasgow, Scotland, Dr. Daniel Lakens https://www.psstatistics.com/course/designing-reliable-and-effecient-experiments-for-social-sciences-dres01/ 5. February 11th – 15th 2019 REPRODUCIBLE DATA SCIENCE FOR POPULATION GENETICS Glasgow, Scotland, Dr. Thibaut Jombart, Dr. Zhain Kamvar https://www.prstatistics.com/course/reproducible-data-science-for-population-genetics-rdpg02/ 6. 25th February – 1st March 2019 MOVEMENT ECOLOGY (MOVE02) Margam Discovery Centre, Wales, Dr. Luca Borger, Prof. Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move02/ 7. March 4th – 8th 2019 BIOACOUSTICS FOR ECOLOGISTS: HARDWARE, SURVEY DESIGN AND DATA ANALYSIS (BIAC01) Glasgow, Scotland, Dr. Paul Howden-Leach
[ECOLOG-L] Individual based models using R (and netlogo) (IBMS01)
Individual based models using R (and netlogo) (IBMS01) https://www.prstatistics.com/course/individual-based-models-using-r-and-netlogo-ibms01/ This course will be delivered by Dr Aristides (Aris) Moustakas from the 1st - 5th April 2019 in Glasgow City Centre. Course Overview: This workshop will provide attendees with the opportunity to learn how (1) to understand; (2) run simulations of readily available Individual Based Models (IBMs); (3) analyze the outputs of IBMs; (4) parameterize IBMs, and (5) code relatively basic IBMs in R and NetLogo. Examples and applications will include cases from diverse domains and scientific disciplines such as social sciences, biology, and environmental sciences. Intended Audience: This workshop is ideal for any scientists seeking an introduction as well as functional use in terms of parameterizing, simulating, and analyzing outputs of IBMs; some moderate skills of programming and own coding will also be acquired. This course will suite attendees from a diverse range of scientific disciplines such as biology, ecology, psychology, economics, or education. No prior knowledge of programming in R or Netlogo are required. However basic to moderate prior R knowledge is required (loading data, loading R packages, basic R environment and basic R commands). Course Programme: Monday `1st – Classes from 09:30 to 17:30 Theory Differences between statistical modelling and process-based predictive models Introduction to cellular automata Introduction to Individual & Agent Based Models Practical Running simulations with readily coded IBMs in Netlogo Application of cellular automata: coding the game of life in R Tuesday 2nd – Classes from 09:30 to 17:30 Theory Introduction to scientific programming Introduction to Netlogo Practical Go through a coded IBM in NetLogo and understand the code Code IBMs in R (full code provided and explained) Run simulations of the IBM Wednesday 3rd – Classes from 09:30 to 17:30 Theory Complex vs. simple models How many processes & details to include Combining IBMs with statistical analysis Practical Running simple vs more complex coded IBMs Exporting outputs from IBMs Statistical analysis of IBM outputs Thursday 4th – Classes from 09:00 to 17:00 Theory Calibrating IBMs Validating IBMs Sensitivity of input parameters Practical Coding IBMs in R Analyzing IBM outputs of varying parameter inputs Friday 5th – Classes from 09:30 to 16:00 Theory Special topics: Examples of IBMs across disciplines IBMs providing new insights & ground-breaking results Practical Understanding the description, replicating and coding a journal-published IBM Discussions with the tutor and the group of own IBMs and coding Email oliverhoo...@prstatistics.com Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatistics.com (Behaviour and cognition) 1. January 21st – 25th 2019 STATISTICAL MODELLING OF TIME-TO-EVENT DATA USING SURVIVAL ANALYSIS: AN INTRODUCTION FOR ANIMAL BEHAVIOURISTS, ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (TTED01) Glasgow, Scotland, Dr. Will Hoppitt https://www.psstatistics.com/course/statistical-modelling-of-time-to-event-data-using-survival-analysis-tted01/ 2. January 21st – 25th 2019 ADVANCING IN STATISTICAL MODELLING USING R (ADVR08) Glasgow, Scotland, Dr. Luc Bussiere, Dr. Tom Houslay http://www.prstatistics.com/course/advancing-statistical-modelling-using-r-advr08/ 3. January 28th– February 1st 2019 AQUATIC ACOUSTIC TELEMETRY DATA ANALYSIS AND SURVEY DESIGN Glasgow, Scotland, VEMCO staff and affiliates https://www.prstatistics.com/course/aquatic-acoustic-telemetry-data-analysis-atda01/ 4. February 4th – 8th 2019 DESIGNING RELIABLE AND EFFICIENT EXPERIMENTS FOR SOCIAL SCIENCES (DRES01) Glasgow, Scotland, Dr. Daniel Lakens https://www.psstatistics.com/course/designing-reliable-and-effecient-experiments-for-social-sciences-dres01/ 5. February 11th – 15th 2019 REPRODUCIBLE DATA SCIENCE FOR POPULATION GENETICS Glasgow, Scotland, Dr. Thibaut Jombart, Dr. Zhain Kamvar https://www.prstatistics.com/course/reproducible-data-science-for-population-genetics-rdpg02/ 6. 25th February – 1st March 2019 MOVEMENT ECOLOGY (MOVE02) Margam Discovery Centre, Wales, Dr. Luca Borger, Prof. Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move02/ 7. March 4th – 8th 2019 BIOACOUSTICS FOR ECOLOGISTS: HARDWARE, SURVEY DESIGN AND DATA ANALYSIS (BIAC01) Glasgow, Scotland, Dr. Paul Howden-Leach https://www.prstatistics.com/course/bioacoustics-for-ecologists-hardware-survey-design-and-data-analysis-biac01/ 8. March 11th – 15th 2019 ECOLOGICAL NICHE MODELLING USING R (ENMR03) Glasgow, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r-enmr03/ 9. March 18th – 22nd 2019 INTRODUCTION TO STATISTICS AND R FOR EVERYONE (IRFE01) Crete, GREECE, Dr
[ECOLOG-L] Stable Isotope Mixing Models using SIBER, SIAR, MixSIAR (SIMM05)
Stable Isotope Mixing Models using SIBER, SIAR, MixSIAR (SIMM05) https://www.prstatistics.com/course/stable-isotope-mixing-models-using-r-simm05/ This course will be delivered by Dr Andrew Parnell and Dr. Andrew Jackson and will run from the 10th - 14th June 2019 in Glasgow City Centre, Scotland Course overview: This course will cover the concepts, technical background and use of stable isotope mixing models (SIMMs) with a particular focus on running them in R. This course will cover the concepts, technical background and use of stable isotope mixing models (SIMMs) with a particular focus on running them in R. Recently SIMMs have become a very popular tool for quantifying food webs and thus the diet of predators and prey in an ecosystem. Starting with only basic understanding of statistical models, we will cover the do’s and don’ts of using SIMMs with a particular focus on the widely used package SIAR and the more advanced MixSIAR. Participants will be taught some of the advanced features of these packages, which will enable them to produce a richer class of output, and are encouraged to bring their own data sets and problems to study during the round-table discussions. Monday 10th – Classes from 09:30 to 17:30 Basic concepts. Module 1: Introduction; why use a SIMM? Module 2: An introduction to bayesian statistics. Module 3: Differences between regression models and SIMMs. Practical: Revision on using R to load data, create plots and fit statistical models. Round table discussion: Understanding the output from a Bayesian model. Tuesday 11th – Classes from 09:30 to 17:30 Understanding and using SIAR. Module 4: Do’s and Don’ts of using SIAR. Module 5: The statistical model behind SIAR. Practical: Using SIAR for real-world data sets; reporting output; creating richer summaries and plots. Round table discussion: Issues when using simple SIMMs. Wednesday 12th – Classes from 09:30 to 17:30 SIBER and MixSIAR. Module 6: Creating and understanding Stable Isotope Bayesian Ellipses (SIBER). Module 7: What are the differences between SIAR and MixSIAR? Practical: Using MixSIAR on real world data sets; benefits over SIAR. Round table discussion: When to use which type of SIMM. Thursday 13th – Classes from 09:30 to 17:30 Advanced SIMMs. Module 8: Using MixSIAR for complex data sets: time series and mixed effects models. Module 9: Source grouping: when and how? Module 10: Building your own SIMM with JAGS. Practical: Running advanced SIMMs with JAGS. Round table discussion: Bring your own data set. Friday 14th – Classes from 09:30 to 16:00 Bring your own data set. Email oliverhoo...@prstatistics.com Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatistics.com (Behaviour and cognition) 1. November 26th – 30th 2018 FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION (FEER01) Glasgow, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to-ecosystem-theory-and-computation-feer01/ 2. December 3rd – 7th 2018 INTRODUCTION TO BAYESIAN DATA ANALYSIS FOR SOCIAL AND BEHAVIOURAL SCIENCES USING R AND STAN (BDRS01) Glasgow, Dr. Mark Andrews https://www.psstatistics.com/course/introduction-to-bayesian-data-analysis-for-social-and-behavioural-sciences-using-r-and-stan-bdrs01/ 3. January 21st – 25th 2019 STATISTICAL MODELLING OF TIME-TO-EVENT DATA USING SURVIVAL ANALYSIS: AN INTRODUCTION FOR ANIMAL BEHAVIOURISTS, ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (TTED01) Glasgow, Scotland, Dr. Will Hoppitt https://www.psstatistics.com/course/statistical-modelling-of-time-to-event-data-using-survival-analysis-tted01/ 4. January 21st – 25th 2019 ADVANCING IN STATISTICAL MODELLING USING R (ADVR08) Glasgow, Scotland, Dr. Luc Bussiere, Dr. Tom Houslay http://www.prstatistics.com/course/advancing-statistical-modelling-using-r-advr08/ 5. January 28th– February 1st 2019 AQUATIC ACOUSTIC TELEMETRY DATA ANALYSIS AND SURVEY DESIGN Glasgow, Scotland, VEMCO staff and affiliates https://www.prstatistics.com/course/aquatic-acoustic-telemetry-data-analysis-atda01/ 6. February 4th – 8th 2019 DESIGNING RELIABLE AND EFFICIENT EXPERIMENTS FOR SOCIAL SCIENCES (DRES01) Glasgow, Scotland, Dr. Daniel Lakens https://www.psstatistics.com/course/designing-reliable-and-effecient-experiments-for-social-sciences-dres01/ 7. February 11th – 15th 2019 REPRODUCIBLE DATA SCIENCE FOR POPULATION GENETICS Glasgow, Scotland, Dr. Thibaut Jombart, Dr. Zhain Kamvar https://www.prstatistics.com/course/reproducible-data-science-for-population-genetics-rdpg02/ 8. 25th February – 1st March 2019 MOVEMENT ECOLOGY (MOVE02) Margam Discovery Centre, Wales, Dr. Luca Borger, Prof. Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move02/ 9. March 4th – 8th 2019 BIOACOUSTICS FOR
[ECOLOG-L] AUSTRALIA - Statistical toolkit for ecologists
Statistical toolkit for ecologists (STKE01) https://www.prstatistics.com/course/statistical-toolkit-for-ecologists-stke01/ This course will be delivered by Dr Aristides (Aris) Moustakas and will run from the 21st - 24th May 2019 at Myuna Bay Sport and Recreation, Wangi Road, Myuna Bay, New South Wales 2264 Australia. This course is preceded by an introduction to R which will get students with little to R no experience up speed to take this slightly more advanced course - a discount is available if both courses are booked. Course Overview: This course will cover advanced statistics regarding the analysis of data using comprehensive and state-of-the-art techniques. All methods will be illustrated using the free, open-source software package R. The course is designed for attendees that have a basic knowledge of R and elementary statistics and wish to advance this to up-to-date journal publication or conference proceedings standards. The course will cover mixed effects models, model selection and multi-model inference, generalized linear models (i.e. analysis of non-normally distributed datasets), random and fixed effects, variance nesting and spatial as well as temporal elements of data analytics. Participants will gain a deeper understanding of the models being fitted, and be able interpret the results appropriately as well as produce quality graphs. Participants are encouraged to bring their own data sets for applying the techniques taught as well as potential discussion with the course tutor. Tuesday 21st – Classes from 09:00 to 17:00 Day 1 Theory: Introduction, example data sets and challenges in their analyses Revision: likelihood and inference Revision: linear regression, GLMs Practical: Analysing some example data sets Fitting generalized linear models in real normally-distributed datasets Checking model assumptions and residuals Wednesday 22nd – Classes from 09:00 to 17:00 Day 2 Theory: Generalizing the regression for many dependent variables Model selection and multi-model inference What is a fixed and what a random effect? Plotting effects Practical: A full normally distributed data analysis, model fitting, ANOVA, residuals, plotting effects reporting results Fitting mixed effects models with fixed and random effects Nesting variances in random effects Thursday 23rd – Classes from 09:00 to 17:00 Day 3 Theory: Dealing with non-normally distributed data Identifying the distribution of the data Generalizing the linear model for non-normally distributed data Plotting quality graphs Practical : Identifying the distribution of the data through AIC model selection Fitting the best model residual error structure in a generalised linear model Understanding, reporting, plotting, and discussing results Friday 24th – Classes from 09:00 to 16:00 Day 4 Theory: Dealing with spatial & temporal data Advantages of including spatial information Problems induced by spatial or temporal autocorrelation Practical: Plotting spatial data Spatial analysis Accounting for spatial or temporal autocorrelation Email oliverhooo...@prstatistics.com Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatistics.com (Behaviour and cognition) 1. November 26th – 30th 2018 FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION (FEER01) Glasgow, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to-ecosystem-theory-and-computation-feer01/ 2. December 3rd – 7th 2018 INTRODUCTION TO BAYESIAN DATA ANALYSIS FOR SOCIAL AND BEHAVIOURAL SCIENCES USING R AND STAN (BDRS01) Glasgow, Dr. Mark Andrews https://www.psstatistics.com/course/introduction-to-bayesian-data-analysis-for-social-and-behavioural-sciences-using-r-and-stan-bdrs01/ 3. January 21st – 25th 2019 STATISTICAL MODELLING OF TIME-TO-EVENT DATA USING SURVIVAL ANALYSIS: AN INTRODUCTION FOR ANIMAL BEHAVIOURISTS, ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (TTED01) Glasgow, Scotland, Dr. Will Hoppitt https://www.psstatistics.com/course/statistical-modelling-of-time-to-event-data-using-survival-analysis-tted01/ 4. January 21st – 25th 2019 ADVANCING IN STATISTICAL MODELLING USING R (ADVR08) Glasgow, Scotland, Dr. Luc Bussiere, Dr. Tom Houslay http://www.prstatistics.com/course/advancing-statistical-modelling-using-r-advr08/ 5. January 28th– February 1st 2019 AQUATIC ACOUSTIC TELEMETRY DATA ANALYSIS AND SURVEY DESIGN Glasgow, Scotland, VEMCO staff and affiliates https://www.prstatistics.com/course/aquatic-acoustic-telemetry-data-analysis-atda01/ 6. February 4th – 8th 2019 DESIGNING RELIABLE AND EFFICIENT EXPERIMENTS FOR SOCIAL SCIENCES (DRES01) Glasgow, Scotland, Dr. Daniel Lakens https://www.psstatistics.com/course/designing-reliable-and-effecient-experiments-for-social-sciences-dres01/ 7. February 11th – 15th 2019 REPRODUCIBLE
[ECOLOG-L] Statistical modelling of time-to-event data using survival analysis: an introduction for animal behaviourists, ecologists and evolutionary biologists (TTED01)
Statistical modelling of time-to-event data using survival analysis: an introduction for animal behaviourists, ecologists and evolutionary biologists (TTED01) https://www.psstatistics.com/course/statistical-modelling-of-time-to-event-data-using-survival-analysis-tted01/ This course will be delivered by Dr. Will Hoppitt for the 21st - 25th January 2019 in Glasgow City Centre Course Overview: Survival analysis is a set of statistical methods initially designed to analyse data giving the times at which individuals die, and assess the effect that different predictor variables have on the rate of death. However, its applications are much broader than this: it can be used to analyse any time-to-event data. Ecologists and evolutionary biologists often encounter data of this kind. Often factors influencing survival itself will be of interest. But there are many other cases, e.g. what factors influence the time of first breeding? Or the time taken to reach maturity? Animal behaviourists too will encounter this type of data frequently, e.g. what factors influence the time it takes to learn a novel behaviour pattern? Or the time to respond to a stimulus? etc. And yet the techniques of survival analysis are not generally well known by researchers in these disciplines. In this course, you will learn how to apply survival analysis models to quantify the effect that predictor variables (continuous or discrete) have on the rate at which events occur, and how to test hypotheses about these effects. We will focus on a flexible modelling technique called the Cox proportional hazards model, which makes minimal assumptions about the underlying probability distributions. You will learn how to fit and interpret these models, how to evaluate its assumptions, and how to extend it to model time dependent variables, random effects, multistate models and competing risks models. Course Programme Monday 21st – Classes from 09:30 to 17:30 Module 1: Statistical modelling of rates and times Module 2: Parametric survival models and the Cox model Tuesday 22nd – Classes from 09:30 to 17:30 Module 3: Fitting Cox models Module 4: Interpreting Cox Models Wednesday 23rd – Classes from 09:30 to 17:30 Module 5: Evaluating the proportional hazard assumption Module 6: Stratified Cox models Thursday 24th – Classes from 09:30 to 17:30 Module 7: Time dependent variables Module 8: Frailty Models and Multistate models Friday 25th – Classes from 09:30 to 17:30 Module 9: Competing risks models Module 10: Open session Email oliverhoo...@psstatistics.com Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatistics.com (Behaviour and cognition) 1.November 5th – 8th 2018 PHYLOGENETIC COMPARATIVE METHODS FOR STUDYING DIVERSIFICATION AND PHENOTYPIC EVOLUTION (PCME01) Glasgow, Scotland, Dr. Antigoni Kaliontzopoulou https://www.prstatistics.com/course/phylogenetic-comparative-methods-for-studying-diversification-and-phenotypic-evolution-pcme01/ 2.November 19th – 23rd 2018 STRUCTUAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (SEMR02) Glasgow, Scotland, Dr. Jonathan Lefcheck https://www.prstatistics.com/course/structural-equation-modelling-for-ecologists-and-evolutionary-biologists-semr02/ 3.November 26th – 30th 2018 FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION (FEER01) Glasgow, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to-ecosystem-theory-and-computation-feer01/ 4.December 3rd – 7th 2018 INTRODUCTION TO BAYESIAN DATA ANALYSIS FOR SOCIAL AND BEHAVIOURAL SCIENCES USING R AND STAN (BDRS01) Glasgow, Dr. Mark Andrews https://www.psstatistics.com/course/introduction-to-bayesian-data-analysis-for-social-and-behavioural-sciences-using-r-and-stan-bdrs01/ 5.January 21st – 25th 2019 STATISTICAL MODELLING OF TIME-TO-EVENT DATA USING SURVIVAL ANALYSIS: AN INTRODUCTION FOR ANIMAL BEHAVIOURISTS, ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (TTED01) Glasgow, Scotland, Dr. Will Hoppitt https://www.psstatistics.com/course/statistical-modelling-of-time-to-event-data-using-survival-analysis-tted01/ 6.January 21st – 25th 2019 ADVANCING IN STATISTICAL MODELLING USING R (ADVR08) Glasgow, Scotland, Dr. Luc Bussiere, Dr. Tom Houslay http://www.prstatistics.com/course/advancing-statistical-modelling-using-r-advr08/ 7.January 28th– February 1st 2019 AQUATIC ACOUSTIC TELEMETRY DATA ANALYSIS AND SURVEY DESIGN Glasgow, Scotland, VEMCO staff and affiliates https://www.prstatistics.com/course/aquatic-acoustic-telemetry-data-analysis-atda01/ 8.February 4th – 8th 2019 DESIGNING RELIABLE AND EFFICIENT EXPERIMENTS FOR SOCIAL SCIENCES (DRES01) Glasgow, Scotland, Dr. Daniel Lakens https://www.psstatistics.com/course/designing-reliable-and-effecient-experiments-for-social-sciences-dres01/ 9.
[ECOLOG-L] Introduction to Bayesian data analysis for social and behavioural sciences using R and Stan
Introduction to Bayesian data analysis for social and behavioural sciences using R and Stan (BDRS01) This course may be suitable to anyone studying animal behaviour. https://www.psstatistics.com/course/introduction-to-bayesian-data-analysis-for-social-and-behavioural-sciences-using-r-and-stan-bdrs01/ This course will be delivered by Dr. Mark Andrews from the 3rd - 7th December 2018 in Glasgow City Centre. Course Overview: This course provides a general introduction to Bayesian data analysis using R and the Bayesian probabilistic programming language Stan. We begin with a gentle introduction to all the fundamental principles and concepts of Bayesian data analysis: the likelihood function, prior distributions, posterior distributions, high posterior density intervals, posterior predictive distributions, marginal likelihoods, Bayes factors, etc. We will do this using some simple probabilistic models that are easy to understand and easy to work with. We then proceed to more practically useful Bayesian analyses, starting with general linear models, followed by generalized linear models, including logistic regression and Poisson regression, followed by multilevel general and generalized linear models. For these analyses, we will use real world data sets, and carry out the analysis with Stan using the brms interface to Stan in R. With each example, we will explore general concepts such as model checking and improvement using posterior predictive checks, and model evaluation using cross-validation, WAIC, and Bayes factors. In the final part of the course, we will delve into some more advanced topics: understanding Markov Chain Monte Carlo in depth, Gaussian process regression, probabilistic mixture models. Course programme Monday 3rd – Classes from 09:30 to 17:30 Class 1: We will begin with a overview of what Bayesian data analysis is in essence and how it fits into statistics as it practiced generally. Our main point here will be that Bayesian data analysis is effectively an alternative school of statistics to the traditional approach, which is referred to variously as the classical, or sampling theory based, or frequentist based approach, rather than being a specialized or advanced statistics topic. However, there is no real necessity to see these two general approaches as being mutually exclusive and in direct competition, and a pragmatic blend of both approaches is entirely possible. Class 2: Introducing Bayes’ rule. Bayes’ rule can be described as a means to calculate the probability of causes from some known effects. As such, it can be used as a means for performing statistical inference. In this section of the course, we will work through some simple and intuitive calculations using Bayes’ rule. Ultimately, all of Bayesian data analysis is based on an application of these methods to more complex statistical models, and so understanding these simple cases of the application of Bayes’ rule can help provide a foundation for the more complex cases. Class 3: Bayesian inference in a simple statistical model. In this section, we will work through a classic statistical inference problem, namely inferring the number of red marbles in an urn of red and black marbles. This problem is easy to analyse completely with just the use of R, but yet allows us to delve into all the key concepts of all Bayesian statistics including the likelihood function, prior distributions, posterior distributions, maximum a posteriori estimation, high posterior density intervals, posterior predictive intervals, marginal likelihoods, Bayes factors, model evaluation of out-of-sample generalization. Tuesday 4th – Classes from 09:30 to 17:30 Class 4: Bayesian analysis of linear and normal models. Statistical models based on linear relationships and normal distribution are a mainstay of statistical analyses in general. They encompass models such as linear regression, Pearson’s correlation, t-tests, ANOVA, ANCOVA, and so on. In this section, we will describe how to do Bayesian analysis of linear and normal models, paying particular attention to Bayesian linear regression. One of the aims of this section is to identify some important and interesting parallels between Bayesian and classical or frequentist analyses. This shows how Bayesian and classical analyses can be seen as ultimately providing two different perspectives on the same problem. Class 5: The previous section provides a so-called analytical approach to linear and normal models. This is where we can calculate desired quantities and distributions by way of simple formulae. However, analytical approaches to Bayesian analyses are only possible in a relatively restricted set of cases. However, numerical methods, specifically Markov Chain Monte Carlo (MCMC) methods can be applied to virtually any Bayesian model. In this section, we will re-perform the analysis presented in the previous section but using MCMC methods. For this,
[ECOLOG-L] Comparative genomics - COURSE
LETE GUIDE TO MIXED MODELS (INCLUDING TEMPORAL AND SPATIAL AUTOCORRELATION) (MMTS01) Crete, GREECE, Dr Aristides (Aris) Moustakas https://www.prstatistics.com/course/a-complete-guide-to-mixed-models-including-temporal-and-spatial-autocorrelation-mmts01/ Oliver Hooker PhD. PR informatics 2018 publications - Alternative routes to piscivory: Contrasting growth trajectories in brown trout (Salmo trutta) ecotypes exhibiting contrasting life history strategies. Ecology of Freshwater Fish. DOI to follow Phenotypic and resource use partitioning amongst sympatric lacustrine brown trout, Salmo trutta. Biological Journal of the Linnean Society. DOI 10.1093/biolinnean/bly032
[ECOLOG-L] Model-based multivariate analysis of abundance data using R - David Warton - AUSTRALIA
(MOVE02) Margam Discovery Centre, Wales, Dr. Luca Borger, Prof. Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move02/ 11. March 4th – 8th 2019 BIOACOUSTICS FOR ECOLOGISTS: HARDWARE, SURVEY DESIGN AND DATA ANALYSIS (BIAC01) Glasgow, Scotland, Dr. Paul Howden-Leach https://www.prstatistics.com/course/bioacoustics-for-ecologists-hardware-survey-design-and-data-analysis-biac01/ 12. March 11th – 15th 2019 ECOLOGICAL NICHE MODELLING USING R (ENMR03) Glasgow, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r-enmr03/ 13. March 18th – 22nd 2019 INTRODUCTION TO STATISTICS AND R FOR EVERYONE (IRFE01) Crete, GREECE, Dr Aristides (Aris) Moustakas https://www.prstatistics.com/course/introduction-to-statistics-and-r-for-anyone-irfe01/ 14. March 25th – 29th 2019 LANDSCAPE GENETIC DATA ANALYSIS USING R (LNDG03) Glasgow, Scotland, Prof. Rodney Dyer http://www.prstatistics.com/course/landscape-genetic-data-analysis-using-r-lndg03/ 15. April 1st – 5th 2019 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R (IPSY01) Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre http://www.psstatistics.com/course/introduction-to-statistics-using-r-for-psychologists-ipsy02/ 16. April 1st – 5th 2019 INDIVIDUAL BASED MODELS FOR ECOLOGSITS (IBME01) Glasgow, Scotland, Dr Aristides (Aris) Moustakas Link to follow 17. April 8th – 12th 2019 MACHINE LEARNING (MLUR01) Glasgow, Scotland, Dr Aristides (Aris) Moustakas https://www.prstatistics.com/course/machine-learning-using-r-mlur01/ 18. April 29th – May 3rd 2019 COMPARATIVE GENOMICS (CMGN01) Glasgow, Scotland, Dr. Fritz Sedlazeck, Dr. Matthias Weissensteiner https://www.prinformatics.com/course/comparative-genomics-cmgn01/ 19. May 6th – 10th 2019 NETWORK ANAYLSIS FOR ECOLOGISTS USING R (NTWA03) Myuna Bay, AUSTRALIA, Dr. Marco Scotti www.prstatistics.com/course/network-analysis-ecologists-ntwa03/ 20. May 16th – 18th 2019 (please note this a 3-day course from Thursday to Saturday) AQUATIC MOVEMENT ECOLOGY USING R (AMER01) Myuna Bay, AUSTRALIA, Dr. Ross Dwyer, Dr. Vinay Udyawer Link to follow 21. May 16th – 19th 2019 (please note this a 4-day course from Thursday to Monday) INTRODUCTION TO R FOR EVERYONE (IRFE02) Myuna Bay, AUSTRALIA, Dr Aristides (Aris) Moustakas https://www.prstatistics.com/course/introduction-to-statistics-and-r-for-anyone-irfe02/ 22. May 20th – 24th 2019 MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R (MBMV03) Myuna Bay, AUSTRALIA, Prof. David Warton https://www.prstatistics.com/course/model-based-multivariate-analysis-of-abundance-data-using-r-mbmv03/ 23. May 21st – 24th 2019 STATISTICAL TOOL BOX FOR ECOLOGISTS (TKFE01) Myuna Bay, AUSTRALIA, Dr Aristides (Aris) Moustakas https://www.prstatistics.com/course/statistical-toolkit-for-ecologists-tkfe01/ 24. June 10th – 14th 2019 STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR (SIMM04) Glasgow, Scotland, Dr. Andrew Parnell, Dr. Andrew Jackson www.prstatistics.com/course/stable-isotope-mixing-models-using-r-simm04/ 25. June 17th – 21st 2019 INTRODUCTION TO PYTHON FOR BIOLOGISTS (IPYB06) Glasgow, Scotland, Dr. Martin Jones http://www.prinformatics.com/course/introduction-to-python-for-biologists-ipyb06/ 26. June 24th – 28th 2019 ADVANCED PYTHON FOR BIOLOGISTS (APYB03) Glasgow, Scotland, Dr. Martin Jones www.prinformatics.com/course/advanced-python-biologists-apyb03/ 27. July 1st – 5th 2019 DATA VISUALISATION AND MANIPULATION USING PYTHON (DVMP01) Glasgow, Scotland, Dr. Martin Jones http://www.prinformatics.com/course/data-visualisation-and-manipulation-using-python-dvmp01/ 28. September 30th – October 4th 2019 GEOMETRIC MORPHOMETRICS USING R (GMMR02) Glasgow, Scotland, Prof. Dean Adams, Prof. Michael Collyer, Dr. Antigoni Kaliontzopoulou http://www.prstatistics.com/course/geometric-morphometrics-using-r-gmmr02/ 29. October 7th – 11th 2019 CONSERVATION PLANNING USING PRIORITIZR : FROM THEORY TO PRACTICE (PRTZ01) Crete, GREECE, Dr Richard Schuster and Nina Morell https://www.prstatistics.com/course/conservation-planning-using-prioritizr-from-theory-to-practice-prtz01/ 30. October 21st – 25th 2019 A COMPLETE GUIDE TO MIXED MODELS (INCLUDING TEMPORAL AND SPATIAL AUTOCORRELATION) (MMTS01) Crete, GREECE, Dr Aristides (Aris) Moustakas https://www.prstatistics.com/course/a-complete-guide-to-mixed-models-including-temporal-and-spatial-autocorrelation-mmts01/ Oliver Hooker PhD. PR informatics 2018 publications - Alternative routes to piscivory: Contrasting growth trajectories in brown trout (Salmo trutta) ecotypes exhibiting contrasting life history strategies. Ecology of Freshwater Fish. DOI to follow Phenotypic and resource use partitioning amongst sympatric lacustrine brown trout, Salmo trutta. Biological Journal of the Linnean Society. DOI 10.1093/biolinnean/bly032
[ECOLOG-L] NEW COURSE ON BIOACOUSTICS - from theory to data analysis
Bioacoustics for ecologists: Hardware, Survey design and Data analysis (BIAC01) https://www.prstatistics.com/course/bioacoustics-for-ecologists-hardware-survey-design-and-data-analysis-biac01/ This brand new course will be delivered by Dr Carlos Abrahams who specialises in the analysis of bioacoustic data and Paul Howden-Leach who is a bioacoustics consultant involved with the practical side of survey design and data collection. It will be held in Glasgow city centre form the 4th - 8th March 2019. Course Overview: This course will introduce and explain the different applications for bioacoustics to answer ecological questions. Starting with a detailed overview of the correct and most efficient methods of data collecting in the field, this course will then go on to show delegates cutting edge methods for analysing and interpreting different types of bioacoustic data. By the end of this 5-day practical course, attendees will have the capacity to set up and deploy recording devices, download acoustic data, how to analyse this data and report the results. Bioacoustic methods are becoming increasingly recognised as a valuable approach for ecological surveying. Bioacoustics can be used to effectively replace some current techniques whilst increasing the quality of the data collected or can be used in unison to compliment them. They are particularly useful for developing long-term, permanent datasets that can be independently reviewed, particularly for rare species with low detectability, or when working in difficult environments. The course will provide a practical introduction to bioacoustics methods, with a mix of lectures and practical workshops, and some optional fieldwork. It will start with a basic introduction to sound and recording theory, before developing hands-on skills in setting-up and deploying a range of acoustic and ultrasonic audio recorders. Workshops will then cover the download and analysis of audio data, mainly using Kaleidoscope Pro and Audacity software. The processed audio data will then be analysed and presented using R, the free software environment for statistical computing and graphics (http://www.r-project.org/). Example data sets will mostly cover applications for bat and bird surveys, as well as the use of Acoustic Indices as biodiversity metrics. If you are working in different areas of ecology using bioacoustics please feel free to contact oliverhoo...@prstatistics.com so we can advise if the learning outcomes are transferable to your field of research. Course programme Day 1 INTRO AND SOUND PROPERTIES Introduction to the course: People on the course Course coverage Resources and references Introduction to bioacoustics: What is sound? Emission and propagation Biological, geological and climate sounds What are ecoacoustics, bioacoustics and soundscape ecology? Acoustic niche hypothesis Uses for bioacoustics: Studying species and populations Studying animal behaviour Studying acoustic communities Day 2 FIELDWORK DATA COLLECTION AND STORAGE Hardware and its use in acoustic surveys and monitoring: Detectors and microphones – choosing and using equipment Statics vs handheld recording Acoustic vs. ultrasound Field sensor setup – practical considerations Testing, calibration and maintenance Recording programmes Survey design Storing and managing audio data and meta data Existing guidance – WWF, BCT, etc Sound reception: microphones, hydrophones, and frequency sensitivity Digital sound recording Limitations and emerging opportunities in hardware and sensor deployment Practical workshops – setup and deployment Day 3 ACOUSTIC ANALYSIS Signal processing and frequency analysis Analysis tools for acoustic data Conducting further statistical analyses Limitations and emerging opportunities in acoustic data analysis Practical workshops – using Kaleidoscope for bats and birds Day 4 DATA INTERPRETATION Integrating with stats (R) /QGIS Practical workshops – using R/QGIS for interpretation of Kaleidoscope results Day 5 Roundup/conclusions Discussion of delegate own projects/data During the course there will be optional evening/morning field trips arranged to carry out acoustic recording Email oliverhoo...@prstatistics.com Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatistics.com (Behaviour and cognition) 1. November 5th – 8th 2018 PHYLOGENETIC COMPARATIVE METHODS FOR STUDYING DIVERSIFICATION AND PHENOTYPIC EVOLUTION (PCME01) Glasgow, Scotland, Dr. Antigoni Kaliontzopoulou https://www.prstatistics.com/course/phylogenetic-comparative-methods-for-studying-diversification-and-phenotypic-evolution-pcme01/ 2. November 19th – 23rd 2018 STRUCTUAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (SEMR02) Glasgow, Scotland, Dr. Jonathan Lefcheck
[ECOLOG-L] AUSTRLIA - Network analysis for ecologists using R
Network analysis for ecologists using R (NTWA03) https://www.prstatistics.com/course/network-analysis-for-ecologists-using-r-ntwa03/ This course will be delivered by Dr Marco Scotti at Myuna Bay Sport and Recreation, Wangi Road, Myuna Bay, New South Wales 2264 Australia, from the 6th - 10th May 2019. Course overview: The first graphical representation of a food web dates back to 1880, with the pioneering works of Lorenzo Camerano. Since then, research on ecological networks has further developed and ecology is one of the fields that contributed the most to the growth of network science. Nowadays, ecologists routinely apply network analysis with a diverse set of objectives that range from studying the stability of ecological communities to quantifying energy flows in ecosystems. The course is intended to provide the participants theoretical knowledge and practical skills for the study of food webs. First, lessons and exercises will introduce basic principles of network theory. Second, ecological examples will be focused on binary food webs, networks depicting who eats whom in ecosystems. Algorithms quantifying either global food web properties or single species features within the trophic network will be introduced. Third, we will study how the architecture of the food webs can be used to investigate robustness to biodiversity loss, thus helping to predict cascading extinction events. Fourth, ecosystem network analysis (ENA), a suite of matrix manipulation routines for the study of energy/matter circulation in ecosystems, will be presented. Then, we will apply the qualitative algorithm of loop analysis to describe how the impacts of perturbations (e.g. overfishing, species invasion and global warming) may propagate through food web structure. Finally, we will learn how to visualize food web graphs to illustrate their features in an intuitive and fancy way. Course programme Day 1 Module 1: Introduction to graph theory and network science. Basic terminology for learning the language of networks: from nodes and links to degree distribution. Three types of mathematical graphs and their properties: random networks, small-world networks, and scale-free networks. Day 2 Module 2: The use of graph theory in ecology: (1) networks representing various interactions in ecological communities (e.g., predator-prey and plant-pollinator networks); (2) networks illustrating interactions at different hierarchical levels (e.g., social networks at the population level and species dispersal in the landscape graph). Who eats whom in ecosystems and at which rate? Binary and weighted food web networks. Quantitative descriptors of food web networks (e.g., fraction of basal, intermediate and top species, connectance and link density). Day 3 Module 3: The structural properties of food web networks. Biodiversity loss and food web network robustness. How to predict secondary extinctions using the information embedded in the network structure of the food webs. The relevance of bipartite networks in ecology for the description of various interaction types (e.g., plant-pollinator and plant-seed disperser relationships). Day 4 Module 4: Ecosystem network analysis (ENA): basic principles and algorithms. Trophic considerations: the effective trophic position of species in acyclic food webs. Finn cycling index and the amount of cycling in ecosystems. Loop analysis: basic principles and its use for modelling signed digraphs. Application of the qualitative algorithm of loop analysis to predict how food web interactions can mediate ecosystem responses to perturbations. Day 5 Module 5: Can network analysis help to better understand possible consequences of global warming on ecological communities? Network visualization with R: how to change the layout of graphs illustrating food web interactions and bipartite networks. Email oliverhoo...@prstatistics.com Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatistics.com (Behaviour and cognition) 1. November 5th – 8th 2018 PHYLOGENETIC COMPARATIVE METHODS FOR STUDYING DIVERSIFICATION AND PHENOTYPIC EVOLUTION (PCME01) Glasgow, Scotland, Dr. Antigoni Kaliontzopoulou https://www.prstatistics.com/course/phylogenetic-comparative-methods-for-studying-diversification-and-phenotypic-evolution-pcme01/ 2. November 19th – 23rd 2018 STRUCTUAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (SEMR02) Glasgow, Scotland, Dr. Jonathan Lefcheck https://www.prstatistics.com/course/structural-equation-modelling-for-ecologists-and-evolutionary-biologists-semr02/ 3. November 26th – 30th 2018 FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION (FEER01) Glasgow, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona
[ECOLOG-L] Ecological niche modelling using R (ENMR03)
