Re: [Fink-devel] pymol in 10.7
Bill, Thanks for this explanation - with this excellent info it only seems logical to include scipy and gcc to the package, no need to make a lite version, as far as I am concerned. Sorry for the noise :) - Koen. On Jul 31, 2011, at 7:21 PM, William G. Scott wrote: Dear Koen et al: The reason for the inclusion of scipy it to support two pymol plugins: APBS (an electrostatics program that is quite popular amongst structural molecular biologists) and a py-nmr plugin (of use to NMR spectroscopists). There may be other reasons as well that I am not aware of. Please note, even if the plugins that I and other maintainers in this package's history were removed, and the dependency upon scipy, there would STILL be a required dependency on gcc46 (or some form of gfortran) because of the python gui, i.e., the tkinter python megawidgets has a dependency upon BLT (a tcltk widget), and BLT has a dependency upon a fortran component. Omitting the fortran components from BLT still allows it to compile, but it is not the fully-enabled BLT required by some other packages. So we are doomed, unless we want to create a separate set of dependencies for a slimmed-down pymol. I am willing to do this, but this does come with some overhead. Bill -- Got Input? Slashdot Needs You. Take our quick survey online. Come on, we don't ask for help often. Plus, you'll get a chance to win $100 to spend on ThinkGeek. http://p.sf.net/sfu/slashdot-survey ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] pymol in 10.7
On Jul 30, 2011, at 5:13 AM, Hanspeter Niederstrasser wrote: On 7/29/2011 9:52 PM, Koen van der Drift wrote: On Jul 29, 2011, at 5:27 PM, Michael Lerner wrote: Newer versions of PyMOL include several modules (scipy, numpy, matplotlib). My understanding is that this was done to make it easier to write and support plugins and extensions. I don't know how fink does things, but perhaps you could ship a lite version. You may wish to talk with Jason Vertrees directly or on the PyMOL list. Cheers, -Michael Which newer version of pymol are you referring to, the one in fink (1.4) has no mention of scipy or matplotlib in the sourcecode, only numpy. - Koen. pymol-py27 1.4-7 has a dependency on scipy-py27, which has a build dependency on gcc46. Hanspeter I was referring to the source code, not the info file :) But why is scipy in the info file? There is no need in pymol1.4 for scipy, which was my original question. Just trying to understand why this was added. Maybe Jack Howarth can explain, since he was involved in the transfer as the maintainer explained to me? Cheers, - Koen. -- Got Input? Slashdot Needs You. Take our quick survey online. Come on, we don't ask for help often. Plus, you'll get a chance to win $100 to spend on ThinkGeek. http://p.sf.net/sfu/slashdot-survey ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
[Fink-devel] pymol in 10.7
Hi, I recently switched to Lion, and tried to install pymol through fink. I noticed that the dependency on numpy has been changed into one on scipy. Scipy pulls in a slew of additional dependencies, including gcc46, making it an elaborate install process. As far as I know, there is no need for pymol to depend on scipy, numpy works just fine as I tested on my local machine. I already contacted the maintainer, but he was not involved in the move of pymol into 10.7. Cheers, - Koen. -- Got Input? Slashdot Needs You. Take our quick survey online. Come on, we don't ask for help often. Plus, you'll get a chance to win $100 to spend on ThinkGeek. http://p.sf.net/sfu/slashdot-survey ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] pymol in 10.7
Which newer version of pymol are you referring to, the one in fink (1.4) has no mention of scipy or matplotlib in the sourcecode, only numpy. - Koen. On Jul 29, 2011, at 5:27 PM, Michael Lerner wrote: Newer versions of PyMOL include several modules (scipy, numpy, matplotlib). My understanding is that this was done to make it easier to write and support plugins and extensions. I don't know how fink does things, but perhaps you could ship a lite version. You may wish to talk with Jason Vertrees directly or on the PyMOL list. Cheers, -Michael On Fri, Jul 29, 2011 at 4:16 PM, Koen van der Drift koenvanderdr...