Ecological niche modelling using R (ENMR03) https://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr03/ This course will be delivered by Dr. Neftalí Sillero from the 11th - 15th March 2019 in Glasgow City Centre. Please share! Course Overview: The course will cover the base theory of ecological niche modelling and its main methodologies. By the end of this 5-day practical course, attendees will have the capacity to perform ecological niche models and understand their results, as well as to choose and apply the correct methodology depending on the aim of their type of study and data. Ecological niche, species distribution, habitat distribution, or climatic envelope models are different names for similar mechanistic or correlative models, empirical or mathematical approaches to the ecological niche of a species, where different types of ecogeographical variables (environmental, topographical, human) are related with a species physiological data or geographical locations, in order to identify the factors limiting and defining the species’ niche. ENMs have become popular due to the need for efficiency in the design and implementation of conservation management. The course will be mainly practical, with some theoretical lectures. All modelling processes and calculations will be performed with R, the free software environment for statistical computing and graphics (http://www.r-project.org/). Attendees will learn to use modelling algorithms like Maxent, Bioclim, Domain, and logistic regressions, and R packages for computing ENMs like Dismo and Biomod2. Also, students will learn to compare different ecological niche models using the Ecospat package. Course programme Monday 17th – Classes from 09:30 to 17:30 Elementary concepts on Ecological Niche Modelling Module 1: Introduction to ENM theory. Definition of ecological niche model; introduction to species ecological niche theory, types of ecological niches, types of ENM, diagram BAM, ENMs as approximations to species’ niches. Module 2: Problems and limitations on ENM. Assumptions and uncertainties, equilibrium concept, niche conservatism, autocorrelation and intensity, sample size, correlation of environmental variables, size and form of study area, thresholds, model validation, model projections. Module 3: Methods on ENM. Mechanistic and correlative models. Overlap Analysis, Biomod, Domain, Habitat, Distance of Mahalanobis, ENFA, GARP, Maxent, Logistic regression, Generalised Linear Models, Generalised Additive Models, Generalised Boosted Regression Models, Random Forest, Support Vector Machines, Artificial Neural Network. Module 4: Conceptual and practice steps to calculate ENM. How to make an ENM step-by-step. Module 5: Applications of ENM. Ecological niche identification, Identification of contact zones, Integration with genetical data, Species expansions, Species invasions, Dispersion hypotheses, Species conservation status, Prediction of future conservation problems, Projection to future and past climate change scenarios, Modelling past species, Modelling species richness, Road-kills, Diseases, Windmills, Location of protected areas. Tuesday 18th – Classes from 09:30 to 17:30 Prepare environmental variables and run ecological niche models with dismo package. Module 6: Preparing variables. Choosing environmental data sources, Downloading variables, Clipping variables, Aggregating variables, Checking pixel size, Checking raster limits, Checking NoData, Correlating variables. Module 7: Dismo practice. How to run an ENM using the R package dismo. Wednesday 19th – Classes from 09:30 to 17:30 Run ecological niche models with Biomod2 package and Maxent. Module 8: Biomod2 practice. How to run an ENM using the R package Biomod2. Module 9: Maxent practice. How to run an ENM using the R packages dismo and Biomod2 as well as Maxent software. Thursday 20th – Classes from 09:30 to 17:30 Compare ecological niche models with ecospat. Module 10: Ecospat practice. Compare statistically two different ecological niche models using the R package Ecospat. Module 11: Students’ talks. Attendees will have the opportunity to present their own data and analyse which is the best way to successfully obtain an ENM. Friday 21st – Classes from 09:30 to 16:00 Run ecological niche models with your own data. Module 12: Final practical. In this practical, the students will run ENM with their own data or with a new dataset, applying all the methods showed during the previous days. Email oliverhoo...@prstatistics.com Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatistics.com (Behaviour and cognition) 1.October 15th – 19th 2018 APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS (ABME04) Glasgow, Scotland, Dr. Matt Denwood, Emma Howard http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists-
[ECOLOG-L] Crete - Introduction to statistics and R for everyone (IRFE01)
Introduction to statistics and R for everyone (IRFE01) https://www.prstatistics.com/course/introduction-to-statistics-and-r-for- anyone-irfe01/ This course will be delivered by Dr Aristides (Aris) Moustakas from the 18th - 22nd March 2019 in Crete. Please share! Course Overview: This course will provide attendees with the opportunity to learn how (a) to understand and read modern statistics reported in scientific studies, (b) use basic modern statistics for analysing their own data, using the open access R statistical software. The course will focus more on data deriving from life sciences namely medicine, biology, and ecology. The course will initially revise basic statistical knowledge of what is a sample and a distribution, and what is hypothesis testing. Sequentially, attendees will be introduced to the R statistical software. Then the course will proceed with the use of generalised linear models and their equivalency with t-tests, ANOVA, MANOVA and ANCOVA for analysing normally as well as non- normally distributed data and ultimately quantify results, errors, and uncertainty. Attendees will also learn how to produce quality graphs and figures. Intended Audience This workshop is ideal for scientists any scientists seeking an introduction to statistical inference and data analysis coming from diverse scientific disciplines such as medicine, biology, and ecology. No prior knowledge of R is required. However, some prior knowledge of basic statistics is required (e.g. types of distribution, what is a dependent and independent variable (explanatory variables, e.g. body weight). Course programme Monday 18th – Classes from 09:00 to 17:00 Lecture 1-1) Revision of basic statistics: what is a distribution, sampling, data types, factors, basic statistical tests 1-2) Introduction to the R environment 1-3) Packages, names, data types 1-4) Read, write, access, manipulate data Practical 1-1) Install R packages 1-2) Load datasets 1-3) Perform basic statistics, t-tests, ANOVA Tuesday 19th – Classes from 09:00 to 17:00 Lecture 2-1) Experimental design, probability distributions, parameter estimation, condence intervals 2-2) Null hypothesis testing 2-3) Multiple comparisons, Generalized ANOVA, MANOVA, MANCOVA and their equivalency (and easiness of doing so) using a Generalized Linear Model Practical 2-1) Simple linear regression 2-2) Fitting generalized linear models in real normally-distributed datasets Wednesday 20th – Classes from 09:00 to 17:00 Lecture 3-1) Generalizing the regression for many dependent variables 3-2) Model selection and multi-model inference 3-3) Plotting effects 3-4) Checking model assumptions and residuals Practical 3-1) A full normally distributed data analysis 3-2) Model fitting 3-3) ANOVA 3-4) Residuals 3-5) Plotting effects reporting results Thursday 21st – Classes from 09:00 to 17:00 Lecture 4-1) Time-to-event (survival analysis) 4-2) Logistic regression 4-3) Mixed effects models – fixed effects and random effects Practical 4-1) Survival analysis and plotting results 4-2) Fitting mixed effects models, understanding the difference between random and fixed effects 4-3) Plotting all effects Friday 22nd – Classes from 09:00 to 16:00 Lecture 5-1) Dealing with non-normally distributed data 5-2) Identifying the distribution of the data 5-3) Generalizing the linear model for non-normally distributed data 5-4) Data visualisation – Plotting publication quality figures Practical 5-1) Identifying the distribution of the data through AIC model selection 5-2) Fitting the best model residual error structure in a generalised linear model 5-3) Understanding, plotting, interpreting (reporting) and discussing results Email oliverhoo...@prstatistics.com Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatistics.com (Behaviour and cognition) 1. October 15th – 19th 2018 APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS (ABME04) Glasgow, Scotland, Dr. Matt Denwood, Emma Howard http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists- epidemiologists-abme04/ 2. October 23rd – 25th 2018 INTRODUCTIUON TO R (This is a private ‘in-house’ course) London, England, Dr William Hoppitt 3. October 29th – November 2nd 2018 INTRODCUTION TO R AND STATISTICS FOR BIOLOGISTS (IRFB02) Glasgow, Scotland, Dr. Olivier Gauthier https://www.prstatistics.com/course/introduction-to-statistics-and-r-for- biologists-irfb02/ 4. October 29th – November 2nd 2018 INTRODUCTION TO BIOINFORMATICS FOR DNA AND RNA SEQUENCE ANALYSIS (IBDR01) Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith www.prinformatics.com/course/precision-medicine-bioinformatics-from-raw- genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 5. November 5th – 8th 2018 PHYLOGENETIC COMPARATIVE METHODS FOR STUDYING DIVERSIFICATION AND PHENOTYPIC EVOLUTION (PCME01)
[ECOLOG-L] Structural Equation Modelling for Ecologists and Evolutionary Biologists
6/ 31. June 24th – 28th 2019 ADVANCED PYTHON FOR BIOLOGISTS (APYB03) Glasgow, Scotland, Dr. Martin Jones www.prinformatics.com/course/advanced-python-biologists-apyb03/ 32. July 1st – 5th 2019 DATA VISUALISATION AND MANIPULATION USING PYTHON (DVMP01) Glasgow, Scotland, Dr. Martin Jones http://www.prinformatics.com/course/data-visualisation-and-manipulation- using-python-dvmp01/ 33. October 7th – 11th 2019 CONSERVATION PLANNING USING PRIORITIZR : FROM THEORY TO PRACTICE (PRTZ01) Crete, Greece, Dr Richard Schuster and Nina Morell https://www.prstatistics.com/course/conservation-planning-using-prioritizr- from-theory-to-practice-prtz01/ 34. October 21st – 25th 2019 A COMPLETE GUIDE TO MIXED MODELS (INCLUDING TEMPORAL AND SPATIAL AUTOCORRELATION) (MMTS01) Crete, Greece, Dr Aristides (Aris) Moustakas https://www.prstatistics.com/course/a-complete-guide-to-mixed-models- including-temporal-and-spatial-autocorrelation-mmts01/ Oliver Hooker PhD. PR statistics 2018 publications - Alternative routes to piscivory: Contrasting growth trajectories in brown trout (Salmo trutta) ecotypes exhibiting contrasting life history strategies. Ecology of Freshwater Fish. DOI to follow Phenotypic and resource use partitioning amongst sympatric lacustrine brown trout, Salmo trutta. Biological Journal of the Linnean Society. DOI 10.1093/biolinnean/bly032 prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/
[ECOLOG-L] Phylogenetic comparative methods for studying diversification and phenotypic evolution
/course/conservation-planning-using-prioritizr- from-theory-to-practice-prtz01/ 34. October 21st – 25th 2019 A COMPLETE GUIDE TO MIXED MODELS (INCLUDING TEMPORAL AND SPATIAL AUTOCORRELATION) (MMTS01) Crete, Greece, Dr Aristides (Aris) Moustakas https://www.prstatistics.com/course/a-complete-guide-to-mixed-models- including-temporal-and-spatial-autocorrelation-mmts01/ Oliver Hooker PhD. PR statistics 2018 publications - Alternative routes to piscivory: Contrasting growth trajectories in brown trout (Salmo trutta) ecotypes exhibiting contrasting life history strategies. Ecology of Freshwater Fish. DOI to follow Phenotypic and resource use partitioning amongst sympatric lacustrine brown trout, Salmo trutta. Biological Journal of the Linnean Society. DOI 10.1093/biolinnean/bly032 prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/
[ECOLOG-L] Aquatic Acoustic Telemetry Data Analysis
/reproducible-data-science-for- population-genetics-rdpg02/ 15.25th February – 1st March 2019 MOVEMENT ECOLOGY (MOVE02) Margam Discovery Centre, Wales, Dr. Luca Borger, Prof. Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move02/ 16.March 4th – 8th 2019 BIOACUSTIC DATA ANALYSIS Glasgow, Scotland, Dr. Paul Howden-Leach https://www.prstatistics.com/course/bioacoustics-for-ecologists-hardware- survey-design-and-data-analysis-biac01/ 17.March 11th – 15th 2019 ECOLOGICAL NICHE MODELLING USING R (ENMR03) Glasgow, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr03/ 18.March 18th – 22nd 2019 INTRODUCTION TO STATISTICS AND R FOR EVERYONE (IRFE01) Crete, Greece, Dr Aristides (Aris) Moustakas https://www.prstatistics.com/course/introduction-to-statistics-and-r-for- anyone-irfe01/ 19.March 25th – 29th 2019 LANDSCAPE GENETIC DATA ANALYSIS USING R (LNDG03) Glasgow, Scotland, Prof. Rodney Dyer http://www.prstatistics.com/course/landscape-genetic-data-analysis-using-r- lndg03/ 20.April 1st – 5th 2019 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R (IPSY01) Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre http://www.psstatistics.com/course/introduction-to-statistics-using-r-for- psychologists-ipsy02/ 21.April 1st – 5th 2019 INDIVIDUAL BASED MODELS FOR ECOLOGSITS (IBME01) Glasgow Scotland, Dr Aristides (Aris) Moustakas Link to follow 22.April 8th – 12th 2019 MACHINE LEARNING Glasgow Scotland, Dr Aristides (Aris) Moustakas https://www.prstatistics.com/course/machine-learning-using-r-mlur01/ 23.April 8th – 12th 2019 Spatial modelling, analysis and statistical inference of genomic data (SMAG01) Crete, Greece, Dr Matt Fitzpatrick https://www.prstatistics.com/course/spatial-modelling-analysis-and- statistical-inference-of-genomic-data-smag01/ 24.May 6th – 10th 2019 MARK RECAPTURE METHODS AND DATA ANALYSIS FOR ECOLOGISTS (MRKR01) Myuna Bay, Australia, TBC 25.May 16th – 18th 2019 (please note this a 3-day course from Thursday to Saturday) Aquatic movement ecology using R (AMER01) Myuna Bay, Australia, TBC 26.May 16th – 19th 2019 (please note this a 4-day course from Thursday to Monday) Introduction to R for everyone (IRFE02) Myuna Bay, Australia, Dr Aristides (Aris) Moustakas 27.May 20th – 24th 2019 MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R (MBMV03) Myuna Bay, Australia, Prof. David Warton https://www.prstatistics.com/course/model-based-multivariate-analysis-of- abundance-data-using-r-mbmv03/ 28.May 21st – 24th 2019 A statistical tool box for ecologists (STBE01) Myuna Bay, Australia, Dr Aristides (Aris) Moustakas 29.June 10th – 14th 2019 STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR (SIMM04) Glasgow, Scotland, Dr. Andrew Parnell, Dr. Andrew Jackson www.prstatistics.com/course/stable-isotope-mixing-models-using-r-simm04/ 30.June 17th – 21st 2019 INTRODUCTION TO PYTHON FOR BIOLOGISTS (IPYB06) Glasgow, Scotland, Dr. Martin Jones http://www.prinformatics.com/course/introduction-to-python-for-biologists- ipyb06/ 31.June 24th – 28th 2019 ADVANCED PYTHON FOR BIOLOGISTS (APYB03) Glasgow, Scotland, Dr. Martin Jones www.prinformatics.com/course/advanced-python-biologists-apyb03/ 32.July 1st – 5th 2019 DATA VISUALISATION AND MANIPULATION USING PYTHON (DVMP01) Glasgow, Scotland, Dr. Martin Jones http://www.prinformatics.com/course/data-visualisation-and-manipulation- using-python-dvmp01/ 33.October 7th – 11th 2019 CONSERVATION PLANNING USING PRIORITIZR : FROM THEORY TO PRACTICE (PRTZ01) Crete, Greece, Dr Richard Schuster and Nina Morell https://www.prstatistics.com/course/conservation-planning-using-prioritizr- from-theory-to-practice-prtz01/ 34.October 21st – 25th 2019 A COMPLETE GUIDE TO MIXED MODELS (INCLUDING TEMPORAL AND SPATIAL AUTOCORRELATION) (MMTS01) Crete, Greece, Dr Aristides (Aris) Moustakas https://www.prstatistics.com/course/a-complete-guide-to-mixed-models- including-temporal-and-spatial-autocorrelation-mmts01/ Oliver Hooker PhD. PR statistics 2018 publications - Alternative routes to piscivory: Contrasting growth trajectories in brown trout (Salmo trutta) ecotypes exhibiting contrasting life history strategies. Ecology of Freshwater Fish. DOI to follow Phenotypic and resource use partitioning amongst sympatric lacustrine brown trout, Salmo trutta. Biological Journal of the Linnean Society. DOI 10.1093/biolinnean/bly032 prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/
[ECOLOG-L] ecologists using R (ADVR08)
ecologists using R (ADVR08) https://www.prstatistics.com/course/advancing-statistical-modelling-using-r- advr08/ This course will de delivered by Dr. Luc Bussiere from the 21st - 25th - January 2019 in Glasgow City centre. Course Overview: This course will provide an introduction to working with real-life data typical of those encountered in the field of evolutionary biology and ecology. The course will be delivered by Dr. Luc Bussiere, Dr. Tom Houslay and Dr. Ane Timenes Laugen who are all practicing academics in the field of evolutionary biology. This five day course will consist of series of modules (each lasting roughly half a day) covering model selection and simplification, generalised linear models, mixed effects models, and non- linear models. Along the way you will gain in depth experience in data ‘wrangling’, data and model visualisation and plotting, as well as exploring and understanding model diagnostics. Classes will comprises of a mixture of lectures and practicals designed to either build required skills for future modules or to perform a family of analyses that is frequently encountered in the biological literature. Course Programme Monday 21st – Classes from 09:30 to 17:30 Course introduction; techniques for data manipulation, aggregation, and visualisation; introduction to linear regression. Packages: {tidyr}, {dplyr}, {ggplot2} Tuesday 22nd – Classes from 09:30 to 17:30 Linear models (diagnostics, collinearity, scaling, plotting fitted values); fitting and interpreting interaction terms; model selection and simplication; general linear models and ANCOVA. Packages: {stats}, {car} Wednesday 23rd – Classes from 09:30 to 17:30 Generalized linear models (logistic and Poisson regression); predicting using model objects and visualizing model fits. Packages: {broom}, {visreg}, {ggplot2} Thursday 24th – Classes from 09:30 to 17:30 Mixed effects models in theory and practice; visualising fixed and random effects. Packages: {lme4}, {broom}, {ggplot2}, {sjPlot} Friday 85th – Classes from 09:30 to 16:00 Fitting nonlinear functions (polynomial & mechanistic models); brief introduction to more advanced topics & combining methods (e.g., generalised linear mixed effects, nonlinear mixed effects, and zero-inflated and zero- altered models). Packages: {nlsTools} Email oliverhoo...@prstatistics.com Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatistics.com (Behaviour and cognition) 1. October 8th – 12th 2018 INTRODUCTION TO FREQUENTIST AND BAYESIAN MIXED (HIERARCHICAL) MODELS (IFBM01) Glasgow, Scotland, Dr Andrew Parnell https://www.psstatistics.com/course/introduction-to-frequentis-and-bayesian- mixed-models-ifbm01/ 2. October 15th – 19th 2018 APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS (ABME04) Glasgow, Scotland, Dr. Matt Denwood, Emma Howard http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists- epidemiologists-abme04/ 3. October 23rd – 25th 2018 INTRODUCTIUON TO R (This is a private ‘in-house’ course) London, England, Dr William Hoppitt 4. October 29th – November 2nd 2018 INTRODCUTION TO R AND STATISTICS FOR BIOLOGISTS (IRFB02) Glasgow, Scotland, Dr. Olivier Gauthier https://www.prstatistics.com/course/introduction-to-statistics-and-r-for- biologists-irfb02/ 5. October 29th – November 2nd 2018 INTRODUCTION TO BIOINFORMATICS FOR DNA AND RNA SEQUENCE ANALYSIS (IBDR01) Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith www.prinformatics.com/course/precision-medicine-bioinformatics-from-raw- genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 6. November 5th – 8th 2018 PHYLOGENETIC COMPARATIVE METHODS FOR STUDYING DIVERSIFICATION AND PHENOTYPIC EVOLUTION (PCME01) Glasgow, Scotland, Dr. Antigoni Kaliontzopoulou https://www.prstatistics.com/course/phylogenetic-comparative-methods-for- studying-diversification-and-phenotypic-evolution-pcme01/ 7. November 19th – 23rd 2018 STRUCTUAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (SEMR02) Glasgow, Scotland, Dr. Jonathan Lefcheck https://www.prstatistics.com/course/structural-equation-modelling-for- ecologists-and-evolutionary-biologists-semr02/ 8. November 26th – 30th 2018 FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION (FEER01) Glasgow, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 9. December 3rd – 7th 2018 INTRODUCTION TO BAYESIAN DATA ANALYSIS FOR SOCIAL AND BEHAVIOURAL SCIENCES USING R AND STAN (BDRS01) Glasgow, Dr. Mark Andrews https://www.psstatistics.com/course/introduction-to-bayesian-data-analysis- for-social-and-behavioural-sciences-using-r-and-stan-bdrs01/ 10. January 21st – 25th 2019 STATISTICAL MODELLING OF TIME-TO-EVENT
[ECOLOG-L] Landscape genetic data analysis using R (LNDG03)
Landscape genetic data analysis using R (LNDG03) https://www.prstatistics.com/course/landscape-genetic-data-analysis-using-r- lndg03/ This course will de delivered by Prof. Rodney Dyer from the 25th - 29th March 2019 in Glasgow City centre. Course Overview: The term ‘landscape genetics’ has been applied studies that integrate ecological context and intervening landscape into population genetic analyses of contemporary processes such as gene flow and migration. This course will cover the basics of both quantitative landscape ecology and population genetics, focusing on how we develop and evaluate spatial/genetic analyses using the R platform. Monday 25th – Classes from 09:30 to 17:30 Module 1: Spatial & Ecological Data. Installation & configuring R & RStudio Acquiring spatial data, projections, and visualization Vector and raster data Tuesday 26th – Classes from 09:30 to 17:30 Module 2: Genetic markers and basic analyses Genetic markers and sampling Genetic distance, diversity, and structure Ordination techniques based upon genetic markers Wednesday 27th – Classes from 09:30 to 17:30 Module 3: Integrating spatial and genetic data Barrier detection & population division Resistance Modeling Mantel and distance regressions Remote sensing – LiDAR and Hyperspectral data Thursday 28th – Classes from 09:00 to 17:00 Module 4: Integrating spatial and genetic data Spatial autocorrelation Network Approaches PCMN & Redundancy Friday 29th – Classes from 09:30 to 16:00 Module 5: Adaptive Genetic Variance Outliers & gradients Quantitative genetics, why we should care. Chromosome walking Email oliverhoo...@prstatistics.com Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatistics.com (Behaviour and cognition) 1. October 8th – 12th 2018 INTRODUCTION TO FREQUENTIST AND BAYESIAN MIXED (HIERARCHICAL) MODELS (IFBM01) Glasgow, Scotland, Dr Andrew Parnell https://www.psstatistics.com/course/introduction-to-frequentis-and-bayesian- mixed-models-ifbm01/ 2. October 15th – 19th 2018 APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS (ABME04) Glasgow, Scotland, Dr. Matt Denwood, Emma Howard http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists- epidemiologists-abme04/ 3. October 23rd – 25th 2018 INTRODUCTIUON TO R (This is a private ‘in-house’ course) London, England, Dr William Hoppitt 4. October 29th – November 2nd 2018 INTRODCUTION TO R AND STATISTICS FOR BIOLOGISTS (IRFB02) Glasgow, Scotland, Dr. Olivier Gauthier https://www.prstatistics.com/course/introduction-to-statistics-and-r-for- biologists-irfb02/ 5. October 29th – November 2nd 2018 INTRODUCTION TO BIOINFORMATICS FOR DNA AND RNA SEQUENCE ANALYSIS (IBDR01) Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith www.prinformatics.com/course/precision-medicine-bioinformatics-from-raw- genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 6. November 5th – 8th 2018 PHYLOGENETIC COMPARATIVE METHODS FOR STUDYING DIVERSIFICATION AND PHENOTYPIC EVOLUTION (PCME01) Glasgow, Scotland, Dr. Antigoni Kaliontzopoulou https://www.prstatistics.com/course/phylogenetic-comparative-methods-for- studying-diversification-and-phenotypic-evolution-pcme01/ 7. November 19th – 23rd 2018 STRUCTUAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (SEMR02) Glasgow, Scotland, Dr. Jonathan Lefcheck https://www.prstatistics.com/course/structural-equation-modelling-for- ecologists-and-evolutionary-biologists-semr02/ 8. November 26th – 30th 2018 FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION (FEER01) Glasgow, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 9. December 3rd – 7th 2018 INTRODUCTION TO BAYESIAN DATA ANALYSIS FOR SOCIAL AND BEHAVIOURAL SCIENCES USING R AND STAN (BDRS01) Glasgow, Dr. Mark Andrews https://www.psstatistics.com/course/introduction-to-bayesian-data-analysis- for-social-and-behavioural-sciences-using-r-and-stan-bdrs01/ 10. January 21st – 25th 2019 STATISTICAL MODELLING OF TIME-TO-EVENT DATA USING SURVIVAL ANALYSIS: AN INTRODUCTION FOR ANIMAL BEHAVIOURISTS, ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (TTED01) Glasgow, Scotland, Dr. Will Hoppitt https://www.psstatistics.com/course/statistical-modelling-of-time-to-event- data-using-survival-analysis-tted01/ 11. January 21st – 25th 2019 ADVANCING IN STATISTICAL MODELLING USING R (ADVR08) Glasgow, Scotland, Dr. Luc Bussiere, Dr. Tom Houslay http://www.prstatistics.com/course/advancing-statistical-modelling-using-r- advr08/ 12. January 28th– February 1st 2019 AQUATIC ACOUSTIC TELEMETRY DATA ANALYSIS AND SURVEY DESIGN Glasgow, Scotland, VEMCO staff and affiliates https://www.prstatistics.com/course/aquatic-acoustic-telemetry-data-
[ECOLOG-L] FINAL CALL FOR Applied Bayesian modelling for ecologists
FINAL CALL FOR Applied Bayesian modelling for ecologists and epidemiologists (ABME04) https://www.prstatistics.com/course/applied-bayesian-modelling-for- ecologists-and-epidemiologists-abme04/ This course will be delivered by Prof. Matt Denwood in Glasgow city centre form the 15th - 19th October 2018. Course Overview: This application-driven course will provide a founding in the basic theory & practice of Bayesian statistics, with a focus on MCMC modeling for ecological & epidemiological problems. Starting from a refresher on probability & likelihood, the course will take students all the way to cutting-edge applications such as state-space population modelling & spatial point-process modelling. By the end of the week, you should have a basic understanding of how common MCMC samplers work and how to program them, and have practical experience with the BUGS language for common ecological and epidemiological models. The experience gained will be a sufficient foundation enabling you to understand current papers using Bayesian methods, carry out simple Bayesian analyses on your own data and springboard into more elaborate applications such as dynamical, spatial and hierarchical modelling. Monday 15th – Classes from 09:30 to 17:30 Module 1: Revision of likelihoods using full likelihood profiles and an introduction to the theory of Bayesian statistics. Probability and likelihood. Conditional, joint and total probability, independence, Baye’s law. Probability distributions. Uniform, Bernoulli, Binomial, Poisson, Gamma, Beta and Normal distributions – their range, parameters and common uses of Likelihood and parameter estimation by maximum likelihood. Numerical likelihood profiles and maximum likelihood. Introduction to Bayesian statistics. Relationship between prior, likelihood & posterior distributions. Summarising a posterior distribution; The philosophical differences between frequentist & Bayesian statistics, & the practical implications of these. Applying Bayes’ theorem to discrete & continuous data for common data types given different priors. Building a posterior profile for a given dataset, & compare the effect of different priors for the same data. Tuesday 16th – Classes from 09:30 to 17:30 Module 2: An introduction to the workings of MCMC, and the potential dangers of MCMC inference. Participants will program their own (basic) MCMC sampler to illustrate the concepts and fully understand the strengths and weaknesses of the general approach. The day will end with an introduction to the bugs language. Introduction to MCMC. The curse of dimensionality & the advantages of MCMC sampling to determine a posterior distribution. Monte Carlo integration, standard error, & summarising samples from posterior distributions in R. Writing a Metropolis algorithm & generating a posterior distribution for a simple problem using MCMC. Markov chains, autocorrelation & convergence. Definition of a Markov chain. Autocorrelation, effective sample size and Monte Carlo error. The concept of a stationary distribution and burnin. Requirement for convergence diagnostics, and common statistics for assessing convergence. Adapting an existing Metropolis algorithm to use two chains, & assessing the effect of the sampling distribution on the autocorrelation. Introduction to BUGS running simple models in JAGS. Introduction to the BUGS language & how a BUGS model is translated to an MCMC sampler during compilation. The difference between deterministic & stochastic nodes, & the contribution of priors & the likelihood. Running, extending & interpreting the output of simple JAGS models from within R using the runjags interface. Wednesday 17th – Classes from 09:30 to 17:30 Module 3: Common models for which jags/bugs would be used in practice, with examples given for different types of model code. All aspects of writing, running, assessing and interpreting these models will be extensively discussed so that participants are able and confident to run similar models on their own. There will be a particularly heavy focus on practical sessions during this day. The day will finish with a discussion of how to assess the fit of mcmc models using the deviance information criterion (dic) and other methods. Using JAGS for common problems in biology. Understanding and generating code for basic generalised linear mixed models in JAGS. Syntax for quadratic terms and interaction terms in JAGS. Essential fitting tips and model selection. The need for minimal cross- correlation and independence between parameters and how to design a model with these properties. The practical methods and implications of minimizing Monte Carlo error and autocorrelation, including thinning. Interpreting the DIC for nested models, and understanding the limitations of how this is calculated. Other methods of model selection and where these might be more useful than DIC. Most commonly used methods Rationale and use
[ECOLOG-L] FINAL CALL FOR Introduction to bioinformatics for DNA and RNA sequence analysis
FINAL CALL FOR Introduction to bioinformatics for DNA and RNA sequence analysis (IBDR01) https://www.prinformatics.com/course/introduction-to-bioinformatics-for-dna- and-rna-sequence-analysis-ibdr01/ This course will be delivered by Dr. Malachi Griffith in Glasgow city centre from the 29 October- 2 November 2018 Course Overview: Analysis of high throughput genome and transcriptome data is major component of many research projects ranging from large-scale precision medicine efforts to focused investigations in model systems. This analysis involves the identification of specific genome or transcriptome features that predispose individuals to disease, predict response to therapies, influence diagnosis/prognosis, or provide mechanistic insights into disease models. During this course (IBDR01), students will perform an example end- to-end bioinformatics analysis of genome (WGS and Exome) and transcriptome (RNA-seq) data. Students will start with raw sequence data for a hypothetical case, learn to install and use the tools needed to analyze this data on the cloud, and visualize and interpret results. After completing the course, students should be in a position to (1) understand raw sequence data formats, (2) perform bioinformatics analyses on the cloud, (3) run complete analysis pipelines for alignment, variant calling, annotation, and RNA-seq (transcriptome analysis approaches will be a major component of the workshop), (4) visualize and interpret whole genome, exome and RNA-seq results, (5) leverage the identification of passenger variants for immunotherapy applications, and (6) begin to place these results in a clinical context by use of variant knowledgebases. The data, tools, and analysis will be most directly relevant to human genomics and bioinformatics research. However, many of the skills and concepts covered will be applicable to other human diseases and model organisms. Furthermore, many analysis concepts covered during the workshop will be broadly applicable to other “big data” research problems. All course materials (including copies of presentations, practical exercises, data files, and example scripts prepared by the instructing team) will be provided electronically to participants. Monday 29th – Classes from 09:30 to 17:30 Session 1. Introduction to genomics and bioinformatics. In this session, students will be introduced to key concepts of genomics and their application to genomics research and precision medicine in cancer. An introduction to next-generation sequencing platforms and related bioinformatics approaches will also be provided. Core concepts and tools introduced: fundamentals of genome and transcriptome analysis, next- generation sequencing, precision/personalized medicine approaches (using cancer as an exemplar disease). Session 2. Introduction to genomics data, file formats, QC, and cloud analysis. In this session, students will be introduced to a hypothetical patient case and related samples to be analyzed throughout the course. Students will be provided with an introduction to the whole genome, exome, transcriptome and other data sets we have generated for this test case. Information on where to get the raw data and how to access it (and other test data) will be provided. Using this data as an example, the students will learn fundamentals of next generation sequence (NGS) data formats. The students will also be introduced to accessory files needed for analysis including reference genomes, reference transcriptomes, and annotation files. Tools for QC analysis of raw data will be demonstrated. Since most analysis will be performed on the cloud, each student will learn how to launch and log into their own cloud compute environment. Students will learn how to install bioinformatics tools and learn to use some of the most broadly useful tool kits for NGS data. Core concepts and tools introduced: file formats (Fasta, FastQ, SAM/BAM/CRAM, VCF, GTF), bedtools, Picard, samtools, fastQC, cloud computing (AWS, EC2). Tuesday 30th – Classes from 09:30 to 17:30 Session 3. Primary genome data analysis (sequence alignment and visualization). In this session, we will start to complete analysis of NGS data at the command line. Students will log into the cloud, and starting with their own copy of the raw data will align the whole genome and exome data to a reference genome. Following alignment, students will conduct a second quality analysis of the data and learn to visualize alignments in IGV. Core concepts and tools introduced: alignment algorithms, reference indexes, BWA, BWA-mem, alignment indexes, alignment flags, genome browsers, duplicate marking, alignment merging and sorting, IGV. Session 4. Whole genome and exome variant calling and annotation. In this session, we will introduce different algorithms for identifying sequence variations of various types from either whole genome or exome data (or both). Both germline and
[ECOLOG-L] FINAL CALL FOR Introduction to R for biologists (IRFB02)
FINAL CALL FOR Introduction to R for biologists (IRFB02) https://www.prstatistics.com/course/introduction-to-statistics-and-r-for- biologists-irfb02/ This course will be delivered by Olivier Gauthier in Glasgow city centre from the 29 October - 1 November 2018 Course overview: The course will consist of a series of 8 modules each lasting roughly half a day, and designed to build required skills for subsequent modules and more advanced courses. At its conclusion, participants will have acquired basic skills in coding with R, and will be able to perform and interpret simple analyses, and critically evaluate similar analyses from the scientific literature and technical reports. Monday 29th 1. Data visualisation using ggplot2 2. Packages, names, data types 3. Read, write, access, manipulate data Tuesday 30th 1. Scripts and projects 2. Probability distributions, parameter estimation, condence intervals 3. Null hypothesis testing Wednesday 31st 1. Control statements 2. Writing R Functions 3. Simple linear regression Thursday 1st 1. Multiple linear regression (Estimation of model parameters, Ordinary and standardized regression coefficients, Multicollinearity, Hypothesis testing) 2. Model and variable selection Email oliverhoo...@prstatistics.com Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatistics.com (Behaviour and cognition) 1.October 8th – 12th 2018 INTRODUCTION TO FREQUENTIST AND BAYESIAN MIXED (HIERARCHICAL) MODELS (IFBM01) Glasgow, Scotland, Dr Andrew Parnell https://www.psstatistics.com/course/introduction-to-frequentis-and-bayesian- mixed-models-ifbm01/ 2.October 15th – 19th 2018 APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS (ABME04) Glasgow, Scotland, Dr. Matt Denwood, Emma Howard http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists- epidemiologists-abme04/ 3.October 23rd – 25th 2018 INTRODUCTIUON TO R (This is a private ‘in-house’ course) London, England, Dr William Hoppitt 4.October 29th – November 2nd 2018 INTRODCUTION TO R AND STATISTICS FOR BIOLOGISTS (IRFB02) Glasgow, Scotland, Dr. Olivier Gauthier https://www.prstatistics.com/course/introduction-to-statistics-and-r-for- biologists-irfb02/ 5.October 29th – November 2nd 2018 INTRODUCTION TO BIOINFORMATICS FOR DNA AND RNA SEQUENCE ANALYSIS (IBDR01) Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith www.prinformatics.com/course/precision-medicine-bioinformatics-from-raw- genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 6.November 5th – 8th 2018 PHYLOGENETIC COMPARATIVE METHODS FOR STUDYING DIVERSIFICATION AND PHENOTYPIC EVOLUTION (PCME01) Glasgow, Scotland, Dr. Antigoni Kaliontzopoulou https://www.prstatistics.com/course/phylogenetic-comparative-methods-for- studying-diversification-and-phenotypic-evolution-pcme01/ 7.November 19th – 23rd 2018 STRUCTUAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (SEMR02) Glasgow, Scotland, Dr. Jonathan Lefcheck https://www.prstatistics.com/course/structural-equation-modelling-for- ecologists-and-evolutionary-biologists-semr02/ 8.November 26th – 30th 2018 FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION (FEER01) Glasgow, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 9.December 3rd – 7th 2018 INTRODUCTION TO BAYESIAN DATA ANALYSIS FOR SOCIAL AND BEHAVIOURAL SCIENCES USING R AND STAN (BDRS01) Glasgow, Dr. Mark Andrews https://www.psstatistics.com/course/introduction-to-bayesian-data-analysis- for-social-and-behavioural-sciences-using-r-and-stan-bdrs01/ 10.January 21st – 25th 2019 STATISTICAL MODELLING OF TIME-TO-EVENT DATA USING SURVIVAL ANALYSIS: AN INTRODUCTION FOR ANIMAL BEHAVIOURISTS, ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (TTED01) Glasgow, Scotland, Dr. Will Hoppitt https://www.psstatistics.com/course/statistical-modelling-of-time-to-event- data-using-survival-analysis-tted01/ 11.January 21st – 25th 2019 ADVANCING IN STATISTICAL MODELLING USING R (ADVR08) Glasgow, Scotland, Dr. Luc Bussiere, Dr. Tom Houslay http://www.prstatistics.com/course/advancing-statistical-modelling-using-r- advr08/ 12.January 28th– February 1st 2019 AQUATIC ACOUSTIC TELEMETRY DATA ANALYSIS AND SURVEY DESIGN Glasgow, Scotland, VEMCO staff and affiliates https://www.prstatistics.com/course/aquatic-acoustic-telemetry-data- analysis-atda01/ 13.February 4th – 8th 2019 DESIGNING RELIABLE AND EFFICIENT EXPERIMENTS FOR SOCIAL SCIENCES (DRES01) Glasgow, Scotland, Dr. Daniel Lakens https://www.psstatistics.com/course/designing-reliable-and-effecient- experiments-for-social-sciences-dres01/ 14.February 11th – 15th 2019 REPRODUCIBLE DATA SCIENCE FOR POPULATION GENETICS Glasgow, Scotland, Dr. Thibaut Jombart, Dr. Zhain
[ECOLOG-L] Introduction to R for biologists (IRFB02)
and affiliates https://www.prstatistics.com/course/aquatic-acoustic-telemetry-data- analysis-atda01/ 15. 4th – 8th February 2019 DESIGNING RELIABLE AND EFFICIENT EXPERIMENTS FOR SOCIAL SCIENCES (DRES01) Glasgow, Scotland, Dr. Daniel Lakens https://www.psstatistics.com/course/designing-reliable-and-effecient- experiments-for-social-sciences-dres01/ 16. February 11th – 15th 2019 REPRODUCIBLE DATA SCIEDNCE FOR POPULATION GENETICS Glasgow, Scotland, Dr. Thibaut Jombart, Dr. Zhain Kamvar https://www.prstatistics.com/course/reproducible-data-science-for- population-genetics-rdpg02/ 17. 25th February – 1st March 2019 MOVEMENT ECOLOGY (MOVE02) Margam Discovery Centre, Wales, Dr. Luca Borger, Prof. Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move02/ 18. March 4th – 8th 2019 BIOACUSTIC DATA ANALYSIS Glasgow, Scotland, Dr. Paul Howden-Leach https://www.prstatistics.com/course/bioacoustics-for-ecologists-hardware- survey-design-and-data-analysis-biac01/ 19. March 11th – 15th 2019 ECOLOGICAL NICHE MODELLING USING R (ENMR03) Glasgow, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr03/ 20. MARCH 18th – 22nd 2019 INTRODUCTION TO STATISTICS AND R FOR EVERYONE (IRFE01) Crete, Greece, Dr Aristides (Aris) Moustakas https://www.prstatistics.com/course/introduction-to-statistics-and-r-for- anyone-irfe01/ 21. March 25th – 29th 2019 LANDSCAPE GENETIC/GENOMIC DATA ANALYSIS USING R (LNDG03) Glasgow, Scotland, Prof. Rodney Dyer http://www.prstatistics.com/course/landscape-genetic-data-analysis-using-r- lndg03/ 22. A pril 1st – 5th 2019 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R (IPSY01) Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre http://www.psstatistics.com/course/introduction-to-statistics-using-r-for- psychologists-ipsy02/ 23. April 8th – 12th MACHINE LEARNING Glasgow Scotland, Dr Aristides (Aris) Moustakas https://www.prstatistics.com/course/machine-learning-using-r-mlur01/ -- Oliver Hooker PhD. PR statistics 2018 publications - Alternative routes to piscivory: Contrasting growth trajectories in brown trout (Salmo trutta) ecotypes exhibiting contrasting life history strategies. Ecology of Freshwater Fish. DOI to follow Phenotypic and resource use partitioning amongst sympatric lacustrine brown trout, Salmo trutta. Biological Journal of the Linnean Society. DOI 10.1093/biolinnean/bly032 prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] SCHOLARSHIPS for the course "Introduction to Frequentist and Bayesian mixed (Hierarchical) models
PARTFUNDED SCHOLARSHIPS for the course "Introduction to Frequentist and Bayesian mixed (Hierarchical) models (IFBM01)" This course will run from the 8th - 12th October 2018 in Glasgow City Centre, Scotland, UK www.psstatistics.com/course/introduction-to-frequentis-and-bayesian-mixed- models-ifbm01/ PS STATISTICS ARE PLEASED TO ANNOUNCE THAT THROUGH THEIR FUNDING SCHEME THEY ARE ABLE TO OFFER PART-FUNDED SCHOLARSHIPS FOR THREE UP-COMING COURSES 1)Introduction to Frequentist and Bayesian mixed (Hierarchical) models (IFBM01) As well as… 2)Time series models for ecologists (TSME02) 3)Applied Bayesian modelling for ecologists and epidemiologists (ABME04) SCHOLARSHIPS FOR IFBM01 CONTRIBUTE TOWARDS COURSE AND ACCOMMODATION FEES WITH ALL INCLUSIVE PLACES (accommodation and meals included) AVAILABLE AT £475.00 (Fees have been subsidised by 40% from £775.00). Applications should be sent to oliverhoo...@psstatistics.com and contain the following. 1. Full name 2. Institute name 3. PhD subject title or Post doc research questions 4. Do you hold a funded position 5. 150 words why this course would be relevant to your research or how it would help. Application deadline is Thursday 13th September and decisions will be made by Friday 14th September 2018. We still have ‘normal’ places available for anyone else interested. Full course details are given below Introduction to Frequentist and Bayesian mixed (Hierarchical) models (IFBM01) https://www.psstatistics.com/course/introduction-to-frequentis-and-bayesian- mixed-models-ifbm01/ Course Overview: This course will cover introductory mixed or hierarchical modelling (fixed and random effects models) for real-world data sets from both a Frequentist and Bayesian perspective. These methods lie at the forefront of statistics research and are a vital tool in the scientist’s toolbox. The course focuses on introducing concepts and demonstrating good practice in mixed modelling. All methods are demonstrated with data sets which participants can run themselves. Participants will be taught how to fit hierarchical models using both the standard lme4 mixed effects models library in R, together with the Bayesian modelling framework via rstanarm. The course covers the full gamut from simple regression models through to full generalised multivariate mixed structures. The relevant advantages and disadvantages of both the Frequentist and Bayesian approaches will be presented.. Participants are encouraged to bring their own data sets for discussion with the course tutors. Oliver Hooker PhD. PS statistics 2018 publications - Alternative routes to piscivory: Contrasting growth trajectories in brown trout (Salmo trutta) ecotypes exhibiting contrasting life history strategies. Ecology of Freshwater Fish. DOI to follow Phenotypic and resource use partitioning amongst sympatric lacustrine brown trout, Salmo trutta. Biological Journal of the Linnean Society. DOI 10.1093/biolinnean/bly032 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] Scholarships - Time series models for ecologists stats course
PARTFUNDED SCHOLARSHIPS for the course "Time series models for ecologists (TSME02) deadline 14/09/2018" This course will run from the 1st - 5th October 2018 in Glasgow City Centre, Scotland, UK www.prstatistics.com/course/time-series-models-for-ecologists-tsme02/ PR STATISTICS ARE PLEASED TO ANNOUNCE THAT THROUGH THEIR FUNDING SCHEME THEY ARE ABLE TO OFFER PART-FUNDED SCHOLARSHIPS FOR THREE UP-COMING COURSES 1) Time series models for ecologists (TSME02) As well as… 2) Introduction to Frequentist and Bayesian mixed (Hierarchical) models (IFBM01) 3) Applied Bayesian modelling for ecologists and epidemiologists (ABME04) SCHOLARSHIPS FOR TSME02 CONTRIBUTE TOWARDS COURSE AND ACCOMMODATION FEES WITH ALL INCLUSIVE PLACES (accommodation and meals included) AVAILABLE AT £475.00 (Fees have been subsidised by 40% from £775.00). Applications should be sent to oliverhoo...@prstatisitics.com and contain the following. 1. Full name 2. Institute name 3. PhD subject title or Post doc research questions 4. Do you hold a funded position 5. 150 words why this course would be relevant to your research or how it would help. Application deadline is Thursday 13th September and decisions will be made by Friday 14th September 2018. We still have ‘normal’ places available for anyone else interested. Full course details are given below Time series models for ecologists (TSME02) deadline 14/09/2018 https://www.prstatistics.com/course/time-series-models-for-ecologists- tsme02/ Course Overview: This course will cover time series analysis with a particular focus on applications in ecology. All methods will be illustrated using the free, open-source software package R. The course is designed for attendees that have a basic knowledge of R and elementary statistics but not necessarily time series. Time Series data are ubiquitous in the physical sciences, and models for their behaviour enable scientists to understand temporal dynamics and predict future values. The course will cover a range of techniques from time series decomposition, seasonally adjusting, temporal autocorrelation and correlograms, simple exponential smoothing and ARIMA modelling approaches up to complex Bayesian models. Participants will gain a deeper understanding of the models being fitted, and be able interpret the results appropriately. Participants are encouraged to bring their own data sets for discussion with the course tutor. Oliver Hooker PhD. PR statistics 2018 publications - Alternative routes to piscivory: Contrasting growth trajectories in brown trout (Salmo trutta) ecotypes exhibiting contrasting life history strategies. Ecology of Freshwater Fish. DOI to follow Phenotypic and resource use partitioning amongst sympatric lacustrine brown trout, Salmo trutta. Biological Journal of the Linnean Society. DOI 10.1093/biolinnean/bly032 prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] Phylogenetic comparative methods for studying diversification and phenotypic evolution
Phylogenetic comparative methods for studying diversification and phenotypic evolution (PCME01) https://www.prstatistics.com/course/phylogenetic-comparative-methods-for- studying-diversification-and-phenotypic-evolution-pcme01/ This course will be delivered by Dr. Antigoni Kaliontzopoulou in Glasgow City Centre from 5th - 8th November 2018. Please feel free to share anywhere you see fit. Course Overview: Phylogenetic comparative methods are commonly used nowadays to investigate how species diversification occurs and to test hypotheses about the mechanisms that drive phenotypic evolution, e.g. to model speciation and extinction, to understand why some groups are more diverse than others, to test whether phenotypic traits have evolved under neutral, directional or diversifying selection, to investigate how evolutionary rates are modified across the evolutionary history of a group etc. In all these cases, a phylogenetic hypothesis for the group of interest is combined to phenotypic and ecological data at the species level to understand the tempo and mode of evolutionary change. The objective of this course is to provide an overview of these methods and of the tools available for their implementation in the R statistical language. During theoretical sessions, we will review the main concepts and statistical tools necessary for testing hypotheses about species diversification and phenotypic evolution. These will then be implemented during practical's through worked examples to provide the participants with hands-on experience on data management and the implementation of these methods to real biological data. Intended Audience Research postgraduates, practicing academics and primary investigators in evolutionary ecology with interest for any kind of studies involving evolutionary inferences across phylogenetically related species. Monday 29th 9:00 – 9:30: Introductions 9:30 – 10:30: Why do we need PCMs? A short history of the field 11:00 – 12:00: Testing for phylogenetic signal 13:00 – 14:00: Ancestral character reconstruction 14:30 – 17:30: PRACTICALS Tuesday 30th Testing hypotheses on phenotypic evolution 9:00 – 10:30: Phylogenetic independent contrasts and phylogenetic GLS 11:00 – 12:30: Phylogenetically-informed ordination 14:30 – 17:30: PRACTICALS Wednesday 31st Tempo and mode of evolutionary change 9:00 – 10:30: Evolutionary rates: estimation and tests 11:00 – 12:30: Models of phenotypic evolution 14:30 – 17:30: PRACTICALS Thursday 1st Miscellanea 9:00 – 10:30: Modelling lineage diversification 11:00 – 12:30: Future perspectives: multivariate extensions to PCMs 14:30 – 17:30: PRACTICALS Email oliverhoo...@prstatistics.com Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatsistics.com (Behaviour and cognition) 1. October 1st – 5th TIME SERIES MODELS FOR ECOLOGISTS (TSME02) Glasgow, Dr Andrew Parnell https://www.prstatistics.com/course/time-series-models-foe-ecologists- tsme02/ 2. October 1st – 5th 2018 INTRODUCTION TO LINUX WORKFLOWS FOR BIOLOGISTS (IBUL03) Glasgow, Scotland, Dr. Martin Jones https://www.prinformatics.com/course/introduction-to-linux-workflows-for- biologists-ibul03/ 3. October 8th – 12th 2018 INTRODUCTION TO FREQUENTIST AND BAYESIAN MIXED (HIERARCHICAL) MODELS (IFBM01) Glasgow, Scotland, Dr Andrew Parnell https://www.psstatistics.com/course/introduction-to-frequentis-and-bayesian- mixed-models-ifbm01/ 4. October 15th – 19th 2018 APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS (ABME04) Glasgow, Scotland, Dr. Matt Denwood, Emma Howard http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists- epidemiologists-abme04/ 5. October 23rd – 25th 2018 INTRODUCTIUON TO R (This is a private ‘in-house’ course) London, England, Dr William Hoppitt 6. October 29th – November 2nd 2018 INTRODCUTION TO R AND STATISTICS FOR BIOLOGISTS (IRFB02) Glasgow, Scotland, Dr. Olivier Gauthier https://www.prstatistics.com/course/introduction-to-statistics-and-r-for- biologists-irfb02/ 7. October 29th – November 2nd 2018 INTRODUCTION TO BIOINFORMATICS FOR DNA AND RNA SEQUENCE ANALYSIS (IBDR01) Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith www.prinformatics.com/course/precision-medicine-bioinformatics-from-raw- genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 8. November 5th – 8th 2018 PHYLOGENETIC COMPARATIVE METHODS FOR STUDYING DIVERSIFICATION AND PHENOTYPIC EVOLUTION (PCME01) Glasgow, Scotland, Dr. Antigoni Kaliontzopoulou https://www.prstatistics.com/course/phylogenetic-comparative-methods-for- studying-diversification-and-phenotypic-evolution-pcme01/ 9. November 19th – 23rd 2018 STRUCTUAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (SEMR02) Glasgow, Scotland, Dr. Jonathan Lefcheck https://www.prstatistics.com/course/structural-equation-modelling-for-
[ECOLOG-L] Applied Bayesian modelling for ecologists and epidemiologists
Applied Bayesian modelling for ecologists and epidemiologists (ABME04) This course will be delivered by Matt Denwood in Glasgow City Centre from 15th - 19th October 2018. https://www.prstatistics.com/course/applied-bayesian-modelling-for- ecologists-and-epidemiologists-abme04/ Please feel free to share anywahere you see fit. Course Overview: This application-driven course will provide a founding in the basic theory & practice of Bayesian statistics, with a focus on MCMC modeling for ecological & epidemiological problems. Starting from a refresher on probability & likelihood, the course will take students all the way to cutting-edge applications such as state-space population modelling & spatial point-process modelling. By the end of the week, you should have a basic understanding of how common MCMC samplers work and how to program them, and have practical experience with the BUGS language for common ecological and epidemiological models. The experience gained will be a sufficient foundation enabling you to understand current papers using Bayesian methods, carry out simple Bayesian analyses on your own data and springboard into more elaborate applications such as dynamical, spatial and hierarchical modelling. Intended Audience Research postgraduates, practicing academics and primary investigators in ecology and epidemiology and professionals in government and industry. Monday 15th – Classes from 09:00 to 17:00 Module 1: Revision of likelihoods using full likelihood profiles and an introduction to the theory of Bayesian statistics. Probability and likelihood. Conditional, joint and total probability, independence, Baye’s law. Probability distributions. Uniform, Bernoulli, Binomial, Poisson, Gamma, Beta and Normal distributions – their range, parameters and common uses of Likelihood and parameter estimation by maximum likelihood. Numerical likelihood profiles and maximum likelihood. Introduction to Bayesian statistics. Relationship between prior, likelihood & posterior distributions. Summarising a posterior distribution; The philosophical differences between frequentist & Bayesian statistics, & the practical implications of these. Applying Bayes’ theorem to discrete & continuous data for common data types given different priors. Building a posterior profile for a given dataset, & compare the effect of different priors for the same data. Tuesday 16th – Classes from 09:00 to 17:00 Module 2: An introduction to the workings of MCMC, and the potential dangers of MCMC inference. Participants will program their own (basic) MCMC sampler to illustrate the concepts and fully understand the strengths and weaknesses of the general approach. The day will end with an introduction to the bugs language. Introduction to MCMC. The curse of dimensionality & the advantages of MCMC sampling to determine a posterior distribution. Monte Carlo integration, standard error, & summarising samples from posterior distributions in R. Writing a Metropolis algorithm & generating a posterior distribution for a simple problem using MCMC. Markov chains, autocorrelation & convergence. Definition of a Markov chain. Autocorrelation, effective sample size and Monte Carlo error. The concept of a stationary distribution and burnin. Requirement for convergence diagnostics, and common statistics for assessing convergence. Adapting an existing Metropolis algorithm to use two chains, & assessing the effect of the sampling distribution on the autocorrelation. Introduction to BUGS running simple models in JAGS. Introduction to the BUGS language & how a BUGS model is translated to an MCMC sampler during compilation. The difference between deterministic & stochastic nodes, & the contribution of priors & the likelihood. Running, extending & interpreting the output of simple JAGS models from within R using the runjags interface. Wednesday 17th – Classes from 09:00 to 17:00 Module 3: Common models for which jags/bugs would be used in practice, with examples given for different types of model code. All aspects of writing, running, assessing and interpreting these models will be extensively discussed so that participants are able and confident to run similar models on their own. There will be a particularly heavy focus on practical sessions during this day. The day will finish with a discussion of how to assess the fit of mcmc models using the deviance information criterion (dic) and other methods. Using JAGS for common problems in biology. Understanding and generating code for basic generalised linear mixed models in JAGS. Syntax for quadratic terms and interaction terms in JAGS. Essential fitting tips and model selection. The need for minimal cross- correlation and independence between parameters and how to design a model with these properties. The practical methods and implications of minimizing Monte Carlo error and autocorrelation, including thinning. Interpreting the DIC for nested
[ECOLOG-L] Introduction to Frequentist and Bayesian mixed (Hierarchical) models (IFBM01)
General intro course on Frequentist and Bayesian mixed (Hierarchical) models (IFBM01) https://www.prstatistics.com/course/introduction-to-frequentist-and- bayesian-mixed-hierarchical-modelsiifbm01/ Final, few places available. This course will take place from the 8th - 12th October 2018 in Glasgow city centre using a varied range of examples from life-sciences Course Overview: This course will cover introductory mixed or hierarchical modelling (fixed and random effects models) for real-world data sets from both a Frequentist and Bayesian perspective. These methods lie at the forefront of statistics research and are a vital tool in the scientist’s toolbox. The course focuses on introducing concepts and demonstrating good practice in mixed modelling. All methods are demonstrated with data sets which participants can run themselves. Participants will be taught how to fit hierarchical models using both the standard lme4 mixed effects models library in R, together with the Bayesian modelling framework via rstanarm. The course covers the full gamut from simple regression models through to full generalised multivariate mixed structures. The relevant advantages and disadvantages of both the Frequentist and Bayesian approaches will be presented.. Participants are encouraged to bring their own data sets for discussion with the course tutors. Monday 8th – Classes from 09:30 to 17:30 Basic concepts Class 1: Introduction; some example datasets; overview of course Class 2: Revision: probability distributions and likelihood Class 3: Maximum likelihood and bootstrap uncertainties Practical: revision on using R to load data, create plots and fit statistical models. Tuesday 9th – Classes from 09:30 to 17:30 Intro to mixed models Class 1: Linear and generalised linear models (GLMs) Class 2: Simple mixed regression models Class 3: Generalised Linear Mixed Models (GLMMs) Practical: introduction to lme4 Wednesday 10th – Classes from 09:00 to 17:00 Bayesian hierarchical models Class 1: Introduction to Bayesian inference Class 2: Bayesian computation and Markov chain Monte Carlo Class 3: Bayesian Hierarchical Models (BHMs) Practical: Introduction to rstanarm Thursday 11th – Classes from 09:00 to 17:00 Extending mixed models Class 1: Multivariate and multi-layer hierarchical models Class 2: Shrinkage and variable selection Class 3: Non-Linear mixed models Friday 12th – Classes from 09:30 to 16:00 Advanced topics and bring your own data Class 1: Extending Bayesian models Class 2: Using stan (instead of rstanarm) for richer inference Practical: analyse and get help with your data. Email oliverhoo...@psstatistics.com Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatsistics.com (Behaviour and cognition) 1. October 1st – 5th TIME SERIES MODELS FOR ECOLOGISTS (TSME02) Glasgow, Dr Andrew Parnell https://www.prstatistics.com/course/time-series-models-foe-ecologists- tsme02/ 2. October 1st – 5th 2018 INTRODUCTION TO LINUX WORKFLOWS FOR BIOLOGISTS (IBUL03) Glasgow, Scotland, Dr. Martin Jones https://www.prinformatics.com/course/introduction-to-linux-workflows-for- biologists-ibul03/ 3. October 8th – 12th 2018 INTRODUCTION TO FREQUENTIST AND BAYESIAN MIXED (HIERARCHICAL) MODELS (IFBM01) Glasgow, Scotland, Dr Andrew Parnell https://www.psstatistics.com/course/introduction-to-frequentis-and-bayesian- mixed-models-ifbm01/ 4. October 15th – 19th 2018 APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS (ABME04) Glasgow, Scotland, Dr. Matt Denwood, Emma Howard http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists- epidemiologists-abme04/ 5. October 23rd – 25th 2018 INTRODUCTIUON TO R (This is a private ‘in-house’ course) London, England, Dr William Hoppitt 6. October 29th – November 2nd 2018 INTRODCUTION TO R AND STATISTICS FOR BIOLOGISTS (IRFB02) Glasgow, Scotland, Dr. Olivier Gauthier https://www.prstatistics.com/course/introduction-to-statistics-and-r-for- biologists-irfb02/ 7. October 29th – November 2nd 2018 INTRODUCTION TO BIOINFORMATICS FOR DNA AND RNA SEQUENCE ANALYSIS (IBDR01) Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith www.prinformatics.com/course/precision-medicine-bioinformatics-from-raw- genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 8. November 5th – 8th 2018 PHYLOGENETIC COMPARATIVE METHODS FOR STUDYING DIVERSIFICATION AND PHENOTYPIC EVOLUTION (PCME01) Glasgow, Scotland, Dr. Antigoni Kaliontzopoulou https://www.prstatistics.com/course/phylogenetic-comparative-methods-for- studying-diversification-and-phenotypic-evolution-pcme01/ 9. November 19th – 23rd 2018 STRUCTUAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (SEMR02) Glasgow, Scotland, Dr. Jonathan Lefcheck https://www.prstatistics.com/course/structural-equation-modelling-for- ecologists-and-evolutionary-biologists-semr02/
[ECOLOG-L] Time series analysis for ecologists - last few places
, Dr. Jonathan Lefcheck https://www.prstatistics.com/course/structural-equation-modelling-for- ecologists-and-evolutionary-biologists-semr02/ 11.November 26th – 30th 2018 FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION (FEER01) Glasgow, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 12.December 3rd – 7th 2018 INTRODUCTION TO BAYESIAN DATA ANALYSIS FOR SOCIAL AND BEHAVIOURAL SCIENCES USING R AND STAN (BDRS01) Glasgow, Dr. Mark Andrews https://www.psstatistics.com/course/introduction-to-bayesian-data-analysis- for-social-and-behavioural-sciences-using-r-and-stan-bdrs01/ 13.January 21st – 25th 2019 STATISTICAL MODELLING OF TIME-TO-EVENT DATA USING SURVIVAL ANALYSIS: AN INTRODUCTION FOR ANIMAL BEHAVIOURISTS, ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (TTED01) Glasgow, Scotland, Dr. Will Hoppitt https://www.psstatistics.com/course/statistical-modelling-of-time-to-event- data-using-survival-analysis-tted01/ 14.January 21st – 25th 2019 ADVANCING IN STATISTICAL MODELLING USING R (ADVR08) Glasgow, Scotland, Dr. Luc Bussiere, Dr. Tom Houslay http://www.prstatistics.com/course/advancing-statistical-modelling-using-r- advr08/ 15.January 28th– February 1st 2019 AQUATIC ACOUSTIC TELEMETRY DATA ANALYSIS AND SURVEY DESIGN Glasgow, Scotland, VEMCO staff and affiliates https://www.prstatistics.com/course/aquatic-acoustic-telemetry-data- analysis-atda01/ 16.4th – 8th February 2019 DESIGNING RELIABLE AND EFFICIENT EXPERIMENTS FOR SOCIAL SCIENCES (DRES01) Glasgow, Scotland, Dr. Daniel Lakens https://www.psstatistics.com/course/designing-reliable-and-effecient- experiments-for-social-sciences-dres01/ 17.February 11th – 15th 2019 REPRODUCIBLE DATA SCIEDNCE FOR POPULATION GENETICS Glasgow, Scotland, Dr. Thibaut Jombart, Dr. Zhain Kamvar https://www.prstatistics.com/course/reproducible-data-science-for- population-genetics-rdpg02/ 18.25th February – 1st March 2019 MOVEMENT ECOLOGY (MOVE02) Margam Discovery Centre, Wales, Dr. Luca Borger, Prof. Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move02/ 19.March 4th – 8th 2019 BIOACUSTIC DATA ANALYSIS Glasgow, Scotland, Dr. Paul Howden-Leach https://www.prstatistics.com/course/bioacoustics-for-ecologists-hardware- survey-design-and-data-analysis-biac01/ 20.March 18th – 22nd 2019 ECOLOGICAL NICHE MODELLING USING R (ENMR03) Glasgow, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr03/ 21.March 25th – 29th 2019 LANDSCAPE GENETIC/GENOMIC DATA ANALYSIS USING R (LNDG03) Glasgow, Scotland, Prof. Rodney Dyer http://www.prstatistics.com/course/landscape-genetic-data-analysis-using-r- lndg03/ 22.A pril 1st – 5th 2019 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R (IPSY01) Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre http://www.psstatistics.com/course/introduction-to-statistics-using-r-for- psychologists-ipsy02/ 23.April 8th – 12th MACHINE LEARNING Glasgow Scotland, Dr Aristides (Aris) Moustakas https://www.prstatistics.com/course/machine-learning-using-r-mlur01/ -- Oliver Hooker PhD. PR statistics 2018 publications - Alternative routes to piscivory: Contrasting growth trajectories in brown trout (Salmo trutta) ecotypes exhibiting contrasting life history strategies. Ecology of Freshwater Fish. DOI to follow Phenotypic and resource use partitioning amongst sympatric lacustrine brown trout, Salmo trutta. Biological Journal of the Linnean Society. DOI 10.1093/biolinnean/bly032 prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/
[ECOLOG-L] Intrduction to R for bioloigsts
ANALYSIS AND SURVEY DESIGN Glasgow, Scotland, VEMCO staff and affiliates https://www.prstatistics.com/course/aquatic-acoustic-telemetry-data- analysis-atda01/ 16.4th – 8th February 2019 DESIGNING RELIABLE AND EFFICIENT EXPERIMENTS FOR SOCIAL SCIENCES (DRES01) Glasgow, Scotland, Dr. Daniel Lakens https://www.psstatistics.com/course/designing-reliable-and-effecient- experiments-for-social-sciences-dres01/ 17.February 11th – 15th 2019 REPRODUCIBLE DATA SCIEDNCE FOR POPULATION GENETICS Glasgow, Scotland, Dr. Thibaut Jombart, Dr. Zhain Kamvar https://www.prstatistics.com/course/reproducible-data-science-for- population-genetics-rdpg02/ 18.25th February – 1st March 2019 MOVEMENT ECOLOGY (MOVE02) Margam Discovery Centre, Wales, Dr. Luca Borger, Prof. Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move02/ 19.March 4th – 8th 2019 BIOACUSTIC DATA ANALYSIS Glasgow, Scotland, Dr. Paul Howden-Leach https://www.prstatistics.com/course/bioacoustics-for-ecologists-hardware- survey-design-and-data-analysis-biac01/ 20.March 18th – 22nd 2019 ECOLOGICAL NICHE MODELLING USING R (ENMR03) Glasgow, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr03/ 21.March 25th – 29th 2019 LANDSCAPE GENETIC/GENOMIC DATA ANALYSIS USING R (LNDG03) Glasgow, Scotland, Prof. Rodney Dyer http://www.prstatistics.com/course/landscape-genetic-data-analysis-using-r- lndg03/ 22.A pril 1st – 5th 2019 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R (IPSY01) Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre http://www.psstatistics.com/course/introduction-to-statistics-using-r-for- psychologists-ipsy02/ 23.April 8th – 12th MACHINE LEARNING Glasgow Scotland, Dr Aristides (Aris) Moustakas https://www.prstatistics.com/course/machine-learning-using-r-mlur01/ -- Oliver Hooker PhD. PR statistics 2018 publications - Alternative routes to piscivory: Contrasting growth trajectories in brown trout (Salmo trutta) ecotypes exhibiting contrasting life history strategies. Ecology of Freshwater Fish. DOI to follow Phenotypic and resource use partitioning amongst sympatric lacustrine brown trout, Salmo trutta. Biological Journal of the Linnean Society. DOI 10.1093/biolinnean/bly032 prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/
[ECOLOG-L] Eukaryotic metabarcoding (EUKB01) Deadline 13.07.18
https://www.psstatistics.com/course/statistical-modelling-of-time-to-event- data-using-survival-analysis-tted01/ 13.January 21st – 25th 2019 ADVANCING IN STATISTICAL MODELLING USING R (ADVR08) Glasgow, Scotland, Dr. Luc Bussiere, Dr. Tom Houslay http://www.prstatistics.com/course/advancing-statistical-modelling-using-r- advr08/ 14.28th January – 1st February 2019 AQUATIC ACOUSTIC TELEMETRY DATA ANALYSIS AND SURVEY DESIGN Glasgow, Scotland, VEMCO staff and affiliates https://www.prstatistics.com/course/aquatic-acoustic-telemetry-data- analysis-atda01/ 15.4th – 8th February 2019 DESIGNING RELIABLE AND EFFICIENT EXPERIMENTS FOR SOCIAL SCIENCES (DRES01) Glasgow, Scotland, Dr. Daniel Lakens https://www.psstatistics.com/course/designing-reliable-and-effecient- experiments-for-social-sciences-dres01/ 16.February 11th – 15th 2019 REPRODUCIBLE DATA SCIEDNCE FOR POPULATION GENETICS Glasgow, Scotland, Dr. Thibaut Jombart, Dr. Zhain Kamvar https://www.prstatistics.com/course/reproducible-data-science-for- population-genetics-rdpg02/ 17.25th February – 1st March 2019 MOVEMENT ECOLOGY (MOVE02) Margam Discovery Centre, Wales, Dr. Luca Borger, Prof. Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move02/ 18.March 4th – 8th 2019 BIOACUSTIC DATA ANALYSIS Glasgow, Scotland, Dr. Paul Howden-Leach LiNk coming soon 19.March 18th – 22nd 2019 ECOLOGICAL NICHE MODELLING USING R (ENMR03) Glasgow, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr03/ 20.March 25th – 29th 2019 LANDSCAPE GENETIC/GENOMIC DATA ANALYSIS USING R (LNDG03) Glasgow, Scotland, Prof. Rodney Dyer http://www.prstatistics.com/course/landscape-genetic-data-analysis-using-r- lndg03/ 21.April 1st – 5th 2019 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R (IPSY01) Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre http://www.psstatistics.com/course/introduction-to-statistics-using-r-for- psychologists-ipsy02/ -- Oliver Hooker PhD. PR statistics 2018 publications - Phenotypic and resource use partitioning amongst sympatric lacustrine brown trout, Salmo trutta. Biological Journal of the Linnean Society. DOI 10.1093/biolinnean/bly032 prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] Introduction to Frequentist and Bayesian mixed (Hierarchical) models - Oct 2019
staff and affiliates https://www.prstatistics.com/course/aquatic-acoustic-telemetry-data- analysis-atda01/ 15.4th – 8th February 2019 DESIGNING RELIABLE AND EFFICIENT EXPERIMENTS FOR SOCIAL SCIENCES (DRES01) Glasgow, Scotland, Dr. Daniel Lakens https://www.psstatistics.com/course/designing-reliable-and-effecient- experiments-for-social-sciences-dres01/ 16.February 11th – 15th 2019 REPRODUCIBLE DATA SCIEDNCE FOR POPULATION GENETICS Glasgow, Scotland, Dr. Thibaut Jombart, Dr. Zhain Kamvar https://www.prstatistics.com/course/reproducible-data-science-for- population-genetics-rdpg02/ 17.25th February – 1st March 2019 MOVEMENT ECOLOGY (MOVE02) Margam Discovery Centre, Wales, Dr. Luca Borger, Prof. Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move02/ 18.March 4th – 8th 2019 BIOACUSTIC DATA ANALYSIS Glasgow, Scotland, Dr. Paul Howden-Leach LiNk coming soon 19.March 18th – 22nd 2019 ECOLOGICAL NICHE MODELLING USING R (ENMR03) Glasgow, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr03/ 20.March 25th – 29th 2019 LANDSCAPE GENETIC/GENOMIC DATA ANALYSIS USING R (LNDG03) Glasgow, Scotland, Prof. Rodney Dyer http://www.prstatistics.com/course/landscape-genetic-data-analysis-using-r- lndg03/ 21.April 1st – 5th 2019 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R (IPSY01) Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre http://www.psstatistics.com/course/introduction-to-statistics-using-r-for- psychologists-ipsy02/ -- Oliver Hooker PhD. PR statistics 2018 publications - Phenotypic and resource use partitioning amongst sympatric lacustrine brown trout, Salmo trutta. Biological Journal of the Linnean Society. DOI 10.1093/biolinnean/bly032 prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] Course on population genetics - Feb 2019 - Thibaut Jombart and Zhian Kamvar
FOR ANIMAL BEHAVIOURISTS, ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (TTED01) Glasgow, Scotland, Dr. Will Hoppitt https://www.psstatistics.com/course/statistical-modelling-of-time-to-event- data-using-survival-analysis-tted01/ 13.January 21st – 25th 2019 ADVANCING IN STATISTICAL MODELLING USING R (ADVR08) Glasgow, Scotland, Dr. Luc Bussiere, Dr. Tom Houslay http://www.prstatistics.com/course/advancing-statistical-modelling-using-r- advr08/ 14.28th January – 1st February 2019 AQUATIC ACOUSTIC TELEMETRY DATA ANALYSIS AND SURVEY DESIGN Glasgow, Scotland, VEMCO staff and affiliates https://www.prstatistics.com/course/aquatic-acoustic-telemetry-data- analysis-atda01/ 15.4th – 8th February 2019 DESIGNING RELIABLE AND EFFICIENT EXPERIMENTS FOR SOCIAL SCIENCES (DRES01) Glasgow, Scotland, Dr. Daniel Lakens https://www.psstatistics.com/course/designing-reliable-and-effecient- experiments-for-social-sciences-dres01/ 16.February 11th – 15th 2019 REPRODUCIBLE DATA SCIEDNCE FOR POPULATION GENETICS Glasgow, Scotland, Dr. Thibaut Jombart, Dr. Zhain Kamvar https://www.prstatistics.com/course/reproducible-data-science-for- population-genetics-rdpg02/ 17.25th February – 1st March 2019 MOVEMENT ECOLOGY (MOVE02) Margam Discovery Centre, Wales, Dr. Luca Borger, Prof. Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move02/ 18.March 4th – 8th 2019 BIOACUSTIC DATA ANALYSIS Glasgow, Scotland, Dr. Paul Howden-Leach LiNk coming soon 19.March 18th – 22nd 2019 ECOLOGICAL NICHE MODELLING USING R (ENMR03) Glasgow, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr03/ 20.March 25th – 29th 2019 LANDSCAPE GENETIC/GENOMIC DATA ANALYSIS USING R (LNDG03) Glasgow, Scotland, Prof. Rodney Dyer http://www.prstatistics.com/course/landscape-genetic-data-analysis-using-r- lndg03/ 21.April 1st – 5th 2019 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R (IPSY01) Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre http://www.psstatistics.com/course/introduction-to-statistics-using-r-for- psychologists-ipsy02/ -- Oliver Hooker PhD. PR statistics 2018 publications - Phenotypic and resource use partitioning amongst sympatric lacustrine brown trout, Salmo trutta. Biological Journal of the Linnean Society. DOI 10.1093/biolinnean/bly032 prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] Statistical modelling of time-to-event data using survival analysis: an introduction for animal behaviourists, ecologists and evolutionary biologists (TTED01)
Statistical modelling of time-to-event data using survival analysis: an introduction for animal behaviourists, ecologists and evolutionary biologists (TTED01) https://www.psstatistics.com/course/statistical-modelling-of-time-to-event- data-using-survival-analysis-tted01/ This course will be delivered by Dr Will Hoppitt in Glasgow and will run from the 21st - 25th Jan 2019. Course Overview: Survival analysis is a set of statistical methods initially designed to analyse data giving the times at which individuals die, and assess the effect that different predictor variables have on the rate of death. However, its applications are much broader than this: it can be used to analyse any time-to-event data. Ecologists and evolutionary biologists often encounter data of this kind. Often factors influencing survival itself will be of interest. But there are many other cases, e.g. what factors influence the time of first breeding? Or the time taken to reach maturity? Animal behaviourists too will encounter this type of data frequently, e.g. what factors influence the time it takes to learn a novel behaviour pattern? Or the time to respond to a stimulus? etc. And yet the techniques of survival analysis are not generally well known by researchers in these disciplines. In this course, you will learn how to apply survival analysis models to quantify the effect that predictor variables (continuous or discrete) have on the rate at which events occur, and how to test hypotheses about these effects. We will focus on a flexible modelling technique called the Cox proportional hazards model, which makes minimal assumptions about the underlying probability distributions. You will learn how to fit and interpret these models, how to evaluate its assumptions, and how to extend it to model time dependent variables, random effects, multistate models and competing risks models. Monday 21st – Classes from 09:30 to 17:30 Module 1: Statistical modelling of rates and times Module 2: Parametric survival models and the Cox model Tuesday 22nd – Classes from 09:30 to 17:30 Module 3: Fitting Cox models Module 4: Interpreting Cox Models Wednesday 23rd – Classes from 09:30 to 17:30 Module 5: Evaluating the proportional hazard assumption Module 6: Stratified Cox models Thursday 24th – Classes from 09:30 to 17:30 Module 7: Time dependent variables Module 8: Frailty Models and Multistate models Friday 25th – Classes from 09:30 to 17:30 Module 9: Competing risks models Module 10: Open session Email oliverhoo...@psstatistics.com Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatsistics.com (Behaviour and cognition) 1. June 12th - 15th 2018 SPECIES DISTRIBUTION MODELLING (DBMR01) Myuna Bay sport and recreation, Australia, Prof. Jane Elith, Dr. Gurutzeta Guillera www.prstatistics.com/course/species-distribution-models-using-r-sdmr01/ 2. June 25th – 29th 2018 SPECIES DISTRIBUTION/OCCUPANCY MODELLING USING R (OCCU01) Glasgow, Scotland, Dr. Darryl McKenzie (PROTEUS) www.prstatistics.com/course/species-distributionoccupancy-modelling-using-r- occu01/ 3. July 2nd - 5th 2018 SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R (SNAR01) Glasgow, Scotland, Prof. James Curley http://www.psstatistics.com/course/social-network-analysis-for-behavioral- scientists-snar01/ 4. July 8th – 12th 2018 MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R (MBMV02) Glasgow, Scotland, Prof. David Warton www.prstatistics.com/course/model-base-multivariate-analysis-of-abundance- data-using-r-mbmv02/ 5. July 23rd – 27th 2018 EUKARYOTIC METABARCODING (EUKB01) Glasgow, Scotland, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ 6. September 24th – 28th INTRODUCTION TO MIXED (HIERARCHICAL) MODELS FOR LIFE SCIENCES USING R (IMLS01) Glasgow, Scotland, Prof. Subhash Lele https://www.psstatistics.com/course/introduction-to-mixed-hierarchical- models-for-life-sciences-using-r-imls01/ 7. October 1st – 5th INTRODUCTION TO LINUX WORKFLOWS FOR BIOLOGISTS (IBUL03) Glasgow, Scotland, Dr. Martin Jones https://www.prinformatics.com/course/introduction-to-linux-workflows-for- biologists-ibul03/ 8. October 8th – 12th 2018 INTRODUCTION TO SPATIAL ANALYSIS OF ECOLOGICAL DATA USING R (ISAE01) Glasgow, Scotland, Prof. Subhash Lele https://www.prstatistics.com/course/introduction-to-spatial-analysis-of- ecological-data-using-r-isae01/ 9. October 8th – 12th 2018 INDIVIDUAL BASED MODELS USING NETLOGO AND R Glasgow, Scotland, Dr. Andrew Jackson Link to follow 10.October 15th – 19th 2018 APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS (ABME Glasgow, Scotland, Dr. Matt Denwood, Emma Howard http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists- epidemiologists-abme04/ 11.October 29th – November 2nd 2018
[ECOLOG-L] Landscape genetic/genomic data analysis using R - Prof Rodney Dyer - Feb