@gmail.com wrote: Hi, I recently switched to Lion, and tried to install pymol through fink. I noticed that the dependency on numpy has been changed into one on scipy. Scipy pulls in a slew of additional dependencies, including gcc46, making it an elaborate install process. As far as I know, there is no need for pymol to depend on scipy, numpy works just fine as I tested on my local machine. I already contacted the maintainer, but he was not involved in the move of pymol into 10.7. Cheers, - Koen. -- Got Input? Slashdot Needs You. Take our quick survey online. Come on, we don't ask for help often. Plus, you'll get a chance to win $100 to spend on ThinkGeek. http://p.sf.net/sfu/slashdot-survey ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel -- Michael Lerner, Ph.D. IRTA Postdoctoral Fellow Laboratory of Computational Biology NIH/NHLBI 5635 Fishers Lane, Room T909, MSC 9314 Rockville, MD 20852 (UPS/FedEx/Reality) Bethesda MD 20892-9314 (USPS) as of August 15th: Department of Physics and Astronomy Earlham College 801 National Road West Richmond, IN 47374-4095 -- Got Input? Slashdot Needs You. Take our quick survey online. Come on, we don't ask for help often. Plus, you'll get a chance to win $100 to spend on ThinkGeek. http://p.sf.net/sfu/slashdot-survey ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
[Fink-devel] unmaintain my packages
Dear Fink team, Unfortunately, due to time restrictions and other obligations, I am unable to keep maintaining my packages. Feel free to take them over, and/or unmaintain them in cvs. Many thanks, Koen van der Drift -- The Palm PDK Hot Apps Program offers developers who use the Plug-In Development Kit to bring their C/C++ apps to Palm for a share of $1 Million in cash or HP Products. Visit us here for more details: http://p.sf.net/sfu/dev2dev-palm ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
[Fink-devel] how to use gcc43 or greater?
I'm working on a package that requires gcc43 or greater. How do I define this in the info file? I could use (Build)Depends: gcc43, but if someone already has gcc44 installed, they'll end up with more than one gcc (and a lot of compilation time). The gcc version from Xcode on my system is 4.0.1 (10.5/PPC), so I need to add gcc to the info file. But maybe newer Xcode versions already have gcc43? I that case I assume don't need to add gcc43. What's the recommended way to do this? Thanks, - Koen. -- This SF.net email is sponsored by Sprint What will you do first with EVO, the first 4G phone? Visit sprint.com/first -- http://p.sf.net/sfu/sprint-com-first ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] how to use gcc43 or greater?
On Tue, Jun 29, 2010 at 2:31 PM, Alexander Hansen alexanderk.han...@gmail.com wrote: Check the linked library contents of your package. More often than not, it will wind up linked to a library from the gcc4N that you used to build it. In such a case there is no choice: you pick a gcc4N and users build that if they don't have it installed. gcc44 is now the minimum recommended version, since it works on all of our platforms, which gcc43 does not. Alright, I will use gcc44 in the info file. And I haven't even gotten to build the package without errors, so cannot check the linked libraies (if any) yet. Thanks, - Koen. -- This SF.net email is sponsored by Sprint What will you do first with EVO, the first 4G phone? Visit sprint.com/first -- http://p.sf.net/sfu/sprint-com-first ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] how to use gcc43 or greater?
And then I guess I use SetCXX=%p/bin/g++-4.N (or whatever the name of the excecutable is), correct? - Koen. On Tue, Jun 29, 2010 at 2:39 PM, Koen van der Drift koenvanderdr...@gmail.com wrote: On Tue, Jun 29, 2010 at 2:31 PM, Alexander Hansen alexanderk.han...@gmail.com wrote: Check the linked library contents of your package. More often than not, it will wind up linked to a library from the gcc4N that you used to build it. In such a case there is no choice: you pick a gcc4N and users build that if they don't have it installed. gcc44 is now the minimum recommended version, since it works on all of our platforms, which gcc43 does not. Alright, I will use gcc44 in the info file. And I haven't even gotten to build the package without errors, so cannot check the linked libraies (if any) yet. Thanks, - Koen. -- This SF.net email is sponsored by Sprint What will you do first with EVO, the first 4G phone? Visit sprint.com/first -- http://p.sf.net/sfu/sprint-com-first ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] how to use gcc43 or greater?