Landscape genetic/genomic data analysis using R (LNDG03) https://www.prstatistics.com/course/landscape-genetic-data-analysis-using-r- lndg03/ This course will be delivered by Prof Rodney Dyer in Glasgow from 25th - 29th March 2019. Course Overview: The term ‘landscape genetics’ has been applied studies that integrate ecological context and intervening landscape into population genetic analyses of contemporary processes such as gene flow and migration. This course will cover the basics of both quantitative landscape ecology and population genetics, focusing on how we develop and evaluate spatial/genetic analyses using the R platform. Monday 25th – Classes from 09:30 to 17:30 Module 1: Spatial & Ecological Data. Installation & configuring R & RStudio Acquiring spatial data, projections, and visualization Vector and raster data Tuesday 26th – Classes from 09:30 to 17:30 Module 2: Genetic markers and basic analyses Genetic markers and sampling Genetic distance, diversity, and structure Ordination techniques based upon genetic markers Wednesday 27th – Classes from 09:30 to 17:30 Module 3: Integrating spatial and genetic data Barrier detection & population division Resistance Modeling Mantel and distance regressions Remote sensing – LiDAR and Hyperspectral data Thursday 28th – Classes from 09:00 to 17:00 Module 4: Integrating spatial and genetic data Spatial autocorrelation Network Approaches PCMN & Redundancy Friday 29th – Classes from 09:30 to 16:00 Module 5: Adaptive Genetic Variance Outliers & gradients Quantitative genetics, why we should care. Chromosome walking Email oliverhoo...@prstatistics.com Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatsistics.com (Behaviour and cognition) 1. June 12th - 15th 2018 SPECIES DISTRIBUTION MODELLING (DBMR01) Myuna Bay sport and recreation, Australia, Prof. Jane Elith, Dr. Gurutzeta Guillera www.prstatistics.com/course/species-distribution-models-using-r-sdmr01/ 2. June 25th – 29th 2018 SPECIES DISTRIBUTION/OCCUPANCY MODELLING USING R (OCCU01) Glasgow, Scotland, Dr. Darryl McKenzie (PROTEUS) www.prstatistics.com/course/species-distributionoccupancy-modelling-using-r- occu01/ 3. July 2nd - 5th 2018 SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R (SNAR01) Glasgow, Scotland, Prof. James Curley http://www.psstatistics.com/course/social-network-analysis-for-behavioral- scientists-snar01/ 4. July 8th – 12th 2018 MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R (MBMV02) Glasgow, Scotland, Prof. David Warton www.prstatistics.com/course/model-base-multivariate-analysis-of-abundance- data-using-r-mbmv02/ 5. July 23rd – 27th 2018 EUKARYOTIC METABARCODING (EUKB01) Glasgow, Scotland, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ 6. September 24th – 28th INTRODUCTION TO MIXED (HIERARCHICAL) MODELS FOR LIFE SCIENCES USING R (IMLS01) Glasgow, Scotland, Prof. Subhash Lele https://www.psstatistics.com/course/introduction-to-mixed-hierarchical- models-for-life-sciences-using-r-imls01/ 7. October 1st – 5th INTRODUCTION TO LINUX WORKFLOWS FOR BIOLOGISTS (IBUL03) Glasgow, Scotland, Dr. Martin Jones https://www.prinformatics.com/course/introduction-to-linux-workflows-for- biologists-ibul03/ 8. October 8th – 12th 2018 INTRODUCTION TO SPATIAL ANALYSIS OF ECOLOGICAL DATA USING R (ISAE01) Glasgow, Scotland, Prof. Subhash Lele https://www.prstatistics.com/course/introduction-to-spatial-analysis-of- ecological-data-using-r-isae01/ 9. October 8th – 12th 2018 INDIVIDUAL BASED MODELS USING NETLOGO AND R Glasgow, Scotland, Dr. Andrew Jackson Link to follow 10. October 15th – 19th 2018 APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS (ABME Glasgow, Scotland, Dr. Matt Denwood, Emma Howard http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists- epidemiologists-abme04/ 11. October 29th – November 2nd 2018 INTRODCUTION TO R AND STATISTICS FOR BIOLOGISTS (IRFB02) Glasgow, Scotland, Dr. Olivier Gauthier Link to follow – see previous https://www.prstatistics.com/course/introduction-to-statistics-and-r-for- biologists-irfb01/ 12. October 29th – November 2nd 2018 INTRODUCTION TO BIOINFORMATICS FOR DNA AND RNA SEQUENCE ANALYSIS (IBDR01) Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith www.prinformatics.com/course/precision-medicine-bioinformatics-from-raw- genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 13. November 5th – 8th 2018 PHYLOGENETIC COMPARATIVE METHODS FOR STUDYING DIVERSIFICATION AND PHENOTYPIC EVOLUTION (PCME01) Glasgow, Scotland, Dr. Antigoni Kaliontzopoulou https://www.prstatistics.com/course/phylogenetic-comparative-methods-for- studying-diversification-and-phenotypic-evolution-pcme01/ 14. November 19th – 23rd 2018 STRUCTUAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY
[ECOLOG-L] Movement ecology (MOVE02) - Repeat scheduled for February 2019
www.prstatistics.com/course/introduction-to-spatial-analysis-of- ecological-data-using-r-isae01/ 9. October 8th – 12th 2018 INDIVIDUAL BASED MODELS USING NETLOGO AND R Glasgow, Scotland, Dr. Andrew Jackson Link to follow 10. October 15th – 19th 2018 APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS (ABME Glasgow, Scotland, Dr. Matt Denwood, Emma Howard http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists- epidemiologists-abme04/ 11. October 29th – November 2nd 2018 INTRODCUTION TO R AND STATISTICS FOR BIOLOGISTS (IRFB02) Glasgow, Scotland, Dr. Olivier Gauthier Link to follow – see previous https://www.prstatistics.com/course/introduction-to-statistics-and-r-for- biologists-irfb01/ 12. October 29th – November 2nd 2018 INTRODUCTION TO BIOINFORMATICS FOR DNA AND RNA SEQUENCE ANALYSIS (IBDR01) Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith www.prinformatics.com/course/precision-medicine-bioinformatics-from-raw- genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 13. November 5th – 8th 2018 PHYLOGENETIC COMPARATIVE METHODS FOR STUDYING DIVERSIFICATION AND PHENOTYPIC EVOLUTION (PCME01) Glasgow, Scotland, Dr. Antigoni Kaliontzopoulou https://www.prstatistics.com/course/phylogenetic-comparative-methods-for- studying-diversification-and-phenotypic-evolution-pcme01/ 14. November 19th – 23rd 2018 STRUCTUAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (SEMR02) Glasgow, Scotland, Dr. Jonathan Lefcheck Link to follow – see previous https://www.prstatistics.com/course/structural-equation-modelling-for- ecologists-and-evolutionary-biologists-semr01/ 15. November 26th – 30th 2018 FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION (FEER Glasgow, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 16. January 21st – 25th 2019 STATISTICAL MODELLING OF TIME-TO-EVENT DATA USING SURVIVAL ANALYSIS: AN INTRODUCTION FOR ANIMAL BEHAVIOURISTS, ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (TTED01) Glasgow, Scotland, Dr. Will Hoppitt https://www.psstatistics.com/course/statistical-modelling-of-time-to-event- data-using-survival-analysis-tted01/ 17. 28th January – 1st February 2019 AQUATIC ACOUSTIC TELEMETRY DATA ANALYSIS AND SURVEY DESIGN Glasgow, Scotland, VEMCO staff and affiliates https://www.prstatistics.com/course/aquatic-acoustic-telemetry-data- analysis-atda01/ 18. 4th – 8th February 2018 DESIGNING RELIABLE AND EFFICIENT EXPERIMENTS FOR SOCIAL SCIENCES (DRES01) Glasgow, Scotland, Dr. Daniel Lakens https://www.psstatistics.com/course/designing-reliable-and-effecient- experiments-for-social-sciences-dres01/ 19. 25th February – 1st March 2019 MOVEMENT ECOLOGY (MOVE02) Margam Discovery Centre, Wales, Dr. Luca Borger, Prof. Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move02/ 20. March 25th – 29th 2019 LANDSCAPE GENETIC/GENOMIC DATA ANALYSIS USING R (LNDG03) Glasgow, Scotland, Prof. Rodney Dyer http://www.prstatistics.com/c -- Oliver Hooker PhD. PR statistics 2018 publications - Phenotypic and resource use partitioning amongst sympatric lacustrine brown trout, Salmo trutta. Biological Journal of the Linnean Society. DOI 10.1093/biolinnean/bly032 prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340ourse/landscape-genetic-data-analysis-using-r-lndg03
[ECOLOG-L] new course - Aquatic Acoustic Telemetry Data Analysis (ATDA01)
-to-linux-workflows-for- biologists-ibul03/ 8. October 8th – 12th 2018 INTRODUCTION TO SPATIAL ANALYSIS OF ECOLOGICAL DATA USING R (ISAE01) Glasgow, Scotland, Prof. Subhash Lele https://www.prstatistics.com/course/introduction-to-spatial-analysis-of- ecological-data-using-r-isae01/ 9. October 8th – 12th 2018 INDIVIDUAL BASED MODELS USING NETLOGO AND R Glasgow, Scotland, Dr. Andrew Jackson Link to follow 10. October 15th – 19th 2018 APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS (ABME Glasgow, Scotland, Dr. Matt Denwood, Emma Howard http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists- epidemiologists-abme04/ 11. October 29th – November 2nd 2018 INTRODCUTION TO R AND STATISTICS FOR BIOLOGISTS (IRFB02) Glasgow, Scotland, Dr. Olivier Gauthier Link to follow – see previous https://www.prstatistics.com/course/introduction-to-statistics-and-r-for- biologists-irfb01/ 12. October 29th – November 2nd 2018 INTRODUCTION TO BIOINFORMATICS FOR DNA AND RNA SEQUENCE ANALYSIS (IBDR01) Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith www.prinformatics.com/course/precision-medicine-bioinformatics-from-raw- genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 13. November 5th – 8th 2018 PHYLOGENETIC COMPARATIVE METHODS FOR STUDYING DIVERSIFICATION AND PHENOTYPIC EVOLUTION (PCME01) Glasgow, Scotland, Dr. Antigoni Kaliontzopoulou https://www.prstatistics.com/course/phylogenetic-comparative-methods-for- studying-diversification-and-phenotypic-evolution-pcme01/ 14. November 19th – 23rd 2018 STRUCTUAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (SEMR02) Glasgow, Scotland, Dr. Jonathan Lefcheck Link to follow – see previous https://www.prstatistics.com/course/structural-equation-modelling-for- ecologists-and-evolutionary-biologists-semr01/ 15. November 26th – 30th 2018 FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION (FEER Glasgow, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 16. January 21st – 25th 2019 STATISTICAL MODELLING OF TIME-TO-EVENT DATA USING SURVIVAL ANALYSIS: AN INTRODUCTION FOR ANIMAL BEHAVIOURISTS, ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (TTED01) Glasgow, Scotland, Dr. Will Hoppitt https://www.psstatistics.com/course/statistical-modelling-of-time-to-event- data-using-survival-analysis-tted01/ 17. 28th January – 1st February 2019 AQUATIC ACOUSTIC TELEMETRY DATA ANALYSIS AND SURVEY DESIGN Glasgow, Scotland, VEMCO staff and affiliates https://www.prstatistics.com/course/aquatic-acoustic-telemetry-data- analysis-atda01/ 18. 4th – 8th February 2018 DESIGNING RELIABLE AND EFFICIENT EXPERIMENTS FOR SOCIAL SCIENCES (DRES01) Glasgow, Scotland, Dr. Daniel Lakens https://www.psstatistics.com/course/designing-reliable-and-effecient- experiments-for-social-sciences-dres01/ 19. 25th February – 1st March 2019 MOVEMENT ECOLOGY (MOVE02) Margam Discovery Centre, Wales, Dr. Luca Borger, Prof. Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move02/ 20. March 25th – 29th 2019 LANDSCAPE GENETIC/GENOMIC DATA ANALYSIS USING R (LNDG03) Glasgow, Scotland, Prof. Rodney Dyer http://www.prstatistics.com/course/landscape-genetic-data-analysis-using-r- lndg03 -- Oliver Hooker PhD. PR statistics 2018 publications - Phenotypic and resource use partitioning amongst sympatric lacustrine brown trout, Salmo trutta. Biological Journal of the Linnean Society. DOI 10.1093/biolinnean/bly032 prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] Suggestions for assembly and annotation of genomes course instructors?
Hi list users, Another reach out after a great response regarding bio-acoustics. I was wondering if anyone can suggest or has attended a course on the assembly and annotation of genomes that they would recommend? We have had a few enquiries regarding this so any suggestions (recommendations) of possible instructors would be much appreciated. Thanks in advance, Oliver email oliverhoo...@statistics.com
[ECOLOG-L] Model base multivariate analysis of abundance data using R registration deadline 28th June
o-clinical-interpretation-pmbi01/ 18. November 5th – 8th 2018 PHYLOGENETIC COMPARATIVE METHODS FOR STUDYING DIVERSIFICATION AND PHENOTYPIC EVOLUTION (PCME01) Glasgow, Scotland, Dr. Antigoni Kaliontzopoulou https://www.prstatistics.com/course/phylogenetic-comparative-methods-for- studying-diversification-and-phenotypic-evolution-pcme01/ 19. November 19th – 23rd 2018 STRUCTUAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (SEMR02) Glasgow, Scotland, Dr. Jonathan Lefcheck Link to follow – see previous https://www.prstatistics.com/course/structural-equation-modelling-for- ecologists-and-evolutionary-biologists-semr01/ 20. November 26th – 30th 2018 FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION (FEER Glasgow, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 21. January 21st – 25th 2019 STATISTICAL MODELLING OF TIME-TO-EVENT DATA USING SURVIVAL ANALYSIS: AN INTRODUCTION FOR ANIMAL BEHAVIOURISTS, ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (TTED01) Glasgow, Scotland, Dr. Will Hoppitt https://www.psstatistics.com/course/statistical-modelling-of-time-to-event- data-using-survival-analysis-tted01/ 22. February 2018 TBC MOVEMENT ECOLOGY (MOVE02) Venue TBC, Dr. Luca Borger, Prof. Ronny Wilson, Dr Jonathan Potts Link to follow – see previous www.prstatistics.com/course/movement-ecology-move01/ 23. February 2018 TBC AQUATIC ACOUSTIC TELEMETRY DATA ANALYSIS AND SURVEY DESIGN Glasgow, Scotland, VEMCO staff and affiliates Link to follow Oliver Hooker PhD. PR statistics 2018 publications - Phenotypic and resource use partitioning amongst sympatric lacustrine brown trout, Salmo trutta. Biological Journal of the Linnean Society. DOI 10.1093/biolinnean/bly032 prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] Species Distribution / Occupancy modelling registration deadline 15th June
tt Denwood, Emma Howard http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists- epidemiologists-abme04/ 15. October 15th – 19th 2018 ANALYSING TIME TO EVENT DATA (SURVIVAL ANALYSIS) Glasgow, Scotland, Dr. Wil Hoppitt Link to follow 16. October 29th – November 2nd 2018 INTRODCUTION TO R AND STATISTICS FOR BIOLOGISTS (IRFB02) Glasgow, Scotland, Dr. Olivier Gauthier Link to follow – see previous https://www.prstatistics.com/course/introduction-to-statistics-and-r-for- biologists-irfb/ 17. October 29th – November 2nd 2018 INTRODUCTION TO BIOINFORMATICS FOR DNA AND RNA SEQUENCE ANALYSIS (IBDR01) Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith www.prinformatics.com/course/precision-medicine-bioinformatics-from-raw- genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 18. November 5th – 8th 2018 PHYLOGENETIC COMPARATIVE METHODS FOR STUDYING DIVERSIFICATION AND PHENOTYPIC EVOLUTION (PCME01) Glasgow, Scotland, Dr. Antigoni Kaliontzopoulou https://www.prstatistics.com/course/phylogenetic-comparative-methods-for- studying-diversification-and-phenotypic-evolution-pcme01/ 19. November 19th – 23rd 2018 STRUCTUAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (SEMR02) Glasgow, Scotland, Dr. Jonathan Lefcheck Link to follow – see previous https://www.prstatistics.com/course/structural-equation-modelling-for- ecologists-and-evolutionary-biologists-semr01/ 20. November 26th – 30th 2018 FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION (FEER Glasgow, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 21. January 21st – 25th 2019 STATISTICAL MODELLING OF TIME-TO-EVENT DATA USING SURVIVAL ANALYSIS: AN INTRODUCTION FOR ANIMAL BEHAVIOURISTS, ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (TTED01) Glasgow, Scotland, Dr. Will Hoppitt https://www.psstatistics.com/course/statistical-modelling-of-time-to-event- data-using-survival-analysis-tted01/ 22. February 2018 TBC MOVEMENT ECOLOGY (MOVE02) Venue TBC, Dr. Luca Borger, Prof. Ronny Wilson, Dr Jonathan Potts Link to follow – see previous www.prstatistics.com/course/movement-ecology-move01/ 23. February 2018 TBC AQUATIC ACOUSTIC TELEMETRY DATA ANALYSIS AND SURVEY DESIGN Glasgow, Scotland, VEMCO staff and affiliates Link to follow Oliver Hooker PhD. PR statistics 2018 publications - Phenotypic and resource use partitioning amongst sympatric lacustrine brown trout, Salmo trutta. Biological Journal of the Linnean Society. DOI 10.1093/biolinnean/bly032 prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] Online course for Class for Mapping Plants With Drones
Phytomappers Pro: A Master Class for Mapping Plants With Drones https://www.prstatistics.com/course/phytomappers-pro-a-master-class-for- mapping-plants-with-drones/ https://scholarfarms.teachable.com/p/phytomappers/?affcode=147027_ggwq9qs9 Course Overview: Phytomappers Pro was created to scale drone education for agricultural and other related verticals, such as scientific, forestry, and environmental consultancies. This course walks step-by-step through everything you’d need to know to get started mapping plants professionally, including: • The theory behind vegetation indices, such as NDVI • Best-practices for image capture • Drone and camera hardware • Mission planning software • Image processing and data outputs using Pix4D • Cloud tools • Example datasets We teach you how to map plants with drones. That’s all we do and we try to be the best at it. Please note this course can be started at any time and is not constrained to the dates above Who is this masterclass for? Drone Service Providers Know what clients expect, how to best capture that data for them, and how to present completed mapping data. With this class you can go from having never flown for ag before through delivering perfect results for farms and commercial agriculture clients. Commercial Agriculture For users in organizations that are involved commercially with plants and want to adopt drone technology, we can guide existing programs to better results and help teams start from scratch and build effective processes. Researchers & Academics If you want to adopt drone mapping technology into your lab or course and aren’t sure where to start or how to get the best results, we present comprehensive options and documentation for a variety of use cases. Your Instructor Dr. Gregory Crutsinger Dr. Crutsinger has a PhD in ecology and was a tenure-track professor as a major research university before joining the drone industry. He has worked for some of the leading drone hardware and software companies to help integrate education, analytics, and the plant sciences. Full details and booking can be found here: https://scholarfarms.teachable.com/p/phytomappers/?affcode=147027_ggwq9qs9
[ECOLOG-L] Bioacoustic courses - recommendations?
Hi Ecologers, I was wondering if anyone has attended or knows of any courses out there aimed at the field of bioacoustics, collecting, handling and analysing these types of data. You can send any replies to my direct email oliverhoo...@prstsatistics.com so as not to overwhelm other list users. Thanks in advance, Oliver
[ECOLOG-L] Introduction to bioinformatics for DNA and RNA sequence analysis (IBDR01)
MODELLING USING R (OCCU01) Glasgow, Scotland, Dr. Darryl McKenzie (PROTEUS) www.prstatistics.com/course/species-distributionoccupancy-modelling-using-r- occu01/ 9. July 2nd - 5th 2018 SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R (SNAR01) Glasgow, Scotland, Prof. James Curley http://www.psstatistics.com/course/social-network-analysis-for-behavioral- scientists-snar01/ 10. July 8th – 12th 2018 MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R (MBMV02) Glasgow, Scotland, Prof. David Warton www.prstatistics.com/course/model-base-multivariate-analysis-of-abundance- data-using-r-mbmv02/ 11. July 23rd – 27th 2018 EUKARYOTIC METABARCODING (EUKB01) Glasgow, Scotland, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ 12. October 1st – 5th Introduction to Linux workflows for biologists (IBUL03) Glasgow, Scotland, Dr. Martin Jones https://www.prinformatics.com/course/introduction-to-linux-workflows-for- biologists-ibul03/ 13. October 8th – 12th 2018 INTRODUCTION TO SPATIAL ANALYSIS OF ECOLOGICAL DATA USING R (ISAE01) Glasgow, Scotland, Prof. Subhash Lele https://www.prstatistics.com/course/introduction-to-spatial-analysis-of- ecological-data-using-r-isae01/ 14. October 8th – 12th 2018 INDIVIDUAL BASED MODELS USING NETLOGO AND R Glasgow, Scotland, Dr. Andrew Jackson Link to follow 15. October 15th – 19th 2018 APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS (ABME Glasgow, Scotland, Dr. Matt Denwood, Emma Howard http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists- epidemiologists-abme04/ 16. October 15th – 19th 2018 ANALYSING TIME TO EVENT DATA (SURVIVAL ANALYSIS) Glasgow, Scotland, Dr. Wil Hoppitt Link to follow 17. October 29th – November 2nd 2018 INTRODCUTION TO R AND STATISTICS FOR BIOLOGISTS (IRFB02) Glasgow, Scotland, Dr. Olivier Gauthier Link to follow – see previous https://www.prstatistics.com/course/introduction-to-statistics-and-r-for- biologists-irfb/ 18. October 29th – November 2nd 2018 PRECISION MEDICINE BIOINFORMATICS: FROM RAW GENOME AND TRANSCRIPTOME DATA TO CLINICAL INTERPRETATION (PMBI01) Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith www.prinformatics.com/course/precision-medicine-bioinformatics-from-raw- genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 19. November 5th – 8th 2018 PHYLOGENETIC COMPARATIVE METHODS FOR STUDYING DIVERSIFICATION AND PHENOTYPIC EVOLUTION (PCME01) Glasgow, Scotland, Dr. Antigoni Kaliontzopoulou https://www.prstatistics.com/course/phylogenetic-comparative-methods-for- studying-diversification-and-phenotypic-evolution-pcme01/ 20. November 19th – 23rd 2018 STRUCTUAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (SEMR02) Glasgow, Scotland, Dr. Jonathan Lefcheck Link to follow – see previous https://www.prstatistics.com/course/structural-equation-modelling-for- ecologists-and-evolutionary-biologists-semr01/ 21. November 26th – 30th 2018 FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION (FEER Glasgow, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 22. February 2018 TBC MOVEMENT ECOLOGY (MOVE02) Venue TBC, Dr. Luca Borger, Prof. Ronny Wilson, Dr Jonathan Potts Link to follow – see previous www.prstatistics.com/course/movement-ecology-move01/ 23. February 2018 TBC AQUATIC ACOUSTIC TELEMETRY DATA ANALYSIS AND SURVEY DESIGN Glasgow, Scotland, VEMCO staff and affiliates Link to follow Oliver Hooker PhD. PR informatics 2018 publications - Phenotypic and resource use partitioning amongst sympatric lacustrine brown trout, Salmo trutta. Biological Journal of the Linnean Society. DOI 10.1093/biolinnean/bly032 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] Repeat of - Structural Equation Modelling (SEM) for Ecologists and Evolutionary Biologists
BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS (ABME Glasgow, Scotland, Dr. Matt Denwood, Emma Howard http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists- epidemiologists-abme04/ 16. October 15th – 19th 2018 ANALYSING TIME TO EVENT DATA (SURVIVAL ANALYSIS) Glasgow, Scotland, Dr. Wil Hoppitt Link to follow 17. October 29th – November 2nd 2018 INTRODCUTION TO R AND STATISTICS FOR BIOLOGISTS (IRFB02) Glasgow, Scotland, Dr. Olivier Gauthier Link to follow – see previous https://www.prstatistics.com/course/introduction-to-statistics-and-r-for- biologists-irfb/ 18. October 29th – November 2nd 2018 PRECISION MEDICINE BIOINFORMATICS: FROM RAW GENOME AND TRANSCRIPTOME DATA TO CLINICAL INTERPRETATION (PMBI01) Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith www.prinformatics.com/course/precision-medicine-bioinformatics-from-raw- genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 19. November 5th – 8th 2018 PHYLOGENETIC COMPARATIVE METHODS FOR STUDYING DIVERSIFICATION AND PHENOTYPIC EVOLUTION (PCME01) Glasgow, Scotland, Dr. Antigoni Kaliontzopoulou https://www.prstatistics.com/course/phylogenetic-comparative-methods-for- studying-diversification-and-phenotypic-evolution-pcme01/ 20. November 19th – 23rd 2018 STRUCTUAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS (SEMR02) Glasgow, Scotland, Dr. Jonathan Lefcheck Link to follow – see previous https://www.prstatistics.com/course/structural-equation-modelling-for- ecologists-and-evolutionary-biologists-semr01/ 21. November 26th – 30th 2018 FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION (FEER Glasgow, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 22. February 2018 TBC MOVEMENT ECOLOGY (MOVE02) Venue TBC, Dr. Luca Borger, Prof. Ronny Wilson, Dr Jonathan Potts Link to follow – see previous www.prstatistics.com/course/movement-ecology-move01/ 23. February 2018 TBC AQUATIC ACOUSTIC TELEMETRY DATA ANALYSIS AND SURVEY DESIGN Glasgow, Scotland, VEMCO staff and affiliates Link to follow -- Oliver Hooker PhD. PR statistics 2018 publications - Phenotypic and resource use partitioning amongst sympatric lacustrine brown trout, Salmo trutta. Biological Journal of the Linnean Society. DOI 10.1093/biolinnean/bly032 prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] Final call for Stable Isotope Mixing Models using SIBER, SIAR, MixSIAR
Stable Isotope Mixing Models using SIBER, SIAR, MixSIAR (SIMM04) https://www.prstatistics.com/course/stable-isotope-mixing-models-using-r- simm04/ This course will be delivered by Dr Andrew Parnell and Dr Andrew Jackson from 28th - 31st May 2018 at Orford Musique, 3165 Chemin du Parc, Orford, QC J1X 7A2, Canada Course overview: This course will cover the concepts, technical background and use of stable isotope mixing models (SIMMs) with a particular focus on running them in R. This course will cover the concepts, technical background and use of stable isotope mixing models (SIMMs) with a particular focus on running them in R. Recently SIMMs have become a very popular tool for quantifying food webs and thus the diet of predators and prey in an ecosystem. Starting with only basic understanding of statistical models, we will cover the do’s and don’ts of using SIMMs with a particular focus on the widely used package SIAR and the more advanced MixSIAR. Participants will be taught some of the advanced features of these packages, which will enable them to produce a richer class of output, and are encouraged to bring their own data sets and problems to study during the round-table discussions. Sunday 27th Meet at Orford Musique Between 16:00 and 20:00. Monday 28th Basic concepts. Module 1: Introduction; why use a SIMM? Module 2: An introduction to bayesian statistics. Module 3: Differences between regression models and SIMMs. Practical: Revision on using R to load data, create plots and fit statistical models. Round table discussion: Understanding the output from a Bayesian model. Tuesday 29th – Classes from 09:00 to 17:00 Understanding and using SIAR. Module 4: Do’s and Don’ts of using SIAR. Module 5: The statistical model behind SIAR. Practical: Using SIAR for real-world data sets; reporting output; creating richer summaries and plots. Round table discussion: Issues when using simple SIMMs. Wednesday 30th – Classes from 09:00 to 17:00 SIBER and MixSIAR. Module 6: Creating and understanding Stable Isotope Bayesian Ellipses (SIBER). Module 7: What are the differences between SIAR and MixSIAR? Practical: Using MixSIAR on real world data sets; benefits over SIAR. Round table discussion: When to use which type of SIMM. Thursday 31st – Classes from 09:00 to 17:00 Advanced SIMMs. Module 8: Using MixSIAR for complex data sets: time series and mixed effects models. Module 9: Source grouping: when and how? Module 10: Building your own SIMM with JAGS. Practical: Running advanced SIMMs with JAGS. Round table discussion: Bring your own data set. Email oliverheoo...@prsratistics.com Oliver Hooker PhD. PR statistics 2018 publications -
[ECOLOG-L] Registration deadline for Species distribution models using R (Jane Elith and Gurutzeta Guillera)
Species distribution models using R (SDMR01) https://www.prstatistics.com/course/species-distribution-models-using-r- sdmr01/ Deadline for registration is 21/05/2018 This course will be delivered by Prof. Jane Elith, Dr. Gurutzeta Guillera and Jose Square form the 12th - 15th June 2018 at Myuna Bay Sport and Recreation, Wangi Road, Myuna Bay, New South Wales 2264 Australia Course Overview: The aim of this four-day course is to work towards an understanding of, and practical ability to fit, species distribution models (SDMs). It will be useful if you plan to use SDMs, or if you just want to understand them better. We will focus on statistical models of species distributions – those that combine observed species records with environmental data. Using a mixture of lectures, computer exercises and case studies, participants will learn to: 1) identify relevant data, and prepare it for modelling; 2) fit models using several modelling methods (including Maxent, generalized linear models and their extensions, and boosted regression trees); 3) consider how to model species if detection is imperfect; 4) evaluate models and interpret them; 5) understand the range of practical issues that arise in typical applications of SDMs. Practical sessions will use the free statistical software, R – prior experience (even if some practice before you come) will be useful. Example data will be provided but participants may also bring their own data. Presenters include Jane Elith and Gurutzeta Guillera-Arroita, who are highly experienced in SDMs. If you have any questions please email oliverhoo...@prstatistics.com Monday 11th Meet at Myuna Bay Sport and |recreation at approx. 18:30 Tuesday 12th – Classes from 09:00 to 17:00 Overview of modelling distributions; niches and theory The modelling process – key concepts Predictor variables Species data Practical: start working with supplied data Methods for presence-absence data; introduction to use of regression models for species modelling Wednesday 13th – Classes from 09:00 to 17:00 Generalised linear models (GLMs) and GLMMS Practical using GLMs with data How to evaluate models – lecture and practical Occupancy-detection models – lecture and practical Thursday 14th – Classes from 09:00 to 17:00 What if no absence data? – introduction to presence-only and background data Practical: GLM with background data Relative probabilities, point processes Maxent – lecture and practical Evaluation for presence-background models How to deal with biased data Friday 15th – Classes from 09:00 to 16:00 Boosted regression trees – lecture and practical Complexity vs simplicity in models Using models for extrapolation Hot topics: where is species modelling heading? Oliver Hooker PhD. PR statistics 2018 publications - Phenotypic and resource use partitioning amongst sympatric lacustrine brown trout, Salmo trutta. Biological Journal of the Linnean Society. DOI 10.1093/biolinnean/bly032
[ECOLOG-L] PARTFUNDED SCHOLARHPS for Stable Isotope Mixing Models using SIBER, SIAR, MixSIAR
stralia, Dr. Jon Lefcheck www.prstatistics.com/course/structural-equation-modelling-for-ecologists- and-evolutionary-biologists-semr02/ 11. June 25th – 29th 2018 SPECIES DISTRIBUTION/OCCUPANCY MODELLING USING R (OCCU01) Glasgow, Scotland, Dr. Darryl McKenzie www.prstatistics.com/course/species-distributionoccupancy-modelling-using-r- occu01/ 12. July 2nd - 5th 2018 SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R (SNAR01) Glasgow, Scotland, Prof James Curley http://www.psstatistics.com/course/social-network-analysis-for-behavioral- scientists-snar01/ 13. July 8th – 12th 2018 MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R (MBMV02) Glasgow, Scotland, Prof David Warton www.prstatistics.com/course/model-base-multivariate-analysis-of-abundance- data-using-r-mbmv02/ 14. July 16th – 20th 2018 PRECISION MEDICINE BIOINFORMATICS: FROM RAW GENOME AND TRANSCRIPTOME DATA TO CLINICAL INTERPRETATION (PMBI01) Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith www.prinformatics.com/course/precision-medicine-bioinformatics-from-raw- genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 15. July 23rd – 27th 2018 EUKARYOTIC METABARCODING (EUKB01) Glasgow, Scotland, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ 16. October 8th – 12th 2018 INTRODUCTION TO SPATIAL ANALYSIS OF ECOLOGICAL DATA USING R (ISAE01) Glasgow, Scotland, Prof. Subhash Lele https://www.prstatistics.com/course/introduction-to-spatial-analysis-of- ecological-data-using-r-isae01/ 17. October 15th – 19th 2018 APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS (ABME Glasgow, Scotland, Dr. Matt Denwood, Emma Howard http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists- epidemiologists-abme04/ 18. October 29th – November 2nd 2018 PHYLOGENETIC COMPARATIVE METHODS FOR STUDYING DIVERSIFICATION AND PHENOTYPIC EVOLUTION (PCME01) Glasgow, Scotland, Prof. Subhash Lele Dr. Antigoni Kaliontzopoulou https://www.prstatistics.com/course/phylogenetic-comparative-methods-for- studying-diversification-and-phenotypic-evolution-pcme01/ 19. November 26th – 30th 2018 FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION (FEER Glasgow, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 20. February 2018 TBC MOVEMENT ECOLOGY (MOVE02) Margam Discovery Centre, Wales, Dr Luca Borger, Dr Ronny Wilson, Dr Jonathan Potts www.prstatistics.com/course/movement-ecology-move01/ Oliver Hooker PhD. PR statistics 2018 publications - Phenotypic and resource use partitioning amongst sympatric lacustrine brown trout, Salmo trutta. Biological Jouranl of the Linnean Society. DOI 10.1093/biolinnean/bly032 prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] Applied Bayesian modelling for ecologists and epidemiologists
Applied Bayesian modelling for ecologists and epidemiologists (ABME04) https://www.prstatistics.com/course/applied-bayesian-modelling-for- ecologists-and-epidemiologists-abme04/ This course will run from the 15th - 19th October 2018 in Glasgow city centre and will be delivered by Dr Matt Denwood. Course Overview: This application-driven course will provide a founding in the basic theory & practice of Bayesian statistics, with a focus on MCMC modeling for ecological & epidemiological problems. Starting from a refresher on probability & likelihood, the course will take students all the way to cutting-edge applications such as state-space population modelling & spatial point-process modelling. By the end of the week, you should have a basic understanding of how common MCMC samplers work and how to program them, and have practical experience with the BUGS language for common ecological and epidemiological models. The experience gained will be a sufficient foundation enabling you to understand current papers using Bayesian methods, carry out simple Bayesian analyses on your own data and springboard into more elaborate applications such as dynamical, spatial and hierarchical modelling. Monday 15th Module 1: Revision of likelihoods using full likelihood profiles and an introduction to the theory of Bayesian statistics. Probability and likelihood. Conditional, joint and total probability, independence, Baye’s law. Probability distributions. Uniform, Bernoulli, Binomial, Poisson, Gamma, Beta and Normal distributions – their range, parameters and common uses of Likelihood and parameter estimation by maximum likelihood. Numerical likelihood profiles and maximum likelihood. Introduction to Bayesian statistics. Relationship between prior, likelihood & posterior distributions. Summarising a posterior distribution; The philosophical differences between frequentist & Bayesian statistics, & the practical implications of these. Applying Bayes’ theorem to discrete & continuous data for common data types given different priors. Building a posterior profile for a given dataset, & compare the effect of different priors for the same data. Tuesday 16th Module 2: An introduction to the workings of MCMC, and the potential dangers of MCMC inference. Participants will program their own (basic) MCMC sampler to illustrate the concepts and fully understand the strengths and weaknesses of the general approach. The day will end with an introduction to the bugs language. Introduction to MCMC. The curse of dimensionality & the advantages of MCMC sampling to determine a posterior distribution. Monte Carlo integration, standard error, & summarising samples from posterior distributions in R. Writing a Metropolis algorithm & generating a posterior distribution for a simple problem using MCMC. Markov chains, autocorrelation & convergence. Definition of a Markov chain. Autocorrelation, effective sample size and Monte Carlo error. The concept of a stationary distribution and burnin. Requirement for convergence diagnostics, and common statistics for assessing convergence. Adapting an existing Metropolis algorithm to use two chains, & assessing the effect of the sampling distribution on the autocorrelation. Introduction to BUGS running simple models in JAGS. Introduction to the BUGS language & how a BUGS model is translated to an MCMC sampler during compilation. The difference between deterministic & stochastic nodes, & the contribution of priors & the likelihood. Running, extending & interpreting the output of simple JAGS models from within R using the runjags interface. Wednesday 17th Module 3: Common models for which jags/bugs would be used in practice, with examples given for different types of model code. All aspects of writing, running, assessing and interpreting these models will be extensively discussed so that participants are able and confident to run similar models on their own. There will be a particularly heavy focus on practical sessions during this day. The day will finish with a discussion of how to assess the fit of mcmc models using the deviance information criterion (dic) and other methods. Using JAGS for common problems in biology. Understanding and generating code for basic generalised linear mixed models in JAGS. Syntax for quadratic terms and interaction terms in JAGS. Essential fitting tips and model selection. The need for minimal cross- correlation and independence between parameters and how to design a model with these properties. The practical methods and implications of minimizing Monte Carlo error and autocorrelation, including thinning. Interpreting the DIC for nested models, and understanding the limitations of how this is calculated. Other methods of model selection and where these might be more useful than DIC. Most commonly used methods Rationale and use for fixed threshold, ABGD, K/theta, PTP, GMYC with computer practicals. Other methods,
[ECOLOG-L] Introduction to Linux workflows for biologists (IBUL03)
Introduction to Linux workflows for biologists (IBUL03) https://www.prinformatics.com/course/introduction-to-linux-workflows-for- biologists-ibul03/ This course will run from October 1st -5th October 2018 in Glasgow city centre and will be delivered by Dr Martin Jones. Course Overview: Most high-throughput bioinformatics work these days takes place on the Linux command line. The programs which do the majority of the computational heavy lifting — genome assemblers, read mappers, and annotation tools — are designed to work best when used with a command-line interface. Because the command line can be an intimidating environment, many biologists learn the bare minimum needed to get their analysis tools working. This means that they miss out on the power of Linux to customize their environment and automate many parts of the bioinformatics workflow. This course will introduce the Linux command line environment from scratch and teach students how to make the most of its tools to achieve a high level of productivity when working with biological data. Monday 1st Module 1: The design of Linux. In the first session we briefly cover the design of Linux: how is it different from Windows/OSX and how is it best used? We’ll then jump straight onto the command line and learn about the layout of the Linux file system and how to navigate it. We’ll describe Linux’s file permission system (which often trips up beginners), how paths work, and how we actually run programs on the command line. We’ll learn a few tricks for using the command line more efficiently, and how to deal with programs that are misbehaving. We’ll finish this session by looking at the built in help system and how to read and interpret manual pages. Module 2: System management. We’ll first look at a few command line tools for monitoring the status of the system and keeping track of what’s happening to processor power, memory, and disk space. We’ll go over the process of installing new software from the built in repositories (which is easy) and from source code downloads (which is trickier). We’ll also introduce some tools for benchmarking software (measuring the time/memory requirements of processing large datasets). Tuesday 2nd Module 3: Manipulating tabular data. Many data types we want to work with in bioinformatics are stored as tabular plain text files, and here we learn all about manipulating tabular data on the command line. We’ll start with simple things like extracting columns, filtering and sorting, searching for text before moving on to more complex tasks like searching for duplicated values, summarizing large files, and combining simple tools into long commands. Module 4: Constructing pipelines. In this session we will look at the various tools Linux has for constructing pipelines out of individual commands. Aliases, shell redirection, pipes, and shell scripting will all be introduced here. We’ll also look at a couple of specific tools to help with running tools on multiple processors, and for monitoring the progress of long running tasks. Wednesday 3rd – Classes from 09:00 to 17:00 Module 5: EMBOSS. EMBOSS is a suite of bioinformatics command-line tools explicitly designed to work in the Linux paradigm. We’ll get an overview of the different sequence data formats that we might expect to work with, and put what we learned about shell scripting to biological use by building a pipeline to compare codon usage across two collections of DNA sequences. Module 6: – Using a Linux server. Often in bioinformatics we’ll be working on a Linux server rather than our own computer— typically because we need access to more computing power, or to specialized tools and datasets. In this session we’ll learn how to connect to a Linux server and how to manage sessions. We’ll also consider the various ways of moving data to and from a server from your own computer, and finish with a discussion of the considerations we have to make when working on a shared computer. Thursday 4th Module 7: Combining methods. In the next two sessions — i.e. one full day — we’ll put everything we have learned together and implement a workflow for next-gen sequence analysis. In this first session we’ll carry out quality control on some paired-end Illumina data and map these reads to a reference genome. We’ll then look at various approaches to automating this pipeline, allowing us to quickly do the same for a second dataset. Module 8: Combining methods. The second part of the next-gen workflow is to call variants to identify SNPs between our two samples and the reference genome. We’ll look at the VCF file format and figure out how to filter SNPs for read coverage and quality. By counting the number of SNPs between each sample and the reference we will try to figure out something about the biology of the two samples. We’ll attempt to automate this analysis in various ways so that we could easily repeat the pipeline for
[ECOLOG-L] Part funded SCHOLARSHIP Introduction to Mixed (Hierarchical) models for biologists using R
PR STATISTICS ARE PLEASED TO ANNOUNCE THAT THROUGH THEIR FUNDING SCHEME THEY CAN OFFER 5 PART-FUNDED SCHOLARSHIPS FOR OUR UP-COMING COURSE "Introduction to Mixed (Hierarchical) models for biologists using R (IMBR01)" This course will run from 14TH - 18TH May 2018 at Orford Musique, 3165 Chemin du Parc, Orford, QC J1X 7A2, Canada Please note the venue is easily reached by shuttle direct form the airport SCHOLARSHIPS CONTRIBUTE TOWARDS TUITION FEES WITH 5 PLACES’ AVAILABLE AT £225.00 (Fees have been subsidised by 50% from £550.00). Accommodation packages can be added for an additional £300.00 for the week including all meals etc. at the course venue (highly recommended) Applications should be sent to oliverhoo...@prstatistics.com and contain the following. 1. Full name 2. Institute name 3. PhD subject title or Post doc research questions 4. Do you hold a funded position 5. 150 words why this course would be relevant to your research or how it would help. Application deadline is Monday 16th April 2018 We still have ‘normal’ places available for anyone else interested. Full course details are given below https://www.prstatistics.com/course/introduction-to-mixed-hierarchical- models-for-biologists-using-r-imbr01/
[ECOLOG-L] Part funded SCHOLARSHIPS for Advances in Spatial Analysis of Multivariate Ecological Data
PR STATISTICS ARE PLEASED TO ANNOUNCE THAT THROUGH THEIR FUNDING SCHEME THEY CAN OFFER 5 PART-FUNDED SCHOLARSHIPS FOR OUR UP-COMING COURSE "Advances in Spatial Analysis of Multivariate Ecological Data: Theory and Practice (MVSP03)" This course will run from 7TH - 11TH May 2018 at Orford Musique, 3165 Chemin du Parc, Orford, QC J1X 7A2, Canada Please note the venue is easily reached by shuttle direct form the airport SCHOLARSHIPS CONTRIBUTE TOWARDS TUITION FEES WITH 5 PLACES’ AVAILABLE AT £300.00 (Fees have been subsidised by 50% from £600.00). Accommodation packages can be added for an additional £300.00 for the week including all meals etc. at the course venue (highly recommended) Applications should be sent to oliverhoo...@prstatistics.com and contain the following. 1. Full name 2. Institute name 3. PhD subject title or Post doc research questions 4. Do you hold a funded position 5. 150 words why this course would be relevant to your research or how it would help. Application deadline is Monday 16th April 2018 We still have ‘normal’ places available for anyone else interested. Full course details are given below https://www.prstatistics.com/course/advances-in-spatial-analysis-of- multivariate-ecological-data-theory-and-practice-mvsp03/
[ECOLOG-L] pecies distribution/occupancy modelling using PRESENCE and R
Species distribution/occupancy modelling using PRESENCE and R (OCCU01) Full details can be found here; http://bit.ly/2EwtvlpSPECIES_DIST_MOD This course will run form 25th - 29th June 2018 in Glasgow City Centre and will be delivered by Darryl MacKenzie http://bit.ly/2EwtvlpSPECIES_DIST_MOD Course Overview: The presence or absence of a species across a set of landscape units is a fundamental concept widely used in ecology (e.g., species range or distribution, epidemiology, habitat modeling, resource selection probability functions, as a monitoring metric, metapopulation studies, biodiversity and species co-occurrence). An important sampling issue, however, is that a species may not always be detected when present at a landscape unit. This will result in “false absences” causing parameter estimates to be biased if unaccounted for, possibly leading to misleading results and conclusions, even with moderate levels of imperfect detection. This workshop will cover many of the latest methods for modeling patterns and dynamics of species occurrence in a landscape while accounting for the imperfect detection of the species. Including: • estimating level of occurrence at single point in time • identifying factors that influence species occurrence • creating species distribution maps • modelling changes in distribution over time • study design Participants will be introduced to available software through worked examples, and there will be special emphasis on aspects of study design. While primarily aimed at the beginner and intermediate level, more experienced researchers will also benefit from attending. The first four days will comprise of formal lectures and exercises, and the final morning will be an informal discussion/consulting session where participants can work on their own data, talk one-on-one with the instructor, etc. Email oliverhoo...@prstatistics.com with any questions Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatsistics.com (Behaviour and cognition) 1. April 9th – 13th 2018 NETWORK ANAYLSIS FOR ECOLOGISTS USING R (NTWA02 Glasgow, Scotland, Dr. Marco Scotti www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 2. April 16th – 20th 2018 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R (IPSY01) Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre http://www.psstatistics.com/course/introduction-to-statistics-using-r-for- psychologists-ipsy01/ 3. April 23rd – 27th 2018 MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE (VGNR01) Glasgow, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet www.prstatistics.com/course/multivariate-analysis-of-ecological-communities- in-r-with-the-vegan-package-vgnr01/ 4. April 30th – 4th May 2018 QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES (QGER01) Glasgow, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick www.prstatistics.com/course/quantitative-geographic-ecology-using-r- modelling-genomes-niches-and-communities-qger01/ 5. May 7th – 11th 2018 ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R (MVSP02) CANADA (QUEBEC), Prof. Pierre Legendre, Dr. Guillaume Blanchet www.prstatistics.com/course/advances-in-spatial-analysis-of-multivariate- ecological-data-theory-and-practice-mvsp03/ 6. May 14th - 18th 2018 INTRODUCTION TO MIXED (HIERARCHICAL) MODELS FOR BIOLOGISTS (IMBR01) CANADA (QUEBEC), Prof Subhash Lele www.prstatistics.com/course/introduction-to-mixed-hierarchical-models-for- biologists-using-r-imbr01/ 7. May 21st - 25th 2018 INTRODUCTION TO PYTHON FOR BIOLOGISTS (IPYB05) SCENE, Scotland, Dr. Martin Jones http://www.prinformatics.com/course/introduction-to-python-for-biologists- ipyb05/ 8. May 21st - 25th 2018 INTRODUCTION TO REMOTE SENISNG AND GIS FOR ECOLOGICAL APPLICATIONS (IRMS01) Glasgow, Scotland, Prof. Duccio Rocchini, Dr. Luca Delucchi www.prinformatics.com/course/introduction-to-remote-sensing-and-gis-for- ecological-applications-irms01/ 9. May 28th – 31st 2018 STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR (SIMM04) CANADA (QUEBEC) Dr. Andrew Parnell, Dr. Andrew Jackson www.prstatistics.com/course/stable-isotope-mixing-models-using-r-simm04/ 10. May 28th – June 1st 2018 ADVANCED PYTHON FOR BIOLOGISTS (APYB02) SCENE, Scotland, Dr. Martin Jones www.prinformatics.com/course/advanced-python-biologists-apyb02/ 11. June 12th - 15th 2018 SPECIES DISTRIBUTION MODELLING (DBMR01) Myuna Bay sport and recreation, Australia, Prof. Jane Elith, Dr. Gurutzeta Guillera www.prstatistics.com/course/species-distribution-models-using-r-sdmr01/ 12. June 18th – 22nd 2018 STRUCTURAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS USING R (SEMR02) Myuna Bay sport and recreation, Australia, Dr. Jon Lefcheck
[ECOLOG-L] Social Network Analysis for Behavioural Scientists using R
Social Network Analysis for Behavioural Scientists using R (SNAR01) Full details can be found at; http://bit.ly/2DEVnDlSOCIAL_NETWORK_ANALYSIS This course will take place in Glasgow city entre for 2nd - 6th July 2018 and will be delivered by Prof. James Curley. Course Overview: This workshop will provide students with the opportunity to learn how to use social network analysis to analyze social relational datasets such as human friendship networks or animal social networks. Attendees will learn how to use R and several R packages including igraph, sna, network, asnipe, timeordered, tsna to create network graphs, calculate descriptive network metrics, use randomization and random models to evaluate the significance of these metrics, determine graph structural properties including community structures, use QAP and MRQAP methods to assess how network characteristics relate to other individual and relational attributes, and measure change over time in dynamic networks. Attendees will also learn how to produce high quality network visualizations using R. Monday 2nd Elementary concepts. Module 1: Introduction to Social Networks Theory. This will cover central themes of social network analysis: the major data formats, structures and collection methods, the different types of graphs and networks; how to generate and visualize social networks and generate basic descriptive statistics, and what hypotheses and questions can be addressed using social network analysis. We will also discuss data types and questions of interest to attendees. Module 2: R refresher and R packages. This module will provide a quick overview of the major packages used for social network analysis in R including ‘igraph’, ‘sna’, ‘network’. We shall learn how to convert raw data formats to network objects in R; how to interface with R network objects and how to create simple network visualizations. Module 3: Intro to Visualizing Networks. We shall cover how to generate and beautify networks using the ‘igraph’ R package covering issues such as layout decisions, coloring and sizing of nodes and edges by network attributes, metrics or community. We shall extend this to cover how to create dynamic three-dimentional network plots using the R package ‘threejs’. We shall also discuss how to use the ‘ggplot’ based ‘ggraph’ R package which has many customizable features for plotting networks. Tuesday 3rd Basic analyses. Module 4: Identifying important nodes and edges. Learn how to evaluate key indicators of each node’s significance to the network including, degree centrality, eigenvector centrality, power centrality, and betweenness. Describe how to calculate for directed vs. undirected and weighted vs unweighted networks. Learn how to assess simple relationships between nodes including geodesic distances, identifying neighbors, determining shortest and longest paths. Module 5: Introduction to Network Randomization and Random Models. It is critical in network analysis to evaluate how likely it is to observe a given network metric for our network of interest. This module will introduce how to use null models (randomizations/permutations or random graphs) to test whether networks have characteristics that are especially surprising after accounting for non-independence. We also will learn how to generate confidence intervals for network metrics and carry out significance testing. We shall learn how to use the ‘igraph’ package for random graph generation. Module 6: Network Graph Characteristics. We shall cover concepts such as dyad and triad censuses, transitivity, assortativity, homophily, reciprocity, clustering and density. We shall discuss their significance and importance for answering relevant questions to the patterns of social associations and behavior in networks. Wednesday 4th Extending Network Analysis. Module 7: Community Detection. Overview of what communities (modules) mean for animal and human social networks – that a high proportion of nodes or edge weights cluster within a sub-group of nodes/edges rather than between sub-groups. We shall review the numerous community detection methods and describe the implementation of major ones in R. How to generate robustness in evaluation of community detection. How to to determine the degree of community structure in a network using the index of modularity (Q) and bootstrapping techniques such as community assortativity (rcom). Hierarchical clustering for analysis of hierarchically organized social societies. Module 8: Randomizations and Random models II. This module will further explore how to determine the appropriate choice of null models for behavioral data. This is not always a trivial exercise for behavioral datasets. We will use the ‘asnipe’ R package for network permutation and ‘igraph’ R package for null model generation. We shall also cover options for dealing with missing data, low sampling rates and pseudo- replication,
[ECOLOG-L] CANADA - Introduction to Mixed (Hierarchical) models for biologists using R
David Warton www.prstatistics.com/course/model-base-multivariate-analysis-of-abundance- data-using-r-mbmv02/ 17.July 16th – 20th 2018 PRECISION MEDICINE BIOINFORMATICS: FROM RAW GENOME AND TRANSCRIPTOME DATA TO CLINICAL INTERPRETATION (PMBI01) Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith www.prinformatics.com/course/precision-medicine-bioinformatics-from-raw- genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 18.July 23rd – 27th 2018 EUKARYOTIC METABARCODING (EUKB01) Glasgow, Scotland, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ 19.October 8th – 12th 2018 INTRODUCTION TO SPATIAL ANALYSIS OF ECOLOGICAL DATA USING R (ISAE01) Glasgow, Scotland, Prof. Subhash Lele https://www.prstatistics.com/course/introduction-to-spatial-analysis-of- ecological-data-using-r-isae01/ 20.October 15th – 19th 2018 APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS (ABME Glasgow, Scotland, Dr. Matt Denwood, Emma Howard http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists- epidemiologists-abme04/ 21.October 29th – November 2nd 2018 PHYLOGENETIC COMPARATIVE METHODS FOR STUDYING DIVERSIFICATION AND PHENOTYPIC EVOLUTION (PCME01) Glasgow, Scotland, Prof. Subhash Lele Dr. Antigoni Kaliontzopoulou https://www.prstatistics.com/course/phylogenetic-comparative-methods-for- studying-diversification-and-phenotypic-evolution-pcme01/ 22.November 26th – 30th 2018 FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION (FEER Glasgow, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 23.February 2018 TBC MOVEMENT ECOLOGY (MOVE02) Margam Discovery Centre, Wales, Dr Luca Borger, Dr Ronny Wilson, Dr Jonathan Potts www.prstatistics.com/course/movement-ecology-move01/ -- Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] CANADA - Stable Isotope Mixing Models using SIBER, SIAR, MixSIAR (SIMM04)
Stable Isotope Mixing Models using SIBER, SIAR, MixSIAR (SIMM04) https://www.prstatistics.com/course/stable-isotope-mixing-models-using-r- simm04/ This course will be delivered by Andrew Jackson and Andrew Parnell in QWuebc, Canada for the 28th - 31st May 2018. Course overview: This course will cover the concepts, technical background and use of stable isotope mixing models (SIMMs) with a particular focus on running them in R. This course will cover the concepts, technical background and use of stable isotope mixing models (SIMMs) with a particular focus on running them in R. Recently SIMMs have become a very popular tool for quantifying food webs and thus the diet of predators and prey in an ecosystem. Starting with only basic understanding of statistical models, we will cover the do’s and don’ts of using SIMMs with a particular focus on the widely used package SIAR and the more advanced MixSIAR. Participants will be taught some of the advanced features of these packages, which will enable them to produce a richer class of output, and are encouraged to bring their own data sets and problems to study during the round-table discussions. Email oliverhoo...@prstatistics.com Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatsistics.com (Behaviour and cognition) 1. March 19th – 23rd 2018 BEHAVIOURAL DATA ANALYSIS USING MAXIMUM LIKLIHOOD IN R (BDML01) Glasgow, Scotland, Dr William Hoppitt http://www.psstatistics.com/course/behavioural-data-analysis-using-maximum- likelihood-bdml01/ 2. April 9th – 13th 2018 NETWORK ANAYLSIS FOR ECOLOGISTS USING R (NTWA02 Glasgow, Scotland, Dr. Marco Scotti www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 3. April 16th – 20th 2018 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R (IPSY01) Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre http://www.psstatistics.com/course/introduction-to-statistics-using-r-for- psychologists-ipsy01/ 4. April 23rd – 27th 2018 MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE (VGNR01) Glasgow, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet www.prstatistics.com/course/multivariate-analysis-of-ecological-communities- in-r-with-the-vegan-package-vgnr01/ 5. April 30th – 4th May 2018 QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES (QGER01) Glasgow, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick www.prstatistics.com/course/quantitative-geographic-ecology-using-r- modelling-genomes-niches-and-communities-qger01/ 6. May 7th – 11th 2018 ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R (MVSP02) CANADA (QUEBEC), Prof. Pierre Legendre, Dr. Guillaume Blanchet www.prstatistics.com/course/advances-in-spatial-analysis-of-multivariate- ecological-data-theory-and-practice-mvsp03/ 7. May 14th - 18th 2018 INTRODUCTION TO MIXED (HIERARCHICAL) MODELS FOR BIOLOGISTS (IMBR01) CANADA (QUEBEC), Prof Subhash Lele www.prstatistics.com/course/introduction-to-mixed-hierarchical-models-for- biologists-using-r-imbr01/ 8. May 21st - 25th 2018 INTRODUCTION TO PYTHON FOR BIOLOGISTS (IPYB05) SCENE, Scotland, Dr. Martin Jones http://www.prinformatics.com/course/introduction-to-python-for-biologists- ipyb05/ 9. May 21st - 25th 2018 INTRODUCTION TO REMOTE SENISNG AND GIS FOR ECOLOGICAL APPLICATIONS (IRMS01) Glasgow, Scotland, Prof. Duccio Rocchini, Dr. Luca Delucchi www.prinformatics.com/course/introduction-to-remote-sensing-and-gis-for- ecological-applications-irms01/ 10. May 28th – 31st 2018 STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR (SIMM04) CANADA (QUEBEC) Dr. Andrew Parnell, Dr. Andrew Jackson www.prstatistics.com/course/stable-isotope-mixing-models-using-r-simm04/ 11. May 28th – June 1st 2018 ADVANCED PYTHON FOR BIOLOGISTS (APYB02) SCENE, Scotland, Dr. Martin Jones www.prinformatics.com/course/advanced-python-biologists-apyb02/ 12. June 12th - 15th 2018 SPECIES DISTRIBUTION MODELLING (DBMR01) Myuna Bay sport and recreation, Australia, Prof. Jane Elith, Dr. Gurutzeta Guillera www.prstatistics.com/course/species-distribution-models-using-r-sdmr01/ 13. June 18th – 22nd 2018 STRUCTURAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS USING R (SEMR02) Myuna Bay sport and recreation, Australia, Dr. Jon Lefcheck www.prstatistics.com/course/structural-equation-modelling-for-ecologists- and-evolutionary-biologists-semr02/ 14. June 25th – 29th 2018 SPECIES DISTRIBUTION/OCCUPANCY MODELLING USING R (OCCU01) Glasgow, Scotland, Dr. Darryl McKenzie www.prstatistics.com/course/species-distributionoccupancy-modelling-using-r- occu01/ 15. July 2nd - 5th 2018 SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R (SNAR01) Glasgow, Scotland, Prof James Curley http://www.psstatistics.com/course/social-network-analysis-for-behavioral-
[ECOLOG-L] COURSE - Phylogenetic comparative methods for studying diversification and phenotypic evolution
"Phylogenetic comparative methods for studying diversification and phenotypic evolution (PCME01)" Full details can be found at the link below. http://bit.ly/2FFjB6sPHYLOGENETIC_COMPARITIVE_METHODS_PHENOTYPIC_EVOLUTION This course will run from the 22nd - 25th October 2018 in Glasgow City Centre and will be delivered by Dr. Antigoni Kaliontzopoulou. Course Overview: Phylogenetic comparative methods are commonly used nowadays to investigate how species diversification occurs and to test hypotheses about the mechanisms that drive phenotypic evolution, e.g. to model speciation and extinction, to understand why some groups are more diverse than others, to test whether phenotypic traits have evolved under neutral, directional or diversifying selection, to investigate how evolutionary rates are modified across the evolutionary history of a group etc. In all these cases, a phylogenetic hypothesis for the group of interest is combined to phenotypic and ecological data at the species level to understand the tempo and mode of evolutionary change. The objective of this course is to provide an overview of these methods and of the tools avaipracticalsle for their implementation in the R statistical language. During theoretical sessions, we will review the main concepts and statistical tools necessary for testing hypotheses about species diversification and phenotypic evolution. These will then be implemented in practical practicals sessions through worked examples to provide the participants with hands-on experience on data management and the implementation of these methods to real biological data. Monday 22nd DAY 1: Introduction 9:00 'V 9:30: Introductions 9:30 'V 10:30: Why do we need PCMs? A short history of the field 11:00 'V 12:00: Testing for phylogenetic signal 13:00 'V 14:00: Ancestral character reconstruction 14:30 'V 17:30: PRACTICALS Tuesday 23rd DAY 2: Testing hypotheses on phenotypic evolution 9:00 'V 10:30: Phylogenetic independent contrasts and phylogenetic GLS 11:00 'V 12:30: Phylogenetically-informed ordination 14:30 'V 17:30: PRACTICALS Wednesday 24th DAY3: Tempo and mode of evolutionary change 9:00 'V 10:30: Evolutionary rates: estimation and tests 11:00 'V 12:30: Models of phenotypic evolution 14:30 'V 17:30: PRACTICALS Thursday 25th DAY 4: Miscellanea 9:00 'V 10:30: Modelling lineage diversification 11:00 'V 12:30: Future perspectives: multivariate extensions to PCMs 14:30 'V 17:30: PRACTICALS Please feel free to share this anywhere you see fit. Email oliverhoo...@prstatistics.com with any questions. Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatsistics.com (Behaviour and cognition) 1. March 19th – 23rd 2018 BEHAVIOURAL DATA ANALYSIS USING MAXIMUM LIKLIHOOD IN R (BDML01) Glasgow, Scotland, Dr William Hoppitt http://www.psstatistics.com/course/behavioural-data-analysis-using-maximum- likelihood-bdml01/ 2. April 9th – 13th 2018 NETWORK ANAYLSIS FOR ECOLOGISTS USING R (NTWA02 Glasgow, Scotland, Dr. Marco Scotti www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 3. April 16th – 20th 2018 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R (IPSY01) Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre http://www.psstatistics.com/course/introduction-to-statistics-using-r-for- psychologists-ipsy01/ 4. April 23rd – 27th 2018 MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE (VGNR01) Glasgow, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet www.prstatistics.com/course/multivariate-analysis-of-ecological-communities- in-r-with-the-vegan-package-vgnr01/ 5. April 30th – 4th May 2018 QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES (QGER01) Glasgow, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick www.prstatistics.com/course/quantitative-geographic-ecology-using-r- modelling-genomes-niches-and-communities-qger01/ 6. May 7th – 11th 2018 ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R (MVSP02) CANADA (QUEBEC), Prof. Pierre Legendre, Dr. Guillaume Blanchet www.prstatistics.com/course/advances-in-spatial-analysis-of-multivariate- ecological-data-theory-and-practice-mvsp03/ 7. May 14th - 18th 2018 INTRODUCTION TO MIXED (HIERARCHICAL) MODELS FOR BIOLOGISTS (IMBR01) CANADA (QUEBEC), Prof Subhash Lele www.prstatistics.com/course/introduction-to-mixed-hierarchical-models-for- biologists-using-r-imbr01/ 8. May 21st - 25th 2018 INTRODUCTION TO PYTHON FOR BIOLOGISTS (IPYB05) SCENE, Scotland, Dr. Martin Jones http://www.prinformatics.com/course/introduction-to-python-for-biologists- ipyb05/ 9. May 21st - 25th 2018 INTRODUCTION TO REMOTE SENISNG AND GIS FOR ECOLOGICAL APPLICATIONS (IRMS01) Glasgow, Scotland, Prof. Duccio Rocchini, Dr. Luca Delucchi www.prinformatics.com/course/introduction-to-remote-sensing-and-gis-for-
[ECOLOG-L] SCHOLARAHIPS - Network analysis for ecologists using R
PR INFORMATICS ARE PLEASED TO ANNOUNCE THAT THROUGH THEIR FUNDING SCHEME THEY CAN OFFER 5 PART-FUNDED SCHOLARSHIPS FOR OUR UP-COMING COURSE "Network analysis for ecologists using R" This course will run from the 9th - 13th April 2018 in Glasgow City Centre SCHOLARSHIPS CONTRIBUTE TOWARDS TUITION and ACCOMMODATION FEES WITH 5 PLACES 'ALL INCLUSIVE AVAILABLE AT £380.00 (Fees have been subsidised by 50% from £785.00). Includes breakfast, lunch, welcome dinner Monday evening, farewell dinner Thursday evening, refreshments and accommodation. Self-catering facilities are available in the accommodation. Accommodation is approximately a 6-minute walk from the PR statistics head office. Accommodation is multiple occupancy (max 3-4 people) single sex en-suite rooms. Arrival Sunday 8th April (after 5pm) and departure Friday 13th April (accommodation must be vacated by 9am). An additional nights accommodation can be purchased, departure 9am Saturday morning email for details. Applications should be sent to oliverhoo...@prinformatics.com and contain the following. 1. Full name 2. Institute name 3. PhD subject title or Post doc research questions 4. Do you hold a funded position 5. 150 words why this course would be relevant to your research or how it would help. Application deadline is Monday 26th March 2018 We still have ‘normal’ places available for anyone else interested. Full course details are given below https://www.prstatistics.com/course/network-analysis-for-ecologists-using-r- ntwa02/ Please feel free to share this post
[ECOLOG-L] NEW COURSE - Introduction to spatial analysis of ecological data using R (ISAE01) - Subhash Lele
-applications-irms01/ 14. May 28th – 31st 2018 STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR (SIMM04) CANADA (QUEBEC) Dr. Andrew Parnell, Dr. Andrew Jackson www.prstatistics.com/course/stable-isotope-mixing-models-using-r-simm04/ 15. May 28th – June 1st 2018 ADVANCED PYTHON FOR BIOLOGISTS (APYB02) SCENE, Scotland, Dr. Martin Jones www.prinformatics.com/course/advanced-python-biologists-apyb02/ -- 16. June 12th - 15th 2018 SPECIES DISTRIBUTION MODELLING (DBMR01) Myuna Bay sport and recreation, Australia, Prof. Jane Elith, Dr. Gurutzeta Guillera www.prstatistics.com/course/species-distribution-models-using-r-sdmr01/ 17. June 18th – 22nd 2018 STRUCTURAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS USING R (SEMR02) Myuna Bay sport and recreation, Australia, Dr. Jon Lefcheck www.prstatistics.com/course/structural-equation-modelling-for-ecologists- and-evolutionary-biologists-semr02/ 18. June 25th – 29th 2018 SPECIES DISTRIBUTION/OCCUPANCY MODELLING USING R (OCCU01) Glasgow, Scotland, Dr. Darryl McKenzie www.prstatistics.com/course/species-distributionoccupancy-modelling-using-r- occu01/ -- 19. July 2nd - 5th 2018 SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R (SNAR01) Glasgow, Scotland, Prof James Curley http://www.psstatistics.com/course/social-network-analysis-for-behavioral- scientists-snar01/ 20. July 8th – 12th 2018 MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R (MBMV02) Glasgow, Scotland, Prof David Warton www.prstatistics.com/course/model-base-multivariate-analysis-of-abundance- data-using-r-mbmv02/ 21. July 16th – 20th 2018 PRECISION MEDICINE BIOINFORMATICS: FROM RAW GENOME AND TRANSCRIPTOME DATA TO CLINICAL INTERPRETATION (PMBI01) Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith www.prinformatics.com/course/precision-medicine-bioinformatics-from-raw- genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 22. July 23rd – 27th 2018 EUKARYOTIC METABARCODING (EUKB01) Glasgow, Scotland, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ 23. October 8th – 12th 2018 Introduction to spatial analysis of ecological data using R (ISAE01) Glasgow, Scotland, Prof. Subhash Lele https://www.prstatistics.com/course/introduction-to-spatial-analysis-of- ecological-data-using-r-isae01/ -- Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] COURSE - Spatial Analysis of Multivariate Ecological data - Pierre Legendre
TATISTICAL MODELLING FOR PSYCHOLOGISTS USING R (IPSY01) Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre http://www.psstatistics.com/course/introduction-to-statistics-using-r-for- psychologists-ipsy01/ 8. April 23rd – 27th 2018 MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE (VGNR01) Glasgow, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet www.prstatistics.com/course/multivariate-analysis-of-ecological-communities- in-r-with-the-vegan-package-vgnr01/ 9. April 30th – 4th May 2018 QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES (QGER01) Glasgow, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick www.prstatistics.com/course/quantitative-geographic-ecology-using-r- modelling-genomes-niches-and-communities-qger01/ -- 10. May 7th – 11th 2018 ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R (MVSP02) CANADA (QUEBEC), Prof. Pierre Legendre, Dr. Guillaume Blanchet www.prstatistics.com/course/advances-in-spatial-analysis-of-multivariate- ecological-data-theory-and-practice-mvsp03/ 11. May 14th - 18th 2018 INTRODUCTION TO MIXED (HIERARCHICAL) MODELS FOR BIOLOGISTS (IMBR01) CANADA (QUEBEC), Prof Subhash Lele www.prstatistics.com/course/introduction-to-mixed-hierarchical-models-for- biologists-using-r-imbr01/ 12. May 21st - 25th 2018 INTRODUCTION TO PYTHON FOR BIOLOGISTS (IPYB05) SCENE, Scotland, Dr. Martin Jones http://www.prinformatics.com/course/introduction-to-python-for-biologists- ipyb05/ 13. May 21st - 25th 2018 INTRODUCTION TO REMOTE SENISNG AND GIS FOR ECOLOGICAL APPLICATIONS (IRMS01) Glasgow, Scotland, Prof. Duccio Rocchini, Dr. Luca Delucchi www.prinformatics.com/course/introduction-to-remote-sensing-and-gis-for- ecological-applications-irms01/ 14. May 28th – 31st 2018 STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR (SIMM04) CANADA (QUEBEC) Dr. Andrew Parnell, Dr. Andrew Jackson www.prstatistics.com/course/stable-isotope-mixing-models-using-r-simm04/ 15. May 28th – June 1st 2018 ADVANCED PYTHON FOR BIOLOGISTS (APYB02) SCENE, Scotland, Dr. Martin Jones www.prinformatics.com/course/advanced-python-biologists-apyb02/ -- 16. June 12th - 15th 2018 SPECIES DISTRIBUTION MODELLING (DBMR01) Myuna Bay sport and recreation, Australia, Prof. Jane Elith, Dr. Gurutzeta Guillera www.prstatistics.com/course/species-distribution-models-using-r-sdmr01/ 17. June 18th – 22nd 2018 STRUCTURAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS USING R (SEMR02) Myuna Bay sport and recreation, Australia, Dr. Jon Lefcheck www.prstatistics.com/course/structural-equation-modelling-for-ecologists- and-evolutionary-biologists-semr02/ 18. June 25th – 29th 2018 SPECIES DISTRIBUTION/OCCUPANCY MODELLING USING R (OCCU01) Glasgow, Scotland, Dr. Darryl McKenzie www.prstatistics.com/course/species-distributionoccupancy-modelling-using-r- occu01/ -- 19. July 2nd - 5th 2018 SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R (SNAR01) Glasgow, Scotland, Prof James Curley http://www.psstatistics.com/course/social-network-analysis-for-behavioral- scientists-snar01/ 20. July 8th – 12th 2018 MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R (MBMV02) Glasgow, Scotland, Prof David Warton www.prstatistics.com/course/model-base-multivariate-analysis-of-abundance- data-using-r-mbmv02/ 21. July 16th – 20th 2018 PRECISION MEDICINE BIOINFORMATICS: FROM RAW GENOME AND TRANSCRIPTOME DATA TO CLINICAL INTERPRETATION (PMBI01) Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith www.prinformatics.com/course/precision-medicine-bioinformatics-from-raw- genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 22. July 23rd – 27th 2018 EUKARYOTIC METABARCODING (EUKB01) Glasgow, Scotland, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ 23. October 8th – 12th 2018 Multivariate analysis of spatial ecological data using R (MASE02) Glasgow, Scotland, Prof. Subhash Lele https://www.prstatistics.com/course/multivariate-analysis-of-spatial- ecological-data-using-r-mase02/ Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.com/prstatistics/ twitter.com/PR
[ECOLOG-L] COURSE - Multivariate analysis of ecological communities in R with the VEGAN package (VGNR01)
cs-using-r-for- psychologists-ipsy01/ 8. April 23rd – 27th 2018 MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE (VGNR01) Glasgow, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet www.prstatistics.com/course/multivariate-analysis-of-ecological-communities- in-r-with-the-vegan-package-vgnr01/ 9. April 30th – 4th May 2018 QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES (QGER01) Glasgow, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick www.prstatistics.com/course/quantitative-geographic-ecology-using-r- modelling-genomes-niches-and-communities-qger01/ -- 10. May 7th – 11th 2018 ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R (MVSP02) CANADA (QUEBEC), Prof. Pierre Legendre, Dr. Guillaume Blanchet www.prstatistics.com/course/advances-in-spatial-analysis-of-multivariate- ecological-data-theory-and-practice-mvsp03/ 11. May 14th - 18th 2018 INTRODUCTION TO MIXED (HIERARCHICAL) MODELS FOR BIOLOGISTS (IMBR01) CANADA (QUEBEC), Prof Subhash Lele www.prstatistics.com/course/introduction-to-mixed-hierarchical-models-for- biologists-using-r-imbr01/ 12. May 21st - 25th 2018 INTRODUCTION TO PYTHON FOR BIOLOGISTS (IPYB05) SCENE, Scotland, Dr. Martin Jones http://www.prinformatics.com/course/introduction-to-python-for-biologists- ipyb05/ 13. May 21st - 25th 2018 INTRODUCTION TO REMOTE SENISNG AND GIS FOR ECOLOGICAL APPLICATIONS (IRMS01) Glasgow, Scotland, Prof. Duccio Rocchini, Dr. Luca Delucchi www.prinformatics.com/course/introduction-to-remote-sensing-and-gis-for- ecological-applications-irms01/ 14. May 28th – 31st 2018 STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR (SIMM04) CANADA (QUEBEC) Dr. Andrew Parnell, Dr. Andrew Jackson www.prstatistics.com/course/stable-isotope-mixing-models-using-r-simm04/ 15. May 28th – June 1st 2018 ADVANCED PYTHON FOR BIOLOGISTS (APYB02) SCENE, Scotland, Dr. Martin Jones www.prinformatics.com/course/advanced-python-biologists-apyb02/ -- 16. June 12th - 15th 2018 SPECIES DISTRIBUTION MODELLING (DBMR01) Myuna Bay sport and recreation, Australia, Prof. Jane Elith, Dr. Gurutzeta Guillera www.prstatistics.com/course/species-distribution-models-using-r-sdmr01/ 17. June 18th – 22nd 2018 STRUCTURAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS USING R (SEMR02) Myuna Bay sport and recreation, Australia, Dr. Jon Lefcheck www.prstatistics.com/course/structural-equation-modelling-for-ecologists- and-evolutionary-biologists-semr02/ 18. June 25th – 29th 2018 SPECIES DISTRIBUTION/OCCUPANCY MODELLING USING R (OCCU01) Glasgow, Scotland, Dr. Darryl McKenzie www.prstatistics.com/course/species-distributionoccupancy-modelling-using-r- occu01/ -- 19. July 2nd - 5th 2018 SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R (SNAR01) Glasgow, Scotland, Prof James Curley http://www.psstatistics.com/course/social-network-analysis-for-behavioral- scientists-snar01/ 20. July 8th – 12th 2018 MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R (MBMV02) Glasgow, Scotland, Prof David Warton www.prstatistics.com/course/model-base-multivariate-analysis-of-abundance- data-using-r-mbmv02/ 21. July 16th – 20th 2018 PRECISION MEDICINE BIOINFORMATICS: FROM RAW GENOME AND TRANSCRIPTOME DATA TO CLINICAL INTERPRETATION (PMBI01) Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith www.prinformatics.com/course/precision-medicine-bioinformatics-from-raw- genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 22. July 23rd – 27th 2018 EUKARYOTIC METABARCODING (EUKB01) Glasgow, Scotland, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ 23. October 8th – 12th 2018 Multivariate analysis of spatial ecological data using R (MASE02) Glasgow, Scotland, Prof. Subhash Lele https://www.prstatistics.com/course/multivariate-analysis-of-spatial- ecological-data-using-r-mase02/ Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] FINAL CALL FOR Network analysis for ecologists using R (NTWA02)
FINAL CALL FOR "Network analysis for ecologists using R (NTWA02)" Please use the link below to access the course details. http://bit.ly/2tFjRwANetwork_Analysis This course is being delivered in Glasgow City Centre from 9th - 13th April 2018 and is being delivered by Dr. Marco Scotti Course overview: The first graphical representation of a food web dates back to 1880, with the pioneering works of Lorenzo Camerano. Since then, research on ecological networks has further developed and ecology is one of the fields that contributed the most to the growth of network science. Nowadays, ecologists routinely apply network analysis with a diverse set of objectives that range from studying the stability of ecological communities to quantifying energy flows in ecosystems. The course is intended to provide the participants theoretical knowledge and practical skills for the study of food webs. First, lessons and exercises will introduce basic principles of network theory. Second, ecological examples will be focused on binary food webs, networks depicting who eats whom in ecosystems. Algorithms quantifying either global food web properties or single species features within the trophic network will be introduced. Third, we will study how the architecture of the food webs can be used to investigate robustness to biodiversity loss, thus helping to predict cascading extinction events. Fourth, ecosystem network analysis (ENA), a suite of matrix manipulation routines for the study of energy/matter circulation in ecosystems, will be presented. Then, we will apply the qualitative algorithm of loop analysis to describe how the impacts of perturbations (e.g. overfishing, species invasion and global warming) may propagate through food web structure. Finally, we will learn how to visualize food web graphs to illustrate their features in an intuitive and fancy way. Monday 9th – Classes from 09:00 to 17:00 Module 1: Introduction to graph theory and network science. Basic terminology for learning the language of networks: from nodes and links to degree distribution. Three types of mathematical graphs and their properties: random networks, small-world networks, and scale-free networks. Tuesday 10th – Classes from 09:00 to 17:00 Module 2: The use of graph theory in ecology: (1) networks representing various interactions in ecological communities (e.g., predator-prey and plant-pollinator networks); (2) networks illustrating interactions at different hierarchical levels (e.g., social networks at the population level and species dispersal in the landscape graph). Who eats whom in ecosystems and at which rate? Binary and weighted food web networks. Quantitative descriptors of food web networks (e.g., fraction of basal, intermediate and top species, connectance and link density). Wednesday 11th – Classes from 09:00 to 17:00 Module 3: The structural properties of food web networks. Biodiversity loss and food web network robustness. How to predict secondary extinctions using the information embedded in the network structure of the food webs. The relevance of bipartite networks in ecology for the description of various interaction types (e.g., plant-pollinator and plant-seed disperser relationships). Thursday 12th – Classes from 09:00 to 17:00 Module 4: Ecosystem network analysis (ENA): basic principles and algorithms. Trophic considerations: the effective trophic position of species in acyclic food webs. Finn cycling index and the amount of cycling in ecosystems. Loop analysis: basic principles and its use for modelling signed digraphs. Application of the qualitative algorithm of loop analysis to predict how food web interactions can mediate ecosystem responses to perturbations. Friday 13th – Classes from 09:00 to 16:00 Module 5: Can network analysis help to better understand possible consequences of global warming on ecological communities? Network visualization with R: how to change the layout of graphs illustrating food web interactions and bipartite networks. Email oliverhoo...@statistics.com with any questions. Check our sister sites www.PRstatistics.com (ecology and life sciences) www.PRinformatics.com (bioinformatics and data science) www.PSstatistics.com (behaviour and cognition) email oliverhoo...@prstatistics.com Upcoming courses below1. February 19th – 23rd 2018 MOVEMENT ECOLOGY (MOVE01) Margam Discovery Centre, Wales, Dr Luca Borger, Dr Ronny Wilson, Dr Jonathan Potts www.prstatistics.com/course/movement-ecology-move01/ 2. February 19th – 23rd 2018 GEOMETRIC MORPHOMETRICS USING R (GMMR01) Margam Discovery Centre, Wales, Prof. Dean Adams, Prof. Michael Collyer, Dr. Antigoni Kaliontzopoulou http://www.prstatistics.com/course/geometric-morphometrics-using-r-gmmr01/ -- 3.
[ECOLOG-L] COURSE - AUSTRALIA - Structural Equation Modelling for Ecologists and Evolutionary Biologists (SEMR02)
m/course/network-analysis-ecologists-ntwa02/ 7. April 16th �C 20th 2018 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R (IPSY01) Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre http://www.psstatistics.com/course/introduction-to-statistics-using-r-for- psychologists-ipsy01/ 8. April 23rd �C 27th 2018 MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE (VGNR01) Glasgow, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet www.prstatistics.com/course/multivariate-analysis-of-ecological-communities- in-r-with-the-vegan-package-vgnr01/ 9. April 30th �C 4th May 2018 QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES (QGER01) Glasgow, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick www.prstatistics.com/course/quantitative-geographic-ecology-using-r- modelling-genomes-niches-and-communities-qger01/ -- 10. May 7th �C 11th 2018 ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R (MVSP02) CANADA (QUEBEC), Prof. Pierre Legendre, Dr. Guillaume Blanchet www.prstatistics.com/course/advances-in-spatial-analysis-of-multivariate- ecological-data-theory-and-practice-mvsp03/ 11. May 14th - 18th 2018 INTRODUCTION TO MIXED (HIERARCHICAL) MODELS FOR BIOLOGISTS (IMBR01) CANADA (QUEBEC), Prof Subhash Lele www.prstatistics.com/course/introduction-to-mixed-hierarchical-models-for- biologists-using-r-imbr01/ 12. May 21st - 25th 2018 INTRODUCTION TO PYTHON FOR BIOLOGISTS (IPYB05) SCENE, Scotland, Dr. Martin Jones http://www.prinformatics.com/course/introduction-to-python-for-biologists- ipyb05/ 13. May 21st - 25th 2018 INTRODUCTION TO REMOTE SENISNG AND GIS FOR ECOLOGICAL APPLICATIONS (IRMS01) Glasgow, Scotland, Prof. Duccio Rocchini, Dr. Luca Delucchi www.prinformatics.com/course/introduction-to-remote-sensing-and-gis-for- ecological-applications-irms01/ 14. May 28th �C 31st 2018 STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR (SIMM04) CANADA (QUEBEC) Dr. Andrew Parnell, Dr. Andrew Jackson www.prstatistics.com/course/stable-isotope-mixing-models-using-r-simm04/ 15. May 28th �C June 1st 2018 ADVANCED PYTHON FOR BIOLOGISTS (APYB02) SCENE, Scotland, Dr. Martin Jones www.prinformatics.com/course/advanced-python-biologists-apyb02/ -- 16. June 12th - 15th 2018 SPECIES DISTRIBUTION MODELLING (DBMR01) Myuna Bay sport and recreation, Australia, Prof. Jane Elith, Dr. Gurutzeta Guillera www.prstatistics.com/course/species-distribution-models-using-r-sdmr01/ 17. June 18th �C 22nd 2018 STRUCTURAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS USING R (SEMR02) Myuna Bay sport and recreation, Australia, Dr. Jon Lefcheck www.prstatistics.com/course/structural-equation-modelling-for-ecologists- and-evolutionary-biologists-semr02/ 18. June 25th �C 29th 2018 SPECIES DISTRIBUTION/OCCUPANCY MODELLING USING R (OCCU01) Glasgow, Scotland, Dr. Darryl McKenzie www.prstatistics.com/course/species-distributionoccupancy-modelling-using-r- occu01/ -- 19. July 2nd - 5th 2018 SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R (SNAR01) Glasgow, Scotland, Prof James Curley http://www.psstatistics.com/course/social-network-analysis-for-behavioral- scientists-snar01/ 20. July 8th �C 12th 2018 MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R (MBMV02) Glasgow, Scotland, Prof David Warton www.prstatistics.com/course/model-base-multivariate-analysis-of-abundance- data-using-r-mbmv02/ 21. July 16th �C 20th 2018 PRECISION MEDICINE BIOINFORMATICS: FROM RAW GENOME AND TRANSCRIPTOME DATA TO CLINICAL INTERPRETATION (PMBI01) Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith www.prinformatics.com/course/precision-medicine-bioinformatics-from-raw- genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 22. July 23rd �C 27th 2018 EUKARYOTIC METABARCODING (EUKB01) Glasgow, Scotland, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ ------ -- Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.
[ECOLOG-L] COURSE - EUKARYOTIC METABARCODING
-for-behavioral- scientists-snar01/ 20.July 8th – 12th 2018 MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R (MBMV02) Glasgow, Scotland, Prof David Warton https://www.prstatistics.com/course/model-base-multivariate-analysis-of- abundance-data-using-r-mbmv02/ 21.July 16th – 20th 2018 PRECISION MEDICINE BIOINFORMATICS: FROM RAW GENOME AND TRANSCRIPTOME DATA TO CLINICAL INTERPRETATION (PMBI01) Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith https://www.prinformatics.com/course/precision-medicine-bioinformatics-from- raw-genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 22.July 23rd – 27th 2018 EUKARYOTIC METABARCODING (EUKB01) Glasgow, Scotland, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ -- Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. +44 (0) 7966500340
[ECOLOG-L] Course - Network analysis for ecologists/biologists
BIOINFORMATICS: FROM RAW GENOME AND TRANSCRIPTOME DATA TO CLINICAL INTERPRETATION (PMBI01) Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith www.prinformatics.com/course/precision-medicine-bioinformatics-from-raw- genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 22. July 23rd – 27th 2018 EUKARYOTIC METABARCODING (EUKB01) Glasgow, Scotland, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ -- -- Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] Course - Network analysis for ecologists/biologists
Griffith, Dr. Obi Griffith https://www.prinformatics.com/course/precision-medicine-bioinformatics-from- raw-genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 22. July 23rd – 27th 2018 EUKARYOTIC METABARCODING (EUKB01) Glasgow, Scotland, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ -- Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] COURSE - Introduction to Python for biologists
-of-mul tivariate-ecological-data-theory-and-practice-mvsp03/ 11.May 14^th - 18^th 2018 INTRODUCTION TO MIXED (HIERARCHICAL) MODELS FOR BIOLOGISTS (IMBR01) CANADA (QUEBEC), Prof Subhash Lele https://www.prstatistics.com/course/introduction-to-mixed-hierarchical- models-for-biologists-using-r-imbr01/ 12.May 21^st - 25^th 2018 INTRODUCTION TO PYTHON FOR BIOLOGISTS (IPYB05) SCENE, Scotland, Dr. Martin Jones http://www.prinformatics.com/course/introduction-to-python-for-biologis ts-ipyb05/ 13.May 21^st - 25^th 2018 INTRODUCTION TO REMOTE SENISNG AND GIS FOR ECOLOGICAL APPLICATIONS (IRMS01) Glasgow, Scotland, Prof. Duccio Rocchini, Dr. Luca Delucchi https://www.prinformatics.com/course/introduction-to-remote-sensing-and -gis-for-ecological-applications-irms01/ 14.May 28^th – 31^st 2018 STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR (SIMM04) CANADA (QUEBEC) Dr. Andrew Parnell, Dr. Andrew Jackson https://www.prstatistics.com/course/stable-isotope-mixing-models-using- r-simm04/ 15.May 28^th – June 1^st 2018 ADVANCED PYTHON FOR BIOLOGISTS (APYB02) SCENE, Scotland, Dr. Martin Jones https://www.prinformatics.com/course/advanced-python-biologists-apyb02/ - 16.June 12^th -0 15^th 2018 SPECIES DISTRIBUTION MODELLING (DBMR01) Myuna Bay sport and recreation, Australia, TBC https://www.prstatistics.com/course/species-distribution-models-using-r -sdmr01/ 17.June 18^th – 22^nd 2018 STRUCTURAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS USING R (SEMR02) Myuna Bay sport and recreation, Australia, TBC https://www.prstatistics.com/course/structural-equation-modelling-for-e cologists-and-evolutionary-biologists-semr02/ - 18.July 2^nd - 5^th 2018 SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R (SNAR01) Glasgow, Scotland, Prof James Curley http://www.psstatistics.com/course/social-network-analysis-for-behavior al-scientists-snar01/ 19.July 8^th – 12^th 2018 MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R (MBMV02) Glasgow, Scotland, Prof David Warton https://www.prstatistics.com/course/model-base-multivariate-analysis-of -abundance-data-using-r-mbmv02/ 20.July 16^th – 20^th 2018 PRECISION MEDICINE BIOINFORMATICS: FROM RAW GENOME AND TRANSCRIPTOME DATA TO CLINICAL INTERPRETATION (PMBI01) Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith https://www.prinformatics.com/course/precision-medicine-bioinformatics- from-raw-genome-and-transcriptome-data-to-clinical-interpretation-pmbi0 1/ 21.July 23^rd – 27^th 2018 EUKARYOTIC METABARCODING (EUKB01) Glasgow, Scotland, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ Oliver Hooker PhD. PR informatics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. - The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. Oliver Hooker <oliverhoo...@prinformatics.com>
[ECOLOG-L] AUSTRALIA - Species distribution models using R - Jane Elith
Species distribution models using R (SDMR01) This course will run from the 12th - 15th June 2018 at Myuna Bay in Australia and is being delivered by Prof. Jane Elith and Dr. Gurutzeta Guillera Accommodation packages are available https://www.prstatistics.com/course/species-distribution-models-using-r- sdmr01/ Course Overview: The aim of this four-day course is to work towards an understanding of, and practical ability to fit, species distribution models (SDMs). It will be useful if you plan to use SDMs, or if you just want to understand them better. We will focus on statistical models of species distributions – those that combine observed species records with environmental data. Using a mixture of lectures, computer exercises and case studies, participants will learn to: 1) identify relevant data, and prepare it for modelling; 2) fit models using several modelling methods (including Maxent, generalized linear models and their extensions, and boosted regression trees); 3) consider how to model species if detection is imperfect; 4) evaluate models and interpret them; 5) understand the range of practical issues that arise in typical applications of SDMs. Practical sessions will use the free statistical software, R – prior experience (even if some practice before you come) will be useful. Example data will be provided but participants may also bring their own data. Tuesday 12th Overview of modelling distributions; niches and theory The modelling process – key concepts Predictor variables Species data Practical: start working with supplied data Methods for presence-absence data; introduction to use of regression models for species modelling Wednesday 13th Generalised linear models (GLMs) and GLMMS Practical: using GLMs with data How to evaluate models – lecture and practical Occupancy-detection models – lecture and practical Thursday 14th What if no absence data? – introduction to presence-only and background data Practical: GLM with background data Relative probabilities, point processes Maxent – lecture and practical Evaluation for presence-background models How to deal with biased data Friday 15th Boosted regression trees – lecture and practical Complexity vs simplicity in models Using models for extrapolation Hot topics: where is species modelling heading? Please email any questions to oliverhoo...@prstatistics.com Please feel free to share this anywhere you see fit Other up-coming courses include -- 1. February 19th – 23rd 2018 MOVEMENT ECOLOGY (MOVE01) Margam Discovery Centre, Wales, Dr Luca Borger, Dr Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move01/ 2. February 19th – 23rd 2018 GEOMETRIC MORPHOMETRICS USING R (GMMR01) Margam Discovery Centre, Wales, Prof. Dean Adams, Prof. Michael Collyer, Dr. Antigoni Kaliontzopoulou http://www.prstatistics.com/course/geometric-morphometrics-using-r-gmmr01/ -- 3. March 5th - 9th 2018 SPATIAL PRIORITIZATION USING MARXAN (MRXN01) Margam Discovery Centre, Wales, Jennifer McGowan https://www.prstatistics.com/course/introduction-to-marxan-mrxn01/ 4. March 12th - 16th 2018 ECOLOGICAL NICHE MODELLING USING R (ENMR02) Glasgow, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr02/ 5. March 19th – 23rd 2018 BEHAVIOURAL DATA ANALYSIS USING MAXIMUM LIKLIHOOD IN R (BDML01) Glasgow, Scotland, Dr William Hoppitt http://www.psstatistics.com/course/behavioural-data-analysis-using-maximum- likelihood-bdml01/ -- 6. April 9th – 13th 2018 NETWORK ANAYLSIS FOR ECOLOGISTS USING R (NTWA02 Glasgow, Scotland, Dr. Marco Scotti https://www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 7. April 16th – 20th 2018 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R (IPSY01) Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre http://www.psstatistics.com/course/introduction-to-statistics-using-r-for- psychologists-ipsy01/ 8. April 23rd – 27th 2018 MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE (VGNR01) Glasgow, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet https://www.prstatistics.com/course/multivariate-analysis-of-ecological- communities-in-r-with-the-vegan-package-vgnr01/ 9. April 30th – 4th May 2018 QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES (QGER01) Glasgow, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick
[ECOLOG-L] Movement ecology (MOVE01) - 2 places due to cancellations
We have two places on the course "Movement ecology (MOVE01)". This course was full but we have had openings due to 2 cancellations. This course will run from the 19th - 23rd February 2018 in Wales and will be delivered by Prof. Luca Borger, Prof. Rory Wilson, Dr. Jonathan Potts Full details can be found at https://www.prstatistics.com/course/movement-ecology-move01/ Course Overview: The course will cover the concepts, technology and software tools that can be used to analyse movement data (from ringing/CMR to VHF/GPS to novel biologging data) in ecology and evolution, covering analysis techniques applicable broadly to most taxa, from micro-organisms to plants and animals. We will cover elementary and advanced analysis and modelling techniques broadly applicable across taxa, highlighting the advantages of a unified Movement Ecology framework. We will provide the necessary bases in ecology (especially behavioural ecology), physics and mathematics/statistics, to be able to identify for any specific research question the most appropriate study species, logging technology (incl. attachment methods), and statistical/mathematical modelling approach. We will specifically address the challenges and opportunities at each of the steps of the proposed ‘question-driven approach’, combining hands-on sessions with new biologging technology with computer-based practicals in R and specialized software for biologging data developed by the SLAM lab at Swansea University. We will also address the challenges of applying the results of the analyses to applied management problems and communicate the findings to non-experts. If you have any questions please email oliverhoo...@prstatistics.com
[ECOLOG-L] CANADA - Spatial Analysis of Multivariate Ecological Data - Piere Legendre
Advances in Spatial Analysis of Multivariate Ecological Data: Theory and Practice (MVSP03) https://www.prstatistics.com/course/advances-in-spatial-analysis-of- multivariate-ecological-data-theory-and-practice-mvsp03/ This course will be delivered by Prof. Pierre Legendre and Dr. Guillaume Blanchet from the 7-11th May 2018 in Quebec, Canada. Course Overview: The course will describe recent methods (concepts and R tools) that can be used to analyse spatial patterns in community ecology. The umbrella concept of the course is beta diversity, which is the spatial variation of communities. These methods are applicable to all types of communities (bacteria, plants, animals) sampled along transects, regular grids or irregularly distributed sites. The new methods, collectively referred to as spatial eigen-function analysis, are grounded into techniques commonly used by community ecologists, which will be described first: simple ordination (PCA, CA, PCoA), multivariate regression and canonical analysis, permutation tests. The choice of dissimilarities that are appropriate for community composition data will also be discussed. The focal question is to determine how much of the community variation (beta diversity) is due to environmental sorting and to community-based processes, including neutral processes. Recently developed methods to partition beta diversity in different ways will be presented. Extensions will be made to temporal and space-time data. Monday 7th Introduction to data analysis. Ordination in reduced space: principal component analysis (PCA), correspondence analysis (CA), principal coordinate analysis (PCoA). Transformation of species abundance data tables prior to linear analyses. Tuesday 8th Measures of similarity and distance, especially for community composition data. Multiple linear regression. R-square, adjusted R-square, AIC, tests of significance. Polynomial regression. Partial regression and variation partitioning. Wednesday 9th Statistical testing by permutation. Canonical redundancy analysis (RDA) and canonical correspondence analysis (CCA). Multivariate analysis of variance by canonical analysis. Forward selection of environmental variables in RDA. Thursday 10th Origin of spatial structures. Beta diversity partitioning and LCBD indices Replacement and richness difference components of beta diversity. Friday 11th Spatial modelling: Multi-scale modelling of the spatial structure of ecological communities: dbMEM, generalized MEM, and AEM methods. Community surveys through space and time: testing the space-time interaction in repeated surveys. Additional module depending on time – Is the Mantel test useful for spatial analysis in ecology and genetics? Please email any questions to oliverhoo...@prstatistics.com Other up-coming courses include -- 1. February 19th – 23rd 2018 MOVEMENT ECOLOGY (MOVE01) Margam Discovery Centre, Wales, Dr Luca Borger, Dr Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move01/ 2. February 19th – 23rd 2018 GEOMETRIC MORPHOMETRICS USING R (GMMR01) Margam Discovery Centre, Wales, Prof. Dean Adams, Prof. Michael Collyer, Dr. Antigoni Kaliontzopoulou http://www.prstatistics.com/course/geometric-morphometrics-using-r-gmmr01/ -- 3. March 5th - 9th 2018 SPATIAL PRIORITIZATION USING MARXAN (MRXN01) Margam Discovery Centre, Wales, Jennifer McGowan https://www.prstatistics.com/course/introduction-to-marxan-mrxn01/ 4. March 12th - 16th 2018 ECOLOGICAL NICHE MODELLING USING R (ENMR02) Glasgow, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr02/ 5. March 19th – 23rd 2018 BEHAVIOURAL DATA ANALYSIS USING MAXIMUM LIKLIHOOD IN R (BDML01) Glasgow, Scotland, Dr William Hoppitt http://www.psstatistics.com/course/behavioural-data-analysis-using-maximum- likelihood-bdml01/ -- 6. April 9th – 13th 2018 NETWORK ANAYLSIS FOR ECOLOGISTS USING R (NTWA02 Glasgow, Scotland, Dr. Marco Scotti https://www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 7. April 16th – 20th 2018 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R (IPSY01) Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre http://www.psstatistics.com/course/introduction-to-statistics-using-r-for- psychologists-ipsy01/ 8. April 23rd – 27th 2018 MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE (VGNR01)
[ECOLOG-L] Introduction to remote sensing and GIS for ecological applications
Introduction to remote sensing and GIS for ecological applications (IRMS01) https://www.prinformatics.com/course/introduction-to-remote-sensing-and-gis- for-ecological-applications-irms01/ This course will be delivered by Prof. Duccio Rocchini and Dr. Luca Delucchi from the 21st – 25th May 2018 in Glasgow City Centre. This course is aimed at anyone using remote sense (RS) data, for example those in the field of landscape genetics/genomics and will give a full overview of RS from an introductory level. Course Overview: The course will deal with different aspects related to the use of remote sensing and GIS in spatial ecology by using the Free and Open Source Software GRASS GIS coupled with R. By the end of this 5-day practical course, attendees will have the capacity to deal with ecological patterns and processes by using GIS and remote sensing algorithms. The increasing availability of open ecological and geographical data through networks such as the Global Biodiversity Information Facility (GBIF, http://www.gbif.org) or the Data Observation Network for Earth (DataONE) federated data archive (http://www.dataone.org) makes it increasingly possible to test cutting- edge ecological theories. In using a shared open-source code for testing these ecological theories, researchers can be sure that their results are reliable and also that the code they have used is robust. Attendees will be able to process spatial and ecological data by free and open source algorithms. The course will be mainly practical, but grounded on robust theory. All the analyses will be performed in GRASS GIS and the code will be shared with attendees. Full details can be found at https://www.prinformatics.com/course/introduction-to-remote-sensing-and-gis- for-ecological-applications-irms01/ Please feel free to share this anywhere you see fit Please email question to oliverhoo...@prinformastics.com Other up-coming courses include 1. February 19th – 23rd 2018 MOVEMENT ECOLOGY (MOVE01) Margam Discovery Centre, Wales, Dr Luca Borger, Dr Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move01/ 2. February 19th – 23rd 2018 GEOMETRIC MORPHOMETRICS USING R (GMMR01) Margam Discovery Centre, Wales, Prof. Dean Adams, Prof. Michael Collyer, Dr. Antigoni Kaliontzopoulou http://www.prstatistics.com/course/geometric-morphometrics-using-r-gmmr01/ -- 3. March 5th - 9th 2018 SPATIAL PRIORITIZATION USING MARXAN (MRXN01) Margam Discovery Centre, Wales, Jennifer McGowan https://www.prstatistics.com/course/introduction-to-marxan-mrxn01/ 4. March 12th - 16th 2018 ECOLOGICAL NICHE MODELLING USING R (ENMR02) Glasgow, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr02/ 5. March 19th – 23rd 2018 BEHAVIOURAL DATA ANALYSIS USING MAXIMUM LIKLIHOOD IN R (BDML01) Glasgow, Scotland, Dr William Hoppitt http://www.psstatistics.com/course/behavioural-data-analysis-using-maximum- likelihood-bdml01/ -- 6. April 9th – 13th 2018 NETWORK ANAYLSIS FOR ECOLOGISTS USING R (NTWA02 Glasgow, Scotland, Dr. Marco Scotti https://www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 7. April 16th – 20th 2018 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R (IPSY01) Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre http://www.psstatistics.com/course/introduction-to-statistics-using-r-for- psychologists-ipsy01/ 8. April 23rd – 27th 2018 MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE (VGNR01) Glasgow, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet https://www.prstatistics.com/course/multivariate-analysis-of-ecological- communities-in-r-with-the-vegan-package-vgnr01/ 9. April 30th – 4th May 2018 QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES (QGER01) Glasgow, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick https://www.prstatistics.com/course/quantitative-geographic-ecology-using-r- modelling-genomes-niches-and-communities-qger01/ -- 10. May 7th – 11th 2018 ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R (MVSP02) CANADA (QUEBEC), Prof. Pierre Legendre, Dr. Guillaume Blanchet https://www.prstatistics.com/course/advances-in-spatial-analysis-of- multivariate-ecological-data-theory-and-practice-mvsp03/ 11. May 14th - 18th 2018 INTRODUCTION TO MIXED (HIERARCHICAL) MODELS FOR BIOLOGISTS (IMBR01)
[ECOLOG-L] FINAL CALL - last few places available for Spatial Prioritization with Marxan (MRXN01)
Spatial Prioritization with Marxan (MRXN01) FINAL CALL - LAST FEW PLACES AVAILABLE Full details can be found using this link https://www.prstatistics.com/course/introduction-to-marxan-mrxn01/ This course will run from 5th - 9th March 2018 in Glasgow and is delivered by Jennifer McGowan, one of the Marxan developers. Course Overview: Marxan (Ian Ball and Hugh Possingham, 2000) is a software program used to support the design of marine and terrestrial reserves. Marxan is now used by over 6000 people in 150 countries, making it the most the most widely used conservation planning tool in the world. In simple terms, Marxan analyzes scientific and geographic data to help users allocate space in ways that maximize values such as biodiversity, land value, cultural significance, and economic productivity whilst minimizing cost. This hands- on course will provide participants with the basic knowledge and skills necessary to use Marxan in a conservation planning exercise. The following topics will be covered in the course: 1) Key concepts in systematic conservation planning 2) Problem definition 3) Creation of planning units and using geospatial data 4) Creating the essential Marxan input files 5)Parameter setting in Marxan 6) Understanding and interpreting Marxan results 7) Post-hoc evaluation and performance metrics 8) Advanced topics: Introduction to Marxan with Zones, Marxan with Connectivity, and Marxan with Probability Course only and accommodation packages are available please email oliverhoo...@prstatistics.com with any questions. Please check out the courses on our sister sites www.PRstatistics.com (ecology & life sciences) www.PRinformatics.com (bioinformatics & computer sciences) www.PSstatistics.com (psychology, behaviour & cognition) Other upcoming courses listed below -- 1. January 29th – February 2nd 2018 INTRODUCTION TO BAYESIAN HIERARCHICAL MODELLING (IBHM02) SCENE, Scotland, Dr. Andrew Parnell http://www.prstatistics.com/course/introduction-to-bayesian-hierarchical- modelling-using-r-ibhm02/ 2. January 29th – February 2nd 2018 PHYLOGENETIC DATA ANALYSIS USING R (PHYL02) SCENE, Scotland, Dr. Emmanuel Paradis https://www.prstatistics.com/course/introduction-to-phylogenetic-analysis- with-r-phyg-phyl02/ -- 3. February 19th – 23rd 2018 MOVEMENT ECOLOGY (MOVE01) Margam Discovery Centre, Wales, Dr Luca Borger, Dr Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move01/ 4. February 19th – 23rd 2018 GEOMETRIC MORPHOMETRICS USING R (GMMR01) Margam Discovery Centre, Wales, Prof. Dean Adams, Prof. Michael Collyer, Dr. Antigoni Kaliontzopoulou http://www.prstatistics.com/course/geometric-morphometrics-using-r-gmmr01/ -- 5. March 5th - 9th 2018 SPATIAL PRIORITIZATION USING MARXAN (MRXN01) Margam Discovery Centre, Wales, Jennifer McGowan https://www.prstatistics.com/course/introduction-to-marxan-mrxn01/ 6. March 12th - 16th 2018 ECOLOGICAL NICHE MODELLING USING R (ENMR02) Glasgow, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr02/ 7. March 19th – 23rd 2018 BEHAVIOURAL DATA ANALYSIS USING MAXIMUM LIKLIHOOD IN R (BDML01) Glasgow, Scotland, Dr William Hoppitt http://www.psstatistics.com/course/behavioural-data-analysis-using-maximum- likelihood-bdml01/ -- 8. April 9th – 13th 2018 NETWORK ANAYLSIS FOR ECOLOGISTS USING R (NTWA02 Glasgow, Scotland, Dr. Marco Scotti https://www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 9. April 16th – 20th 2018 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R (IPSY01) Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre http://www.psstatistics.com/course/introduction-to-statistics-using-r-for- psychologists-ipsy01/ 10. April 23rd – 27th 2018 MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE (VGNR01) Glasgow, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet https://www.prstatistics.com/course/multivariate-analysis-of-ecological- communities-in-r-with-the-vegan-package-vgnr01/ 11. April 30th – 4th May 2018 QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES (QGER01) Glasgow, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick
[ECOLOG-L] Part funded scholarships for Geometric morphometrics using R (D. Adams, M Collyer, A. Kaliontzopoulou)
ionary-biologists-semr02/ -- 20. July 2nd - 5th 2018 SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R (SNAR01) Glasgow, Scotland, Prof James Curley http://www.psstatistics.com/course/social-network-analysis-for-behavioral- scientists-snar01/ 21. July 8th – 12th 2018 MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R (MBMV02) Glasgow, Scotland, Prof David Warton https://www.prstatistics.com/course/model-base-multivariate-analysis-of- abundance-data-using-r-mbmv02/ 22. July 16th – 20th 2018 PRECISION MEDICINE BIOINFORMATICS: FROM RAW GENOME AND TRANSCRIPTOME DATA TO CLINICAL INTERPRETATION (PMBI01) Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith https://www.prinformatics.com/course/precision-medicine-bioinformatics-from- raw-genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 23. July 23rd – 27th 2018 EUKARYOTIC METABARCODING (EUKB01) Glasgow, Scotland, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ -- Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340 -- Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] Ecological Niche Modelling using R
-- 21. July 2nd - 5th 2018 SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R (SNAR01) Glasgow, Scotland, Prof James Curley http://www.psstatistics.com/course/social-network-analysis-for-behavioral- scientists-snar01/ 22. July 8th – 12th 2018 MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R (MBMV02) Glasgow, Scotland, Prof David Warton https://www.prstatistics.com/course/model-base-multivariate-analysis-of- abundance-data-using-r-mbmv02/ 23. July 16th – 20th 2018 PRECISION MEDICINE BIOINFORMATICS: FROM RAW GENOME AND TRANSCRIPTOME DATA TO CLINICAL INTERPRETATION (PMBI01) Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith https://www.prinformatics.com/course/precision-medicine-bioinformatics-from- raw-genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 24. July 23rd – 27th 2018 EUKARYOTIC METABARCODING (EUKB01) Glasgow, Scotland, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ -- Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] COURSE ON MARXAN (Spatial Prioritization with MARXAN)
Spatial Prioritization with MARXAN (MRXN01) Scotland, 5th – 9th March 2018 This course will be delivered by Jennifer McGowan part of the MARXAN development team Course overview: Marxan (Ian Ball and Hugh Possingham, 2000) is a software program used to support the design of marine and terrestrial reserves. Marxan is now used by over 6000 people in 150 countries, making it the most the most widely used conservation planning tool in the world. In simple terms, Marxan analyzes scientific and geographic data to help users allocate space in ways that maximize values such as biodiversity, land value, cultural significance, and economic productivity whilst minimizing cost. This hands- on course will provide participants with the basic knowledge and skills necessary to use Marxan in a conservation planning exercise. The following topics will be covered in the course: • Key concepts in systematic conservation planning • Problem definition • Creation of planning units and using geospatial data • Creating the essential Marxan input files • Parameter setting in Marxan • Understanding and interpreting Marxan results • Post-hoc evaluation and performance metrics • Advanced topics: Introduction to Marxan with Zones, Marxan with Connectivity, and Marxan with Probability Full details can be found using this link https://www.prstatistics.com/course/introduction-to-marxan-mrxn01/ If you have any questions, please feel free to email oliverhoo...@prstatistics.com Please feel free to share this information anywhere you see fit and apologies for any cross posting. Other up-coming courses -- 1. January 29t – February 2nd 2018 INTRODUCTION TO BAYESIAN HIERARCHICAL MODELLING (IBHM02) SCENE, Scotland, Dr. Andrew Parnell http://www.prstatistics.com/course/introduction-to-bayesian-hierarchical- modelling-using-r-ibhm02/ 2. January 29th – February 2nd 2018 PHYLOGENETIC DATA ANALYSIS USING R (PHYL02) SCENE, Scotland, Dr. Emmanuel Paradis https://www.prstatistics.com/course/introduction-to-phylogenetic-analysis- with-r-phyg-phyl02/ -- 3. February 19th – 23rd 2018 MOVEMENT ECOLOGY (MOVE01) Margam Discovery Centre, Wales, Dr Luca Borger, Dr Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move01/ 4. February 19th – 23rd 2018 GEOMETRIC MORPHOMETRICS USING R (GMMR01) Margam Discovery Centre, Wales, Prof. Dean Adams, Prof. Michael Collyer, Dr. Antigoni Kaliontzopoulou http://www.prstatistics.com/course/geometric-morphometrics-using-r-gmmr01/ -- 5. March 5th - 9th 2018 SPATIAL PRIORITIZATION USING MARXAN (MRXN01) Margam Discovery Centre, Wales, Jennifer McGowan https://www.prstatistics.com/course/introduction-to-marxan-mrxn01/ 6. March 12th - 16th 2018 ECOLOGICAL NICHE MODELLING USING R (ENMR02) Glasgow, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr02/ 7. March 19th – 23rd 2018 BEHAVIOURAL DATA ANALYSIS USING MAXIMUM LIKLIHOOD IN R (BDML01) Glasgow, Scotland, Dr William Hoppitt http://www.psstatistics.com/course/behavioural-data-analysis-using-maximum- likelihood-bdml01/ -- 8. April 9th – 13th 2018 NETWORK ANAYLSIS FOR ECOLOGISTS USING R (NTWA02 Glasgow, Scotland, Dr. Marco Scotti https://www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 9. April 16th – 20th 2018 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R (IPSY01) Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre http://www.psstatistics.com/course/introduction-to-statistics-using-r-for- psychologists-ipsy01/ 10. April 23rd – 27th 2018 MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE (VGNR01) Glasgow, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet https://www.prstatistics.com/course/multivariate-analysis-of-ecological- communities-in-r-with-the-vegan-package-vgnr01/ 11. April 30th – 4th May 2018 QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES (QGER01) Glasgow, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick https://www.prstatistics.com/course/quantitative-geographic-ecology-using-r- modelling-genomes-niches-and-communities-qger01/
[ECOLOG-L] Precision Medicine Bioinformatics
http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ -- Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] Course on Social Network Analysis for Behavioural Scientists
Social Network Analysis for Behavioural Scientists using R (SNAR01) https://www.psstatistics.com/course/social-network-analysis-for-behavioral- scientists-snar01/ Delivered by Prof. James Curley 3rd July 2018 - 6th July 2018 Please feel free to share this anywhere you feel is suitable. Course Overview: This workshop will provide students with the opportunity to learn how to use social network analysis to analyze social relational datasets such as human friendship networks or animal social networks. Attendees will learn how to use R and several R packages including igraph, sna, network, asnipe, timeordered, tsna to create network graphs, calculate descriptive network metrics, use randomization and random models to evaluate the significance of these metrics, determine graph structural properties including community structures, use QAP and MRQAP methods to assess how network characteristics relate to other individual and relational attributes, and measure change over time in dynamic networks. Attendees will also learn how to produce high quality network visualizations using R. Monday 2nd – Classes from 09:00 to 17:00 Elementary concepts. Module 1: Introduction to Social Networks Theory. This will cover central themes of social network analysis: the major data formats, structures and collection methods, the different types of graphs and networks; how to generate and visualize social networks and generate basic descriptive statistics, and what hypotheses and questions can be addressed using social network analysis. We will also discuss data types and questions of interest to attendees. Module 2: R refresher and R packages. This module will provide a quick overview of the major packages used for social network analysis in R including ‘igraph’, ‘sna’, ‘network’. We shall learn how to convert raw data formats to network objects in R; how to interface with R network objects and how to create simple network visualizations. Module 3: Intro to Visualizing Networks. We shall cover how to generate and beautify networks using the ‘igraph’ R package covering issues such as layout decisions, coloring and sizing of nodes and edges by network attributes, metrics or community. We shall extend this to cover how to create dynamic three-dimentional network plots using the R package ‘threejs’. We shall also discuss how to use the ‘ggplot’ based ‘ggraph’ R package which has many customizable features for plotting networks. Tuesday 3rd – Classes from 09:00 to 17:00 Basic analyses. Module 4: Identifying important nodes and edges. Learn how to evaluate key indicators of each node’s significance to the network including, degree centrality, eigenvector centrality, power centrality, and betweenness. Describe how to calculate for directed vs. undirected and weighted vs unweighted networks. Learn how to assess simple relationships between nodes including geodesic distances, identifying neighbors, determining shortest and longest paths. Module 5: Introduction to Network Randomization and Random Models. It is critical in network analysis to evaluate how likely it is to observe a given network metric for our network of interest. This module will introduce how to use null models (randomizations/permutations or random graphs) to test whether networks have characteristics that are especially surprising after accounting for non-independence. We also will learn how to generate confidence intervals for network metrics and carry out significance testing. We shall learn how to use the ‘igraph’ package for random graph generation. Module 6: Network Graph Characteristics. We shall cover concepts such as dyad and triad censuses, transitivity, assortativity, homophily, reciprocity, clustering and density. We shall discuss their significance and importance for answering relevant questions to the patterns of social associations and behavior in networks. Wednesday 4th – Classes from 09:00 to 17:00 Extending Network Analysis. Module 7: Community Detection. Overview of what communities (modules) mean for animal and human social networks – that a high proportion of nodes or edge weights cluster within a sub-group of nodes/edges rather than between sub-groups. We shall review the numerous community detection methods and describe the implementation of major ones in R. How to generate robustness in evaluation of community detection. How to to determine the degree of community structure in a network using the index of modularity (Q) and bootstrapping techniques such as community assortativity (rcom). Hierarchical clustering for analysis of hierarchically organized social societies. Module 8: Randomizations and Random models II. This module will further explore how to determine the appropriate choice of null models for behavioral data. This is not always a trivial exercise for behavioral datasets. We will use the ‘asnipe’ R package for network permutation and ‘igraph’ R package for null
[ECOLOG-L] PhylogeneticDataAnalysisInR. 28Jan-2Feb.Paradis.FINALCALL
8. March 5th - 9th 2018 SPATIAL PRIORITIZATION USING MARXAN #MRXN Margam Discovery Centre, Wales, Jennifer McGowan https://www.prstatistics.com/course/introduction-to-marxan-mrxn01/ 9. March 12th - 16th 2018 ECOLOGICAL NICHE MODELLING USING R #ENMR Glasgow, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr02/ 10. March 19th – 23rd 2018 BEHAVIOURAL DATA ANALYSIS USING MAXIMUM LIKLIHOOD IN R #BDML Glasgow, Scotland, Dr William Hoppitt http://www.psstatistics.com/course/behavioural-data-analysis-using-maximum- likelihood-bdml01/ - 11. April 9th – 13th 2018 NETWORK ANAYLSIS FOR ECOLOGISTS USING R #NTWA Glasgow, Scotland, Dr. Marco Scotti https://www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 12. April 16th – 20th 2018 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R #IPSY Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre http://www.psstatistics.com/course/introduction-to-statistics-using-r-for- psychologists-ipsy01/ 13. April 23rd – 27th 2018 MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE #VGNR Glasgow, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet https://www.prstatistics.com/course/multivariate-analysis-of-ecological- communities-in-r-with-the-vegan-package-vgnr01/ 14. April 30th – 4th May 2018 QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES #QGER Glasgow, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick https://www.prstatistics.com/course/quantitative-geographic-ecology-using-r- modelling-genomes-niches-and-communities-qger01/ - 15. May 7th – 11th 2018 ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R #MVSP CANADA (QUEBEC), Prof. Pierre Legendre, Dr. Guillaume Blanchet https://www.prstatistics.com/course/advances-in-spatial-analysis-of- multivariate-ecological-data-theory-and-practice-mvsp03/ 16. May 14th - 18th 2018 INTRODUCTION TO MIXED (HIERARCHICAL) MODELS FOR BIOLOGISTS #IMBR CANADA (QUEBEC), Prof Subhash Lele https://www.prstatistics.com/course/introduction-to-mixed-hierarchical- models-for-biologists-using-r-imbr01/ 17. May 21st - 25th 2018 INTRODUCTION TO PYTHON FOR BIOLOGISTS #IPYB SCENE, Scotland, Dr. Martin Jones http://www.prinformatics.com/course/introduction-to-python-for-biologists- ipyb05/ 18. May 21st - 25th 2018 INTRODUCTION TO REMOTE SENISNG AND GIS FOR ECOLOGICAL APPLICATIONS Glasgow, Scotland, Prof. Duccio Rocchini, Dr. Luca Delucchi https://www.prinformatics.com/course/introduction-to-remote-sensing-and-gis- for-ecological-applications-irms01/ 19. May 28th – 31st 2018 STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR #SIMM CANADA (QUEBEC) Dr. Andrew Parnell, Dr. Andrew Jackson https://www.prstatistics.com/course/stable-isotope-mixing-models-using-r- simm04/ 20. May 28th – June 1st 2018 ADVANCED PYTHON FOR BIOLOGISTS #APYB SCENE, Scotland, Dr. Martin Jones https://www.prinformatics.com/course/advanced-python-biologists-apyb02/ - 21. June 12th -0 15th 2018 SPECIES DISTRIBUTION MODELLING #DBMR Myuna Bay sport and recreation, Australia, TBC COMING SOON www.PRstatistics.com 22. November 6th – 10th 2017 LANDSCAPE GENETIC DATA ANALYSIS USING R #LNDG Myuna Bay sport and recreation, Australia, TBC COMING SOON www.PRstatistics.com 23. June 18th – 22nd 2018 STRUCTURAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS USING R #SEMR Myuna Bay sport and recreation, Australia, TBC COMING SOON www.PRstatistics.com - 24. July 2nd - 5th 2018 SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R #SNAR Glasgow, Scotland, Prof James Curley http://www.psstatistics.com/course/social-network-analysis-for-behavioral- scientists-snar01/ 25. July 8th – 12th 2018 MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R #MBMV Glasgow, Scotland, Prof David Warton https://www.prstatistics.com/course/model-base-multivariate-analysis-of- abundance-data-using-r-mbmv02/ 26. July 16th – 20th 2018 PRECISION MEDICINE BIOINFORMATICS: FROM RAW GENOME AND TRANSCRIPTOME DATA TO CLINICAL INTERPRETATION #PMBI Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith https://www.prinformatics.com/course/precision-medicine-bioinformatics-from- raw-genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/ 27. July 23rd – 27th 2018 EUKARYOTIC METABARCODING Glasgow, Scotland, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ Oliver Hooker PhD. PR statis
[ECOLOG-L] CANADA - Advances in Spatial Analysis of Multivariate Ecological Data - Pierre Legendre
Advances in Spatial Analysis of Multivariate Ecological Data: Theory and Practice Delivered by Prof. Pierre Legendre https://www.prstatistics.com/course/advances-in-spatial-analysis-of- multivariate-ecological-data-theory-and-practice-mvsp03/ This course will run from 7th - 11th May 2018 at Orford Musique, 3165 Chemin du Parc, Orford, QC J1X 7A2, Canada Course Overview: The course will describe recent methods (concepts and R tools) that can be used to analyse spatial patterns in community ecology. The umbrella concept of the course is beta diversity, which is the spatial variation of communities. These methods are applicable to all types of communities (bacteria, plants, animals) sampled along transects, regular grids or irregularly distributed sites. The new methods, collectively referred to as spatial eigen-function analysis, are grounded into techniques commonly used by community ecologists, which will be described first: simple ordination (PCA, CA, PCoA), multivariate regression and canonical analysis, permutation tests. The choice of dissimilarities that are appropriate for community composition data will also be discussed. The focal question is to determine how much of the community variation (beta diversity) is due to environmental sorting and to community-based processes, including neutral processes. Recently developed methods to partition beta diversity in different ways will be presented. Extensions will be made to temporal and space-time data. Course content is as follows Monday 7th – Classes from 09:00 to 17:00 Introduction to data analysis. Ordination in reduced space: principal component analysis (PCA), correspondence analysis (CA), principal coordinate analysis (PCoA). Transformation of species abundance data tables prior to linear analyses. Tuesday 8th – Classes from 09:00 to 17:00 Measures of similarity and distance, especially for community composition data. Multiple linear regression. R-square, adjusted R-square, AIC, tests of significance. Polynomial regression. Partial regression and variation partitioning. Wednesday 9th – Classes from 09:00 to 17:00 Statistical testing by permutation. Canonical redundancy analysis (RDA) and canonical correspondence analysis (CCA). Multivariate analysis of variance by canonical analysis. Forward selection of environmental variables in RDA. Thursday 10th – Classes from 09:00 to 17:00 Origin of spatial structures. Beta diversity partitioning and LCBD indices Replacement and richness difference components of beta diversity. Friday 11th – Classes from 09:00 to 16:00 Spatial modelling: Multi-scale modelling of the spatial structure of ecological communities: dbMEM, generalized MEM, and AEM methods. Community surveys through space and time: testing the space-time interaction in repeated surveys. Additional module depending on time – Is the Mantel test useful for spatial analysis in ecology and genetics? Please email any inquiries to oliverhoo...@prstatistics.com or visit our website www.prstatistics.com Please feel free to distribute this material anywhere you feel is suitable PRstatistics upcoming courses - email for details oliverhoo...@prstatistics.com for details 1. November 20th - 25th 2017 APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS #ABME SCENE, Scotland, Dr. Matt Denwood http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists- epidemiologists-abme03/ 2. November 27th – December 1st 2017 INTRODUCTION TO PYTHON FOR BIOLOGISTS #IPYB Margam Discovery Centre, Wales, Dr. Martin Jones http://www.prinformatics.com/course/introduction-to-python-for-biologists- ipyb04/ - 3. December 4th - 8th 2017 ADVANCING IN STATISTICAL MODELLING USING R #ADVR Margam Discovery Centre, Wales, Dr. Luc Bussiere, Dr. Tom Houslay, Dr. Ane Timenes Laugen, http://www.prstatistics.com/course/advancing-statistical-modelling-using-r- advr07/ - 4. January 29th – February 2nd 2018 INTRODUCTION TO BAYESIAN HIERARCHICAL MODELLING #IBHM SCENE, Scotland, Dr. Andrew Parnell http://www.prstatistics.com/course/introduction-to-bayesian-hierarchical- modelling-using-r-ibhm02/ 5. January 29th – February 2nd 2018 PHYLOGENETIC DATA ANALYSIS USING R #PHYL SCENE, Scotland, Dr. Emmanuel Paradis https://www.prstatistics.com/course/introduction-to-phylogenetic-analysis- with-r-phyg-phyl02/ - 6. February 19th – 23rd 2018 MOVEMENT ECOLOGY #MOVE Margam Discovery Centre, Wales, Dr Luca Borger, Dr Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move01/ 7. February 19th – 23rd 2018 GEOMETRIC MORPHOMETRICS USING R #GMMR Margam
[ECOLOG-L] COURSE Quantitative geographic ecology using R: modelling genomes, niches, and communities
Quantitative geographic ecology using R: modelling genomes, niches, and communities (QGER01) https://www.prstatistics.com/course/quantitative-geographic-ecology-using-r- modelling-genomes-niches-and-communities-qger01/ 30th April 2018 - 4th May 2018 Dr. Dan Warren and Dr. Matt Fitzpatrick Course Overview: Spatial modelling is increasingly being used in ecology and evolutionary biology for both basic and applied research questions. While emphasis traditionally has been on species-level niche modelling, the increasing availability of genomic and community-level data has increased interest in modelling biodiversity patterns above and below the species level. This 5-day course will provide a thorough introduction to different spatial modelling techniques for quantifying and visualizing patterns of biodiversity across scales of biological organization – from population- level genetic variation, to species ecological niches, to communities. Students will learn about theory, common data types, and statistical techniques used in these different applications. The course will include introductory lectures, guided computer coding in R, and exercises for the participants, with an emphasis on visualization and reproducible workflows. All modelling and data manipulation will be performed with R. Attendees will learn to use niche modelling algorithms including Maxent, GLM, GAM, and others, and will learn both new and existing methods for conducting comparative studies using ENMs in the new ENMTools R package. Generalized Dissimilarity Modelling (GDM) and Gradient Forest (GF) will be taught for modelling genomic and community-level data. The course is intended for intermediate R users with interest in quantitative geographical ecology. After successfully completing this course students will: 1) Understand the theory underlying ENMs and the critical assumptions necessary to the modelling process. 2) Be able to develop, evaluate, and apply ENMs both in the context of conservation-oriented studies and to study niche evolution. 3) Understand the statistical underpinnings of GDM and GF 4) Be able to develop, evaluate and apply GDM and GF for quantifying and mapping spatial genetic patterns and community-level compositional variation 5) Assess population- and community-level vulnerability to climate change Monday 30th Organisation and Introductions. Spatial data in R. Point data, vector data, and raster data. GBIF, the Global Biodiversity Information Facility. Interacting with Google Maps. Working with raster and vector data. Tuesday 1st Ecological vs. historical biogeography. ENM / SDM concepts and assumptions Dismo Conceptual and practical issues with ecological inferences from distribution data. Simulating species occurrence data. Wednesday 2nd Testing ecological and evolutionary hypotheses via Monte Carlo methods. ENMTools R package. Ecospat Questions of taxonomic scale. Incorporating niche conservatism into the modelling process. Thursday 3rd Introduction to community-level modeling Background on GDM and GF Review of data formats and data preparation • Community-level data • Genomic data Model fitting and testing Interpreting model results, including turnover functions Model testing / validation / variable selection Friday 4th Predictions & Applications of GDM / GF Transforming grids Visualizing spatial variation in community / genetic composition • Dissimilarity between locations • Projecting patterns under climate change Please send enquiries to oliverhoo...@prstaititcs.com Other upcoming courses 1. November 6th – 10th 2017 LANDSCAPE GENETIC DATA ANALYSIS USING R #LNDG Margam Discovery Centre, Wales, Prof. Rodney Dyer http://www.prstatistics.com/course/landscape-genetic-data-analysis-using-r- lndg02/ 2. November 20th - 25th 2017 APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS #ABME SCENE, Scotland, Dr. Matt Denwood http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists- epidemiologists-abme03/ 3. November 27th – December 1st 2017 INTRODUCTION TO PYTHON FOR BIOLOGISTS #IPYB Margam Discovery Centre, Wales, Dr. Martin Jones http://www.prinformatics.com/course/introduction-to-python-for-biologists- ipyb04/ -- 4. December 4th - 8th 2017 ADVANCING IN STATISTICAL MODELLING USING R #ADVR Margam Discovery Centre, Wales, Dr. Luc Bussiere, Dr. Tom Houslay, Dr. Ane Timenes Laugen, http://www.prstatistics.com/course/advancing-statistical-modelling-using-r- advr07/ -- 5. January 29t – February 2nd 2018 INTRODUCTION TO BAYESIAN HIERARCHICAL MODELLING #IBHM SCENE, Scotland, Dr. Andrew Parnell
[ECOLOG-L] Course on Geometric Morphometrics using R
Geometric Morphometrics Using R (GMMR01) https://www.prstatistics.com/course/geometric-morphometrics-using-r-gmmr01/ This course is being delivered by Prof. Dean Adams, Prof. Michael Collyer and Dr. Antigoni Kaliontzopoulou This course will run from 19th – 23rd February 2018 at Margam Discovery Centre, Wales, UK. The field of geometric morphometrics (GM) is concerned with the quantification and analysis of patterns of shape variation, and its covariation with other variables. Over the past several decades these approaches have become a mainstay in the field of ecology, evolutionary biology, and anthropology, and a panoply of analytical tools for addressing specific biological hypotheses concerning shape have been developed. The goal of this is to provide participants with a working knowledge of the theory of geometric morphometrics, as well as practical training in the application of these methods. The course is organized in both theoretical and practical sessions. The theoretical sessions will provide a comprehensive introduction to the methods of landmark-based geometric morphometrics, which aims at providing the participants with a solid theoretical background for understanding the procedures used in shape data analysis. Practical sessions will include worked examples, giving the participants the opportunity to gain hands-on experience in the treatment of shape data using the R package geomorph. These sessions focus on the generation of shape variables from primary landmark data, the statistical treatment of shape variation with respect to biological hypotheses, and the visualization of patterns of shape variation and of the shapes themselves for interpretation of statistical findings, using the R language for statistical programming. While practice datasets will be available, it is strongly recommended that participants come with their own datasets. Note: Because this is a geometric morphometrics workshop in R, it is required that participants have some working knowledge in R. The practical sessions of the course will focus on GM-based analyses, and not basic R user-interfacing. It is therefore strongly recommended that participants refresh their R skills prior to attending the workshop. Course Programme Sunday 5th Meet at Millport field centre at approximately 18:30. Monday 6th – Classes from 09:00 to 17:30 1: Morphometrics: History, Introduction and Data Types 2: Review of matrix algebra and multivariate statistics 3: Superimposition 4: Software demonstration and lab practicum Tuesday 7th – Classes from 09:00 to 17:30 1: Shape spaces, shape variables, PCA 2: GPA with semi-landmarks 3: Shape covariation 4: Software demonstration and lab practicum Wednesday 8th – Classes from 09:00 to 17:30 1: Phylogenetic shape variation 2: Group Differences & Trajectory Analysis 3: Allometry 4: Software demonstration and lab practicum Thursday 9th – Classes from 09:00 to 17:30 1: Assymetry 2: Missing Data 3: Integration and Modularity 4: Disparity 5: Software demonstration and lab practicum Friday 10th – Classes from 09:00 to 16:00 1: Future Directions 2: Lab Pacticum 3: Student Presentations Please send inquiries to oliverhoo...@prstatistics.com or visit the website www.prstatistics.com Please feel free to distribute this information anywhere you think suitable Upcoming courses - email for details oliverhoo...@prstatistics.com 1. November 6th – 10th 2017 LANDSCAPE GENETIC DATA ANALYSIS USING R #LNDG Margam Discovery Centre, Wales, Prof. Rodney Dyer http://www.prstatistics.com/course/landscape-genetic-data-analysis-using-r- lndg02/ 2. November 20th - 25th 2017 APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS #ABME SCENE, Scotland, Dr. Matt Denwood http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists- epidemiologists-abme03/ 3. November 27th – December 1st 2017 INTRODUCTION TO PYTHON FOR BIOLOGISTS #IPYB Margam Discovery Centre, Wales, Dr. Martin Jones http://www.prinformatics.com/course/introduction-to-python-for-biologists- ipyb04/ -- 4. December 4th - 8th 2017 ADVANCING IN STATISTICAL MODELLING USING R #ADVR Margam Discovery Centre, Wales, Dr. Luc Bussiere, Dr. Tom Houslay, Dr. Ane Timenes Laugen, http://www.prstatistics.com/course/advancing-statistical-modelling-using-r- advr07/ -- 5. January 29t – February 2nd 2018 INTRODUCTION TO BAYESIAN HIERARCHICAL MODELLING #IBHM SCENE, Scotland, Dr. Andrew Parnell http://www.prstatistics.com/course/introduction-to-bayesian-hierarchical- modelling-using-r-ibhm02/ 6. January 29th – February 2nd 2018 PHYLOGENETIC
[ECOLOG-L] CANADA course on Mixed (Hierarchical) Models - Prof. Subhash Lele
Introduction to Mixed (Hierarchical) models for biologists using R (IMBR01) Delivered by Prof. Subhash Lele Introduction to Mixed (Hierarchical) models for biologists using R (IMBR01) This 5 day course will run from 14th - 18th May 2018 at Orford Musique, Orford, Quebec, Canada. Mixed models, also known as hierarchical models and multilevel models, is a useful class of models for many applied sciences, including biology, ecology and evolution. The goal of this course is to give a thorough introduction to the logic, theory and most importantly implementation of these models to solve practical problems in ecology. Participants are not expected to know mathematics beyond the basic algebra and calculus. Participants are expected to know some R programming and to be familiar with the linear and generalized linear regression. We will be using JAGS (Just Another Gibbs Sampler) for Markov Chain Monte Carlo (MCMC) simulations for analyzing mixed models. The course will be conducted so that participants have substantial hands-on experience. Course content is as follows Monday 14th Linear and Generalized linear models To understand mixed models, the most important rst step is to thoroughly understand the linear and generalized linear models. Also, when conducting the data analysis, it is useful to t a simpler xed eects model before trying to t a more complex mixed eects model. Hence, we will start with a very detailed review of these models. We are assuming that the participants are familiar with these models and hence we will emphasize some important, but not commonly covered, topics. This will also give us an opportunity to unify the notation, review the basic R commands and ll out any gaps in knowledge and understanding of these topics. 1. We will show the use of non-parametric exploratory techniques such as classication and regression trees (CART) for learning about important covariates and possible non-linearities in the relationships. 2. We will emphasize graphical and simulation based methods (e.g. Gelman and Hill, 2006) to understand and explore the implications of the tted model. 3. We will discuss graphical tools such as marginal and conditional plots that are useful for conveying the results of a multiple regression model to a lay person. 4. We will emphasize the use of graphical tools to conduct regression diagnostics and appropriateness of the model. 5. We will discuss the important concepts of confounding, eect modication and interaction. These are particularly important to conduct causal, not just correlational, inference using observational studies. Tuesday 15th – Classes from 09:00 to 17:00 Computational inference Many of the topics that will be covered involve the use of matrix algebra and calculus. While these mathematical techniques are essential tools for a mathematical statistician who is trying to understand the theory behind the methods, they can be avoided in practice by using simulation based techniques. The built-in functions such as the ’lm’ and ’glm’ to t the regression models use the method of maximum likelihood to estimate the parameters and conduct statistical inference. We will discuss the use of JAGS (Just Another Gibbs Sampler) and the R package ’dclone’ to t the same models. We will use a dierent statistical philosophy, namely the Bayesian inference, to t these models. We will show how the Bayesian approach can be tricked into giving frequentist answers using data cloning (Lele et al. 2007, Ecology Letters). We will also discuss the rudiments of frequentist and Bayesian inference although we will not go into the pros and cons of them at this time. That will be covered during sessions 3 and 4 of the #64257;fth day (and, over beer afterwards). 1. What makes an inference statistical inference? 2. What do we mean by probability of an event? 3. How do we quantify uncertainty in an inferential statement in the frequentist framework? 4. How do we quantify uncertainty in an inferential statement in the Bayesian framework? We will then discuss the simulation based methods to quantify uncertainty. 1. Parametric bootstrap to quantify frequentist uncertainty 2. Markov Chain Monte Carlo to quantify Bayesian uncertainty 3. Fitting LM and GLM using JAGS and Bayesian approach Wednesday 16th – Classes from 09:00 to 17:00 Linear Mixed Models Historically, linear mixed models arose in the study of quantitative genetics and heritability issues. They were successfully applied in animal breeding and led to the ’white’ revolution with abundance of milk supply for the developing world. They were, also, used in horse racing and other such fun areas. The other situation where linear mixed eects models were developed were in the context of growth curves. We will follow this historical trajectory of mixed models, paying tribute to the great statisticians R. A. Fisher, C. R. Rao and Jerzy Neyman, and study linear mixed models rst. The
[ECOLOG-L] Course on analysing behavioural data!
Behavioural data analysis using maximum likelihood in R (BDML01) https://www.psstatistics.com/course/behavioural-data-analysis-using-maximum- likelihood-bdml01/ 19th March 2018 - 23rd March 2018 SCENE, Loch Lomond, Rowardennan, , Glasgow, Scotland, G63 0AW, United Kingdom Course Overview: This 5-day course will involve a combination of lectures and practical sessions. Students will learn to build and fit custom models for analysing behavioural data using maximum likelihood techniques in R. This flexible approach allows a researcher to a) use a statistical model that directly represents their hypothesis, in cases where standard models are not appropriate and b) better understand how standard statistical models (e.g. GLMs) are fitted, many of which are fitted by maximum likelihood. Students will learn how to deal with binary, count and continuous data, including time-to-event data which is commonly encountered in behavioural analysis. After successfully completing this course students should be able to: 1) fit a multi-parameter maximum likelihood model in R 2) derive likelihood functions for binary, count and continuous data 3) deal with time-to-event data 4) build custom models to test specific behavioural hypotheses 5) conduct hypothesis tests and construct confidence intervals 6) use Akaike’s information criterion (AIC) and model averaging 7) understand how maximum likelihood relates to Bayesian techniques Monday 19th Module 1: The process of statistical inference and the role of statistical models. Why learn likelihood techniques? Course outline Module 2: Maximum likelihood estimation: single parameter models for binary data Tuesday 20th Module 3: Models with several parameters for binary data, optimization algorithms Module 4: Testing hypotheses and constructing confidence intervals Wednesday 21st Module 5: Modelling count data and the Poisson distribution Module 6: Modelling continuous data, the normal distribution and the relationship of maximum likelihood to least squares Thursday 22nd Module 7: Modelling time to event data and the exponential distribution Module 8: Akaike’s information criterion (AIC) and model averaging Friday 12th Module 9: A brief introduction to Bayesian analysis, the practical advantages, and its relationship to maximum likelihood Afternoon: Trouble shooting and final summary Please send enquiries to oliverhoo...@psstatistics.com or visit www.psstatistcs.com for more details. Other courses include 1. November 6th – 10th 2017 LANDSCAPE GENETIC DATA ANALYSIS USING R #LNDG Margam Discovery Centre, Wales, Prof. Rodney Dyer http://www.prstatistics.com/course/landscape-genetic-data-analysis-using-r- lndg02/ 2. November 20th - 25th 2017 APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS #ABME SCENE, Scotland, Dr. Matt Denwood http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists- epidemiologists-abme03/ 3. November 27th – December 1st 2017 INTRODUCTION TO PYTHON FOR BIOLOGISTS #IPYB Margam Discovery Centre, Wales, Dr. Martin Jones http://www.prinformatics.com/course/introduction-to-python-for-biologists- ipyb04/ -- 4. December 4th - 8th 2017 ADVANCING IN STATISTICAL MODELLING USING R #ADVR Margam Discovery Centre, Wales, Dr. Luc Bussiere, Dr. Tom Houslay, Dr. Ane Timenes Laugen, http://www.prstatistics.com/course/advancing-statistical-modelling-using-r- advr07/ -- 5. January 29t – February 2nd 2018 INTRODUCTION TO BAYESIAN HIERARCHICAL MODELLING #IBHM SCENE, Scotland, Dr. Andrew Parnell http://www.prstatistics.com/course/introduction-to-bayesian-hierarchical- modelling-using-r-ibhm02/ 6. January 29th – February 2nd 2018 PHYLOGENETIC DATA ANALYSIS USING R #PHYL SCENE, Scotland, Dr. Emmanuel Paradis https://www.prstatistics.com/course/introduction-to-phylogenetic-analysis- with-r-phyg-phyl02/ -- 7. February 19th – 23rd 2018 MOVEMENT ECOLOGY #MOVE Margam Discovery Centre, Wales, Dr Luca Borger, Dr Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move01/ 8. February 19th – 23rd 2018 GEOMETRIC MORPHOMETRICS USING R #GMMR Margam Discovery Centre, Wales, Prof. Dean Adams, Prof. Michael Collyer, Dr. Antigoni Kaliontzopoulou http://www.prstatistics.com/course/geometric-morphometrics-using-r-gmmr01/
[ECOLOG-L] Course on Bayesian Hierarchical/Mixed Models
/ -- 9. March 5th – 9th 2018 FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION #FEER Margam Discovery Centre, Wales, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 10. March 5th - 9th 2018 SPATIAL PRIORITIZATION USING MARXAN #MRXN Margam Discovery Centre, Wales, Jennifer McGowan https://www.prstatistics.com/course/introduction-to-marxan-mrxn01/ 11. March 12th - 16th 2018 ECOLOGICAL NICHE MODELLING USING R #ENMR Glasgow, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr02/ 12. March 19th – 23rd 2018 BEHAVIOURAL DATA ANALYSIS USING MAXIMUM LIKLIHOOD IN R #BDML Glasgow, Scotland, Dr William Hoppitt http://www.psstatistics.com/course/behavioural-data-analysis-using-maximum- likelihood-bdml01/ -- 13. April 9th – 13th 2018 NETWORK ANAYLSIS FOR ECOLOGISTS USING R #NTWA Glasgow, Scotland, Dr. Marco Scotti https://www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 14. April 16th – 20th 2018 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R #IPSY Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre http://www.psstatistics.com/course/introduction-to-statistics-using-r-for- psychologists-ipsy01/ 15. April 23rd – 27th 2018 MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE #VGNR Glasgow, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet https://www.prstatistics.com/course/multivariate-analysis-of-ecological- communities-in-r-with-the-vegan-package-vgnr01/ 16. April 30th – 4th May 2018 QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES #QGER Glasgow, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick COMING SOON www.PRstatistics.com -- 17. May 7th – 11th 2018 ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R #MVSP CANADA (QUEBEC), Prof. Pierre Legendre, Dr. Guillaume Blanchet 18. May 14th - 18th 2018 INTRODUCTION TO MIXED MODELS FOR BIOLOGISTS #IMBR CANADA (QUEBEC), Prof Subhash Lele 19. May 21st - 25th 2018 INTRODUCTION TO REMOTE SENISNG AND GIS FOR ECOLOGICAL APPLICATIONS Glasgow, Scotland, Prof. Duccio Rocchini, Dr. Luca Delucchi https://www.prinformatics.com/course/introduction-to-remote-sensing-and-gis- for-ecological-applications-irms01/ 20. May 28th – 1st June 2018 STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR #SIMM CANADA (QUEBEC) Dr. Andrew Parnell, Dr. Andrew Jackson -- 21. July 2nd - 5th 2018 SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R #SNAR Glasgow, Scotland, Prof James Curley http://www.psstatistics.com/course/social-network-analysis-for-behavioral- scientists-snar01/ 22. July 8th – 12th 2018 MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R #MBMV Glasgow, Scotland, Prof David Warton https://www.prstatistics.com/course/model-base-multivariate-analysis-of- abundance-data-using-r-mbmv02/ 23. July 16th – 20th 2018 TRANSCRIPTOME ANALYSIS, VISUALIZATION AND INTERPRETATION #TAVI Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith COMING SOON www.prinformatics.com 24. July 23rd – 27th 2018 EUKARYOTIC METABARCODING Glasgow, Scotland, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ -- -- Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] CANADA course on Stable Isotope Data Analysis Stable Isotope Mixing Models using SIAR, MixSIAR and SIBER - Andrew Jackson Andrew Parnell
/ -- 9. March 5th – 9th 2018 FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION #FEER Margam Discovery Centre, Wales, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 10. March 5th - 9th 2018 SPATIAL PRIORITIZATION USING MARXAN #MRXN Margam Discovery Centre, Wales, Jennifer McGowan https://www.prstatistics.com/course/introduction-to-marxan-mrxn01/ 11. 12th - 16th March 2018 ECOLOGICAL NICHE MODELLING USING R #ENMR Glasgow, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr02/ 12. March 19th – 23rd 2018 BEHAVIOURAL DATA ANALYSIS USING MAXIMUM LIKLIHOOD IN R #BDML Glasgow, Scotland, Dr William Hoppitt http://www.psstatistics.com/course/behavioural-data-analysis-using-maximum- likelihood-bdml01/ -- 13. April 9th – 13th 2018 NETWORK ANAYLSIS FOR ECOLOGISTS USING R #NTWA Glasgow, Scotland, Dr. Marco Scotti https://www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 14. April 16th – 20th 2018 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R #IPSY Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre http://www.psstatistics.com/course/introduction-to-statistics-using-r-for- psychologists-ipsy01/ 15. April 23rd – 27th 2018 MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE #VGNR Glasgow, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet https://www.prstatistics.com/course/multivariate-analysis-of-ecological- communities-in-r-with-the-vegan-package-vgnr01/ 16. April 30th – 4th May 2018 QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES #QGER Glasgow, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick COMING SOON www.PRstatistics.com -- 17. 7th – 11th May 2018 ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R #MVSP CANADA (QUEBEC), Prof. Pierre Legendre, Dr. Guillaume Blanchet 18. 14th - 18th May 2018 INTRODUCTION TO MIXED MODELS FOR BIOLOGISTS #IMBR CANADA (QUEBEC), Prof Subhash Lele 19. 21st - 25th May 2018 INTRODUCTION TO REMOTE SENISNG AND GIS FOR ECOLOGICAL APPLICATIONS Glasgow, Scotland, Prof. Duccio Rocchini, Dr. Luca Delucchi https://www.prinformatics.com/course/introduction-to-remote-sensing-and-gis- for-ecological-applications-irms01/ 20. 28th May – 1st June 2018 STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR #SIMM CANADA (QUEBEC) Dr. Andrew Parnell, Dr. Andrew Jackson -- 21. July 2nd - 5th 2018 SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R #SNAR Glasgow, Scotland, Prof James Curley http://www.psstatistics.com/course/social-network-analysis-for-behavioral- scientists-snar01/ 22. 8th – 12th July 2018 MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R #MBMV Glasgow, Scotland, Prof David Warton https://www.prstatistics.com/course/model-base-multivariate-analysis-of- abundance-data-using-r-mbmv02/ 23. 16th – 20th July 2018 TRANSCRIPTOME ANALYSIS, VISUALIZATION AND INTERPRETATION #TAVI Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith COMING SOON www.prinformatics.com 24. 23rd – 27th July 2018 EUKARYOTIC METABARCODING Glasgow, Scotland, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ -- Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] Repeat course on ecological niche modelling
Delucchi https://www.prinformatics.com/course/introduction-to-remote-sensing-and-gis- for-ecological-applications-irms01/ 20. 28th May – 1st June 2018 STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR #SIMM CANADA (QUEBEC) Dr. Andrew Parnell, Dr. Andrew Jackson -- 21. July 2nd - 5th 2018 SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R #SNAR Glasgow, Scotland, Prof James Curley COMING SOON www.PSstatistics.com 22. 8th – 12th July 2018 MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R #MBMV Glasgow, Scotland, Prof David Warton https://www.prstatistics.com/course/model-base-multivariate-analysis-of- abundance-data-using-r-mbmv02/ 23. 16th – 20th July 2018 TRANSCRIPTOME ANALYSIS, VISUALIZATION AND INTERPRETATION #TAVI Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith COMING SOON www.prinformatics.com 24. 23rd – 27th July 2018 EUKARYOTIC METABARCODING Glasgow, Scotland, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ -- Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] Course on functional ecology / traits
Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move01/ 8. February 19th – 23rd 2018 GEOMETRIC MORPHOMETRICS USING R #GMMR Margam Discovery Centre, Wales, Prof. Dean Adams, Prof. Michael Collyer, Dr. Antigoni Kaliontzopoulou http://www.prstatistics.com/course/geometric-morphometrics-using-r-gmmr01/ -- 9. March 5th – 9th 2018 FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION #FEER Margam Discovery Centre, Wales, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 10. March 5th - 9th 2018 SPATIAL PRIORITIZATION USING MARXAN #MRXN Margam Discovery Centre, Wales, Jennifer McGowan https://www.prstatistics.com/course/introduction-to-marxan-mrxn01/ 11. 12th - 16th March 2018 ECOLOGICAL NICHE MODELLING USING R #ENMR Glasgow, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr02/ 12. March 19th – 23rd 2018 BEHAVIOURAL DATA ANALYSIS USING MAXIMUM LIKLIHOOD IN R #BDML Glasgow, Scotland, Dr William Hoppitt COMING SOON www.PSstatistics.com -- 13. April 9th – 13th 2018 NETWORK ANAYLSIS FOR ECOLOGISTS USING R #NTWA Glasgow, Scotland, Dr. Marco Scotti https://www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 14. April 16th – 20th 2018 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R #IPSY Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre COMING SOON www.PSstatistics.com 15. April 23rd – 27th 2018 MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE #VGNR Glasgow, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet https://www.prstatistics.com/course/multivariate-analysis-of-ecological- communities-in-r-with-the-vegan-package-vgnr01/ 16. April 30th – 4th May 2018 QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES #QGER Glasgow, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick COMING SOON www.PRstatistics.com -- 17. 7th – 11th May 2018 ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R #MVSP CANADA (QUEBEC), Prof. Pierre Legendre, Dr. Guillaume Blanchet 18. 14th - 18th May 2018 INTRODUCTION TO MIXED MODELS FOR BIOLOGISTS #IMBR CANADA (QUEBEC), Prof Subhash Lele 19. 21st - 25th May 2018 INTRODUCTION TO REMOTE SENISNG AND GIS FOR ECOLOGICAL APPLICATIONS Glasgow, Scotland, Prof. Duccio Rocchini, Dr. Luca Delucchi https://www.prinformatics.com/course/introduction-to-remote-sensing-and-gis- for-ecological-applications-irms01/ 20. 28th May – 1st June 2018 STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR #SIMM CANADA (QUEBEC) Dr. Andrew Parnell, Dr. Andrew Jackson -- 21. July 2nd - 5th 2018 SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R #SNAR Glasgow, Scotland, Prof James Curley COMING SOON www.PSstatistics.com 22. 8th – 12th July 2018 MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R #MBMV Glasgow, Scotland, Prof David Warton https://www.prstatistics.com/course/model-base-multivariate-analysis-of- abundance-data-using-r-mbmv02/ 23. 16th – 20th July 2018 TRANSCRIPTOME ANALYSIS, VISUALIZATION AND INTERPRETATION #TAVI Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith COMING SOON www.prinformatics.com 24. 23rd – 27th July 2018 EUKARYOTIC METABARCODING Glasgow, Scotland, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ -- Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] Course on Phylogenetic data analysis
February 19th – 23rd 2018 GEOMETRIC MORPHOMETRICS USING R #GMMR Margam Discovery Centre, Wales, Prof. Dean Adams, Prof. Michael Collyer, Dr. Antigoni Kaliontzopoulou http://www.prstatistics.com/course/geometric-morphometrics-using-r-gmmr01/ -- 9. March 5th – 9th 2018 FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION #FEER Margam Discovery Centre, Wales, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 10. March 5th - 9th 2018 SPATIAL PRIORITIZATION USING MARXAN #MRXN Margam Discovery Centre, Wales, Jennifer McGowan https://www.prstatistics.com/course/introduction-to-marxan-mrxn01/ 11. 12th - 16th March 2018 ECOLOGICAL NICHE MODELLING USING R #ENMR Glasgow, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr02/ 12. March 19th – 23rd 2018 BEHAVIOURAL DATA ANALYSIS USING MAXIMUM LIKLIHOOD IN R #BDML Glasgow, Scotland, Dr William Hoppitt COMING SOON www.PSstatistics.com -- 13. April 9th – 13th 2018 NETWORK ANAYLSIS FOR ECOLOGISTS USING R #NTWA Glasgow, Scotland, Dr. Marco Scotti https://www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 14. April 16th – 20th 2018 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R #IPSY Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre COMING SOON www.PSstatistics.com 15. April 23rd – 27th 2018 MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE #VGNR Glasgow, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet https://www.prstatistics.com/course/multivariate-analysis-of-ecological- communities-in-r-with-the-vegan-package-vgnr01/ 16. April 30th – 4th May 2018 QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES #QGER Glasgow, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick COMING SOON www.PRstatistics.com -- 17. 7th – 11th May 2018 ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R #MVSP CANADA (QUEBEC), Prof. Pierre Legendre, Dr. Guillaume Blanchet 18. 14th - 18th May 2018 INTRODUCTION TO MIXED MODELS FOR BIOLOGISTS #IMBR CANADA (QUEBEC), Prof Subhash Lele 19. 21st - 25th May 2018 INTRODUCTION TO REMOTE SENISNG AND GIS FOR ECOLOGICAL APPLICATIONS Glasgow, Scotland, Prof. Duccio Rocchini, Dr. Luca Delucchi https://www.prinformatics.com/course/introduction-to-remote-sensing-and-gis- for-ecological-applications-irms01/ 20. 28th May – 1st June 2018 STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR #SIMM CANADA (QUEBEC) Dr. Andrew Parnell, Dr. Andrew Jackson -- 21. July 2nd - 5th 2018 SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R #SNAR Glasgow, Scotland, Prof James Curley COMING SOON www.PSstatistics.com 22. 8th – 12th July 2018 MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R #MBMV Glasgow, Scotland, Prof David Warton https://www.prstatistics.com/course/model-base-multivariate-analysis-of- abundance-data-using-r-mbmv02/ 23. 16th – 20th July 2018 TRANSCRIPTOME ANALYSIS, VISUALIZATION AND INTERPRETATION #TAVI Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith COMING SOON www.prinformatics.com 24. 23rd – 27th July 2018 EUKARYOTIC METABARCODING Glasgow, Scotland, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ -- Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] Part funded Scholarships for Course - Applied Bayesian Modelling For Ecologists Nov 20-25
ON) GENETIC DATA ANALYSIS USING R #LNDG 6th – 10th November 2017, Wales, Prof. Rodney Dyer http://www.prstatistics.com/course/landscape-genetic-data-analysis-using-r- lndg02/ 6. APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS #ABME 20th - 25th November 2017, SCENE, Scotland, Dr. Matt Denwood http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists- epidemiologists-abme03/ 7. INTRODUCTION TO PYTHON FOR BIOLOGISTS #IPYB 27th Nov – 1st Dec, Wales, Dr. Martin Jones http://www.prinformatics.com/course/introduction-to-python-for-biologists- ipyb04/ 8. ADVANCING IN STATISTICAL MODELLING USING R #ADVR 4th - 8th December 2017, Wales, Dr. Luc Bussiere, Dr. Tom Houslay, Dr. Ane Timenes Laugen, http://www.prstatistics.com/course/advancing-statistical-modelling-using-r- advr07/ 9. INTRODUCTION TO BAYESIAN HIERARCHICAL MODELLING #IBHM 29th Jan – 2nd Feb 2018, SCENE, Scotland, Dr. Andrew Parnell http://www.prstatistics.com/course/introduction-to-bayesian-hierarchical- modelling-using-r-ibhm02/ 10. PHYLOGENETIC DATA ANALYSIS USING R #PHYL 28th Jan – Feb 2nd 2018, SCENE, Scotland, Dr. Emmanuel Paradis https://www.prstatistics.com/course/introduction-to-phylogenetic-analysis- with-r-phyg-phyl02/ 11. MOVEMENT ECOLOGY #MOVE 19th – 23rd February 2018, Wales, Dr Luca Borger, Dr Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move01/ 12. GEOMETRIC MORPHOMETRICS USING R #GMMR 19th – 23rd February 2018, Wales, Prof. Dean Adams, Prof. Michael Collyer, Dr. Antigoni Kaliontzopoulou http://www.prstatistics.com/course/geometric-morphometrics-using-r-gmmr01/ 13. FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION #FEER 5th – 9th March 2018, SCENE, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 14. SPATIAL PRIORITIZATION USING MARXAN #MRXN 5th - 9th March 2018, Wales, Jennifer McGowan https://www.prstatistics.com/course/introduction-to-marxan-mrxn01/ 15. ECOLOGICAL NICHE MODELLING USING R #ENMR 12th - 16th March 2018, SCENE, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr02/ 16. BEHAVIOURAL DATA ANALYSIS USING MAXIMUM LIKLIHOOD IN R #BDML 19th – 23rd March 2018, Scotland, Dr William Hoppitt COMING SOON www.PSstatistics.com 17. NETWORK ANAYLSIS FOR ECOLOGISTS USING R #NTWA 9th – 13th April 2018, SCENE, Scotland, Dr. Marco Scotti https://www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 18. INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R #IPSY 16th – 20th April 2018, SCENE, Scotland, Dr. Dale Barr, Dr Luc Bussierre COMING SOON www.PSstatistics.com 19. MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE #VGNR 23rd – 27th April 2018, SCENE, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet https://www.prstatistics.com/course/multivariate-analysis-of-ecological- communities-in-r-with-the-vegan-package-vgnr01/ 20. QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES #QGER 30th April – 4th May 2018, SCENE, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick COMING SOON www.PRstatistics.com 21. INTRODUCTION TO MIXED MODELS FOR ECOLOGISTS #IMMR 14th - 18th May 2018, CANADA (QUEBEC) STILL to be confirmed, Prof Subhash Lele, Dr. Guillaume Blanchet 22. STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR #SIMM 28th May – 1st June 2018, CANADA (QUEBEC) STILL to be confirmed Dr. Andrew Parnell, Dr. Andrew Jackson 23. SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R #SNAR 2nd - 5th12th July 2018, Prof James Curley COMING SOON www.PSstatistics.com 24. MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R #MBMV 8th – 12th July 2018, Prof David Warton https://www.prstatistics.com/course/model-base-multivariate-analysis-of- abundance-data-using-r-mbmv02/ 25. EUKARYOTIC METABARCODING 23rd – 27th July 2018, Wales, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ 26. ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R #MVSP Prof. Pierre Legendre, Dr. Olivier Gauthier - Date and location to be confirmed -- Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] UK.AdvancingInStatisticalModellingForEvolutionaryBiologistsAndEcologistsUsingR.Dec4-8
berger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 14. SPATIAL PRIORITIZATION USING MARXAN #MRXN 5th - 9th March 2018, Wales, Jennifer McGowan https://www.prstatistics.com/course/introduction-to-marxan-mrxn01/ 15. ECOLOGICAL NICHE MODELLING USING R #ENMR 12th - 16th March 2018, SCENE, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr02/ 16. BEHAVIOURAL DATA ANALYSIS USING MAXIMUM LIKLIHOOD IN R #BDML 19th – 23rd March 2018, Scotland, Dr William Hoppitt COMING SOON www.PSstatistics.com 17. NETWORK ANAYLSIS FOR ECOLOGISTS USING R #NTWA 9th – 13th April 2018, SCENE, Scotland, Dr. Marco Scotti https://www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 18. INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R #IPSY 16th – 20th April 2018, SCENE, Scotland, Dr. Dale Barr, Dr Luc Bussierre COMING SOON www.PSstatistics.com 19. MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE #VGNR 23rd – 27th April 2018, SCENE, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet https://www.prstatistics.com/course/multivariate-analysis-of-ecological- communities-in-r-with-the-vegan-package-vgnr01/ 20. QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES #QGER 30th April – 4th May 2018, SCENE, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick COMING SOON www.PRstatistics.com 21. INTRODUCTION TO MIXED MODELS FOR ECOLOGISTS #IMMR 14th - 18th May 2018, CANADA (QUEBEC) STILL to be confirmed, Prof Subhash Lele, Dr. Guillaume Blanchet 22. STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR #SIMM 28th May – 1st June 2018, CANADA (QUEBEC) STILL to be confirmed Dr. Andrew Parnell, Dr. Andrew Jackson 23. SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R #SNAR 2nd - 5th12th July 2018, Prof James Curley COMING SOON www.PSstatistics.com 24. MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R #MBMV 8th – 12th July 2018, Prof David Warton https://www.prstatistics.com/course/model-base-multivariate-analysis-of- abundance-data-using-r-mbmv02/ 25. EUKARYOTIC METABARCODING 23rd – 27th July 2018, Wales, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ 26. ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R #MVSP Prof. Pierre Legendre, Dr. Olivier Gauthier - Date -- Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] UK.FINALCALL.AppliedBayesianModellingForEcologistsAndEpidemiologists.Nov20-25
NALYSIS USING R #PHYL 28th Jan – Feb 2nd 2018, SCENE, Scotland, Dr. Emmanuel Paradis https://www.prstatistics.com/course/introduction-to-phylogenetic-analysis- with-r-phyg-phyl02/ 11. MOVEMENT ECOLOGY #MOVE 19th – 23rd February 2018, Wales, Dr Luca Borger, Dr Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move01/ 12. GEOMETRIC MORPHOMETRICS USING R #GMMR 19th – 23rd February 2018, Wales, Prof. Dean Adams, Prof. Michael Collyer, Dr. Antigoni Kaliontzopoulou http://www.prstatistics.com/course/geometric-morphometrics-using-r-gmmr01/ 13. FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION #FEER 5th – 9th March 2018, SCENE, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 14. SPATIAL PRIORITIZATION USING MARXAN #MRXN 5th - 9th March 2018, Wales, Jennifer McGowan https://www.prstatistics.com/course/introduction-to-marxan-mrxn01/ 15. ECOLOGICAL NICHE MODELLING USING R #ENMR 12th - 16th March 2018, SCENE, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr02/ 16. BEHAVIOURAL DATA ANALYSIS USING MAXIMUM LIKLIHOOD IN R #BDML 19th – 23rd March 2018, Scotland, Dr William Hoppitt COMING SOON www.PSstatistics.com 17. NETWORK ANAYLSIS FOR ECOLOGISTS USING R #NTWA 9th – 13th April 2018, SCENE, Scotland, Dr. Marco Scotti https://www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 18. INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R #IPSY 16th – 20th April 2018, SCENE, Scotland, Dr. Dale Barr, Dr Luc Bussierre COMING SOON www.PSstatistics.com 19. MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE #VGNR 23rd – 27th April 2018, SCENE, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet https://www.prstatistics.com/course/multivariate-analysis-of-ecological- communities-in-r-with-the-vegan-package-vgnr01/ 20. QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES #QGER 30th April – 4th May 2018, SCENE, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick COMING SOON www.PRstatistics.com 21. INTRODUCTION TO MIXED MODELS FOR ECOLOGISTS #IMMR 14th - 18th May 2018, CANADA (QUEBEC) STILL to be confirmed, Prof Subhash Lele, Dr. Guillaume Blanchet 22. STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR #SIMM 28th May – 1st June 2018, CANADA (QUEBEC) STILL to be confirmed Dr. Andrew Parnell, Dr. Andrew Jackson 23. SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R #SNAR 2nd - 5th12th July 2018, Prof James Curley COMING SOON www.PSstatistics.com 24. MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R #MBMV 8th – 12th July 2018, Prof David Warton https://www.prstatistics.com/course/model-base-multivariate-analysis-of- abundance-data-using-r-mbmv02/ 25. EUKARYOTIC METABARCODING 23rd – 27th July 2018, Wales, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ 26. ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R #MVSP Prof. Pierre Legendre, Dr. Olivier Gauthier - Date -- Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] UK.FINALCALL.LandscapeGenomics/GeneticsUsingR.Nov6-10
SCENE, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr02/ 16. BEHAVIOURAL DATA ANALYSIS USING MAXIMUM LIKLIHOOD IN R #BDML 19th – 23rd March 2018, Scotland, Dr William Hoppitt COMING SOON www.PSstatistics.com 17. NETWORK ANAYLSIS FOR ECOLOGISTS USING R #NTWA 9th – 13th April 2018, SCENE, Scotland, Dr. Marco Scotti https://www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 18. INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R #IPSY 16th – 20th April 2018, SCENE, Scotland, Dr. Dale Barr, Dr Luc Bussierre COMING SOON www.PSstatistics.com 19. MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE #VGNR 23rd – 27th April 2018, SCENE, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet https://www.prstatistics.com/course/multivariate-analysis-of-ecological- communities-in-r-with-the-vegan-package-vgnr01/ 20. QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES #QGER 30th April – 4th May 2018, SCENE, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick COMING SOON www.PRstatistics.com 21. INTRODUCTION TO MIXED MODELS FOR ECOLOGISTS #IMMR 14th - 18th May 2018, CANADA (QUEBEC) STILL to be confirmed, Prof Subhash Lele, Dr. Guillaume Blanchet 22. STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR #SIMM 28th May – 1st June 2018, CANADA (QUEBEC) STILL to be confirmed Dr. Andrew Parnell, Dr. Andrew Jackson 23. SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R #SNAR 2nd - 5th12th July 2018, Prof James Curley COMING SOON www.PSstatistics.com 24. MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R #MBMV 8th – 12th July 2018, Prof David Warton https://www.prstatistics.com/course/model-base-multivariate-analysis-of- abundance-data-using-r-mbmv02/ 25. EUKARYOTIC METABARCODING 23rd – 27th July 2018, Wales, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ 26. ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R #MVSP Prof. Pierre Legendre, Dr. Olivier Gauthier - Date -- Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] FINAL CALL - Structural Equation Modelling for Ecologists
elling-using-r-ibhm02/ 10. PHYLOGENETIC DATA ANALYSIS USING R #PHYL 28th Jan – Feb 2nd 2018, SCENE, Scotland, Dr. Emmanuel Paradis https://www.prstatistics.com/course/introduction-to-phylogenetic-analysis- with-r-phyg-phyl02/ 11. MOVEMENT ECOLOGY #MOVE 19th – 23rd February 2018, Wales, Dr Luca Borger, Dr Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move01/ 12. GEOMETRIC MORPHOMETRICS USING R #GMMR 19th – 23rd February 2018, Wales, Prof. Dean Adams, Prof. Michael Collyer, Dr. Antigoni Kaliontzopoulou http://www.prstatistics.com/course/geometric-morphometrics-using-r-gmmr01/ 13. FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION #FEER 5th – 9th March 2018, SCENE, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 14. SPATIAL PRIORITIZATION USING MARXAN #MRXN 5th - 9th March 2018, Wales, Jennifer McGowan https://www.prstatistics.com/course/introduction-to-marxan-mrxn01/ 15. ECOLOGICAL NICHE MODELLING USING R #ENMR 12th - 16th March 2018, SCENE, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr02/ 16. BEHAVIOURAL DATA ANALYSIS USING MAXIMUM LIKLIHOOD IN R #BDML 19th – 23rd March 2018, Scotland, Dr William Hoppitt COMING SOON www.PSstatistics.com 17. NETWORK ANAYLSIS FOR ECOLOGISTS USING R #NTWA 9th – 13th April 2018, SCENE, Scotland, Dr. Marco Scotti https://www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 18. INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R #IPSY 16th – 20th April 2018, SCENE, Scotland, Dr. Dale Barr, Dr Luc Bussierre COMING SOON www.PSstatistics.com 19. MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE #VGNR 23rd – 27th April 2018, SCENE, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet https://www.prstatistics.com/course/multivariate-analysis-of-ecological- communities-in-r-with-the-vegan-package-vgnr01/ 20. QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES #QGER 30th April – 4th May 2018, SCENE, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick COMING SOON www.PRstatistics.com 21. INTRODUCTION TO MIXED MODELS FOR ECOLOGISTS #IMMR 14th - 18th May 2018, CANADA (QUEBEC) STILL to be confirmed, Prof Subhash Lele, Dr. Guillaume Blanchet 22. STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR #SIMM 28th May – 1st June 2018, CANADA (QUEBEC) STILL to be confirmed Dr. Andrew Parnell, Dr. Andrew Jackson 23. SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R #SNAR 2nd - 5th12th July 2018, Prof James Curley COMING SOON www.PSstatistics.com 24. MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R #MBMV 8th – 12th July 2018, Prof David Warton https://www.prstatistics.com/course/model-base-multivariate-analysis-of- abundance-data-using-r-mbmv02/ 25. EUKARYOTIC METABARCODING 23rd – 27th July 2018, Wales, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ 26. ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R #MVSP Prof. Pierre Legendre, Dr. Olivier Gauthier - Date and location to be confirmed -- Oliver Hooker PhD. PR informatics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. - The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prinformatics.com twitter.com/PRinformatics facebook.com/prstatistics/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] FINAL CALL - Reproducible data science for population genetics
avar https://www.prstatistics.com/course/reproducible-data-science-for- population-genetics-rdpg01/ 4. STRUCTURAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS USING R #SEMR 23rd – 27th October 2017, Wales, Prof Jarrett Byrnes, Dr. Jon Lefcheck http://www.prstatistics.com/course/structural-equation-modelling-for- ecologists-and-evolutionary-biologists-semr01/ 5. LANDSCAPE (POPULATION) GENETIC DATA ANALYSIS USING R #LNDG 6th – 10th November 2017, Wales, Prof. Rodney Dyer http://www.prstatistics.com/course/landscape-genetic-data-analysis-using-r- lndg02/ 6. APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS #ABME 20th - 25th November 2017, SCENE, Scotland, Dr. Matt Denwood http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists- epidemiologists-abme03/ 7. INTRODUCTION TO PYTHON FOR BIOLOGISTS #IPYB 27th Nov – 1st Dec, Wales, Dr. Martin Jones http://www.prinformatics.com/course/introduction-to-python-for-biologists- ipyb04/ 8. ADVANCING IN STATISTICAL MODELLING USING R #ADVR 4th - 8th December 2017, Wales, Dr. Luc Bussiere, Dr. Tom Houslay, Dr. Ane Timenes Laugen, http://www.prstatistics.com/course/advancing-statistical-modelling-using-r- advr07/ 9. INTRODUCTION TO BAYESIAN HIERARCHICAL MODELLING #IBHM 29th Jan – 2nd Feb 2018, SCENE, Scotland, Dr. Andrew Parnell http://www.prstatistics.com/course/introduction-to-bayesian-hierarchical- modelling-using-r-ibhm02/ 10. PHYLOGENETIC DATA ANALYSIS USING R #PHYL 28th Jan – Feb 2nd 2018, SCENE, Scotland, Dr. Emmanuel Paradis https://www.prstatistics.com/course/introduction-to-phylogenetic-analysis- with-r-phyg-phyl02/ 11. MOVEMENT ECOLOGY #MOVE 19th – 23rd February 2018, Wales, Dr Luca Borger, Dr Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move01/ 12. GEOMETRIC MORPHOMETRICS USING R #GMMR 19th – 23rd February 2018, Wales, Prof. Dean Adams, Prof. Michael Collyer, Dr. Antigoni Kaliontzopoulou http://www.prstatistics.com/course/geometric-morphometrics-using-r-gmmr01/ 13. FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION #FEER 5th – 9th March 2018, SCENE, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 14. SPATIAL PRIORITIZATION USING MARXAN #MRXN 5th - 9th March 2018, Wales, Jennifer McGowan https://www.prstatistics.com/course/introduction-to-marxan-mrxn01/ 15. ECOLOGICAL NICHE MODELLING USING R #ENMR 12th - 16th March 2018, SCENE, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr02/ 16. BEHAVIOURAL DATA ANALYSIS USING MAXIMUM LIKLIHOOD IN R #BDML 19th – 23rd March 2018, Scotland, Dr William Hoppitt COMING SOON www.PSstatistics.com 17. NETWORK ANAYLSIS FOR ECOLOGISTS USING R #NTWA 9th – 13th April 2018, SCENE, Scotland, Dr. Marco Scotti https://www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 18. INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R #IPSY 16th – 20th April 2018, SCENE, Scotland, Dr. Dale Barr, Dr Luc Bussierre COMING SOON www.PSstatistics.com 19. MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE #VGNR 23rd – 27th April 2018, SCENE, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet https://www.prstatistics.com/course/multivariate-analysis-of-ecological- communities-in-r-with-the-vegan-package-vgnr01/ 20. QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES #QGER 30th April – 4th May 2018, SCENE, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick COMING SOON www.PRstatistics.com 21. INTRODUCTION TO MIXED MODELS FOR ECOLOGISTS #IMMR 14th - 18th May 2018, CANADA (QUEBEC) STILL to be confirmed, Prof Subhash Lele, Dr. Guillaume Blanchet 22. STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR #SIMM 28th May – 1st June 2018, CANADA (QUEBEC) STILL to be confirmed Dr. Andrew Parnell, Dr. Andrew Jackson 23. SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R #SNAR 2nd - 5th12th July 2018, Prof James Curley COMING SOON www.PSstatistics.com 24. MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R #MBMV 8th – 12th July 2018, Prof David Warton https://www.prstatistics.com/course/model-base-multivariate-analysis-of- abundance-data-using-r-mbmv02/ 25. EUKARYOTIC METABARCODING 23rd – 27th July 2018, Wales, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ 26. ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R #MVSP Prof. Pierre Legendre, Dr. Olivier Gauthier - Date and location to be confirmed Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The phy
[ECOLOG-L] Intro course 'Python for biologists'
-phyg-phyl02/ 11. MOVEMENT ECOLOGY #MOVE 19th – 23rd February 2018, Wales, Dr Luca Borger, Dr Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move01/ 12. GEOMETRIC MORPHOMETRICS USING R #GMMR 19th – 23rd February 2018, Wales, Prof. Dean Adams, Prof. Michael Collyer, Dr. Antigoni Kaliontzopoulou http://www.prstatistics.com/course/geometric-morphometrics-using-r-gmmr01/ 13. FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION #FEER 5th – 9th March 2018, SCENE, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 14. SPATIAL PRIORITIZATION USING MARXAN #MRXN 5th - 9th March 2018, Wales, Jennifer McGowan https://www.prstatistics.com/course/introduction-to-marxan-mrxn01/ 15. ECOLOGICAL NICHE MODELLING USING R #ENMR 12th - 16th March 2018, SCENE, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr02/ 16. BEHAVIOURAL DATA ANALYSIS USING MAXIMUM LIKLIHOOD IN R #BDML 19th – 23rd March 2018, Scotland, Dr William Hoppitt COMING SOON www.PSstatistics.com 17. NETWORK ANAYLSIS FOR ECOLOGISTS USING R #NTWA 9th – 13th April 2018, SCENE, Scotland, Dr. Marco Scotti https://www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 18. INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R #IPSY 16th – 20th April 2018, SCENE, Scotland, Dr. Dale Barr, Dr Luc Bussierre COMING SOON www.PSstatistics.com 19. MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE #VGNR 23rd – 27th April 2018, SCENE, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet https://www.prstatistics.com/course/multivariate-analysis-of-ecological- communities-in-r-with-the-vegan-package-vgnr01/ 20. QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES #QGER 30th April – 4th May 2018, SCENE, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick COMING SOON www.PRstatistics.com 21. INTRODUCTION TO MIXED MODELS FOR ECOLOGISTS #IMMR 14th - 18th May 2018, CANADA (QUEBEC) STILL to be confirmed, Prof Subhash Lele, Dr. Guillaume Blanchet 22. STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR #SIMM 28th May – 1st June 2018, CANADA (QUEBEC) STILL to be confirmed Dr. Andrew Parnell, Dr. Andrew Jackson 23. SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R #SNAR 2nd - 5th12th July 2018, Prof James Curley COMING SOON www.PSstatistics.com 24. MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R #MBMV 8th – 12th July 2018, Prof David Warton https://www.prstatistics.com/course/model-base-multivariate-analysis-of- abundance-data-using-r-mbmv02/ 25. EUKARYOTIC METABARCODING 23rd – 27th July 2018, Wales, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ 26. ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R #MVSP Prof. Pierre Legendre, Dr. Olivier Gauthier - Date and location to be confirmed -- Oliver Hooker PhD. PR informatics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. - The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prinformatics.com twitter.com/PRinformatics facebook.com/prstatistics/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] Course on - 'Movement ecology' - Luca Borger, Rory Wilson, Jonathan Potts
Tom Houslay, Dr. Ane Timenes Laugen, http://www.prstatistics.com/course/advancing-statistical-modelling-using-r- advr07/ 10. DATA VISUALISATION AND MANIPULATION USING PYTHON #DVMP 11th – 15th December 2017, Wales, Dr. Martin Jones http://www.prinformatics.com/course/data-visualisation-and-manipulation- using-python-dvmp01/ 11. INTRODUCTION TO BAYESIAN HIERARCHICAL MODELLING #IBHM 29th Jan – 2nd Feb 2018, SCENE, Scotland, Dr. Andrew Parnell http://www.prstatistics.com/course/introduction-to-bayesian-hierarchical- modelling-using-r-ibhm02/ 12. PHYLOGENETIC DATA ANALYSIS USING R #PHYL 28th Jan – Feb 2nd 2018, SCENE, Scotland, Dr. Emmanuel Paradis https://www.prstatistics.com/course/introduction-to-phylogenetic-analysis- with-r-phyg-phyl02/ 13. MOVEMENT ECOLOGY #MOVE 19th – 23rd February 2018, Wales, Dr Luca Borger, Dr. John Fieberg https://www.prstatistics.com/course/movement-ecology-move01/ 14. GEOMETRIC MORPHOMETRICS USING R #GMMR 19th – 23rd February 2018, Wales, Prof. Dean Adams, Prof. Michael Collyer, Dr. Antigoni Kaliontzopoulou http://www.prstatistics.com/course/geometric-morphometrics-using-r-gmmr01/ 15. FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION #FEER 5th – 9th March 2018, SCENE, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 16. SPATIAL PRIORITIZATION USING MARXAN #MRXN 5th - 9th March 2018, Wales, Jennifer McGowan https://www.prstatistics.com/course/introduction-to-marxan-mrxn01/ 17. ECOLOGICAL NICHE MODELLING USING R #ENMR 12th - 16th March 2018, SCENE, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr02/ 18. MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE #VGNR 23rd – 27th April 2018, SCENE, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet https://www.prstatistics.com/course/multivariate-analysis-of-ecological- communities-in-r-with-the-vegan-package-vgnr01/ 19. NETWORK ANAYLSIS FOR ECOLOGISTS USING R #NTWA 9th – 13th April 2018, SCENE, Scotland, Dr. Marco Scotti https://www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 20. QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES #QGER 30th April – 4th May 2018, SCENE, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick 21. INTRODUCTION TO MIXED MODELS FOR ECOLOGISTS #IMMR 14th - 18th May 2018, CANADA (QUEBEC) STILL to be confirmed, Prof Subhash Lele, Dr. Guillaume Blanchet 22. STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR #SIMM 28th May – 1st June 2018, CANADA (QUEBEC) STILL to be confirmed Dr. Andrew Parnell, Dr. Andrew Jackson 23. MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R #MBMV 8th – 12th July 2018, Prof David Warton https://www.prstatistics.com/course/model-base-multivariate-analysis-of- abundance-data-using-r-mbmv02/ 24. EUKARYOTIC METABARCODING 23rd – 27th July 2018, Wales, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ 25. ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R #MVSP Prof. Pierre Legendre, Dr. Olivier Gauthier - Date and location to be confirmed Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] Course on how to use MARXAN
TO ECOSYSTEM: THEORY AND COMPUTATION #FEER 5th – 9th March 2018, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 12. SPATIAL PRIORITIZATION USING MARXAN 5th - 9th March 2018, Wales, Jennifer McGowan https://www.prstatistics.com/course/introduction-to-marxan-mrxn01/ 13. ECOLOGICAL NICHE MODELLING USING R #ENMR 12th - 16th March 2018, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr02/ 14. MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE #VGNR 23rd – 27th April 2018, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet https://www.prstatistics.com/course/multivariate-analysis-of-ecological- communities-in-r-with-the-vegan-package-vgnr01/ 15. NETWORK ANAYLSIS FOR ECOLOGISTS USING R #NTWA 9th – 13th April 2018, Scotland, Dr. Marco Scotti https://www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 16. QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES 30th April – 4th May 2018, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick 17. INTRODUCTION TO MIXED MODELS FOR ECOLOGISTS #IMMR 28th May – 1st June 2018, Canada, Prof Subhash Lele, Dr. Guillaume Blanchet 18. MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R #MBMV0 8th – 12th July 2018, Prof David Warton https://www.prstatistics.com/course/model-base-multivariate-analysis-of- abundance-data-using-r-mbmv02/ 19. ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R #MVSP Prof. Pierre Legendre, Dr. Olivier Gauthier - Date and location to be confirmed 20. STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR #SIMM Dr. Andrew Parnell, Dr. Andrew Jackson – Date and location to be confirmed 21. MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA #MASE Prof. Subhash Lele, Dr. Peter Solymos - Date and location to be confirmed 22. TIME SERIES MODELS FOR ECOLOGISTS USING R (JUNE 2017 #TSME Dr. Andrew Parnell - Date and location to be confirmed 23. SPATIAL ANALYSIS OF ECOLOGICAL DATA USING R #METR Prof. Jason Matthiopoulos – Date and location to be confirmed 24. META-ANALYSIS IN ECOLOGY, EVOLUTION AND ENVIRONMENTAL SCIENCES #METR Prof. Julia Koricheva, Prof. Elena Kulinskaya – Date and location to be c -- Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
[ECOLOG-L] Course on how to use the R package VEGAN
. FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION #FEER 5th – 9th March 2018, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 12. SPATIAL PRIORITIZATION USING MARXAN 5th - 9th March 2018, Wales, Jennifer McGowan https://www.prstatistics.com/course/introduction-to-marxan-mrxn01/ 13. ECOLOGICAL NICHE MODELLING USING R #ENMR 12th - 16th March 2018, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr02/ 14. MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE #VGNR 23rd – 27th April 2018, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet https://www.prstatistics.com/course/multivariate-analysis-of-ecological- communities-in-r-with-the-vegan-package-vgnr01/ 15. NETWORK ANAYLSIS FOR ECOLOGISTS USING R #NTWA 9th – 13th April 2018, Scotland, Dr. Marco Scotti https://www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 16. QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES 30th April – 4th May 2018, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick 17. INTRODUCTION TO MIXED MODELS FOR ECOLOGISTS #IMMR 28th May – 1st June 2018, Canada, Prof Subhash Lele, Dr. Guillaume Blanchet 18. MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R #MBMV0 8th – 12th July 2018, Prof David Warton https://www.prstatistics.com/course/model-base-multivariate-analysis-of- abundance-data-using-r-mbmv02/ 19. ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R #MVSP Prof. Pierre Legendre, Dr. Olivier Gauthier - Date and location to be confirmed 20. STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR #SIMM Dr. Andrew Parnell, Dr. Andrew Jackson – Date and location to be confirmed 21. MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA #MASE Prof. Subhash Lele, Dr. Peter Solymos - Date and location to be confirmed 22. TIME SERIES MODELS FOR ECOLOGISTS USING R (JUNE 2017 #TSME Dr. Andrew Parnell - Date and location to be confirmed 23. SPATIAL ANALYSIS OF ECOLOGICAL DATA USING R #METR Prof. Jason Matthiopoulos – Date and location to be confirmed 24. META-ANALYSIS IN ECOLOGY, EVOLUTION AND ENVIRONMENTAL SCIENCES #METR Prof. Julia Koricheva, Prof. Elena Kulinskaya – Date and location to be c -- Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340