On Jun 29, 2010, at 3:02 PM, David R. Morrison wrote: I'm pretty sure its just %p/bin/g++-4 (without the .N) -- Dave You are correct. The package I'm working on uses the waf compiler to configure and build the sourcecode. I've added this to the info file: SetCC: %p/bin/gcc-4 SetCXX: %p/bin/g++-4 And here's the output I'm getting: Checking for program g++,c++ : ok /sw/bin/g++-4 Checking for program cpp : ok /usr/bin/cpp Checking for program ar : ok /usr/bin/ar Checking for program ranlib : ok /usr/bin/ranlib Checking for g++ : ok powerpc-apple-darwin9-gcc-4.0.1: no input files error: !!! Compiler version 4.3.5 didn't support std=c++0x flag !!! So it uses gcc43 from fink (at the moment I am still building gcc44), but also parts from gcc4.0 from Xcode. Is there anything else I can do in the info file to force the newer gcc? Thanks, - Koen. -- This SF.net email is sponsored by Sprint What will you do first with EVO, the first 4G phone? Visit sprint.com/first -- http://p.sf.net/sfu/sprint-com-first ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] libjpeg-shlibs and libjpeg dependencies in your packages!
On Jun 23, 2010, at 4:40 AM, Martin Costabel wrote: The [262] tells you that there are 262 levels of make running. Either there is an infinite loop (but then this should happen to others, too), or it is a question of parallel make running wild. Do you somehow have your fink tweaked so that it runs make -j without a finite (small) number of instances given, that is, not make -j4 or something? This has been seen on google as causing such a runaway vforking, because make then spawns as many instances of itself as it can. I haven't followed the recent discussion about parallel makes, but I seem to dimly remember that some code was added to fink that runs make -jn with a value for n that is determined from the machine itself. If such code is in your version of fink, then this could be a source of the error if it doesn't work as intended. No, I have not tweaked my fink, And it only happens when building this newer apt version. Package manager version: 0.29.99.cvs Distribution version: selfupdate-cvs Tue Jun 22 22:53:16 2010, 10.5, powerpc - Koen. -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] testing apt and dpkg
On Jun 22, 2010, at 8:46 PM, Alexander Hansen wrote: I wasn't able to reproduce the apt error on my G4 running 10.5.8 with Xcode 3.1.4--it seemed to build fine. I've posted my build log under http://akhmac.blogdns.net/~hansen/finklogs/apt/ for comparison purposes. Building apt-0.5.4 right now, and there are no problems. - Koen. -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] libjpeg-shlibs and libjpeg dependencies in your packages!
Sjors, Feel free to send me those files if they could help. I have some time tonight (I'm in the US) to test, but after that I am very busy for several days. - Koen. On Wed, Jun 23, 2010 at 9:54 AM, Sjors Gielen mailingl...@dazjorz.com wrote: Op 23 jun 2010, om 14:13 heeft Alexander Hansen het volgende geschreven: If you're running a HEAD fink the parallel build option might well be set (it's out in the wild as of 0.29.11, too). Check /sw/etc/fink.conf for a MaxBuildJobs field. Is it possible this bug is really in the configure scripts delivered with apt, and could it help if I sent Koen an .info file which re-ran automake and/or autoconf before starting to ./configure? :) Thanks, Sjors -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] testing apt and dpkg
Continuing in this thread which has the correct subject line. Alas, still no success... I tried the new apt.info from Sjors, added MaxBuildJobs: 1 to fink.conf, reverted fink from HEAD to 0.29.12-41. Still getting the same error. - Koen. -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] libjpeg-shlibs and libjpeg dependencies in your packages!
On Jun 22, 2010, at 6:06 AM, Sjors Gielen wrote: Do you have a process limit set for your shell? Not that I am aware of. What does 'ulimit -u' say? 266 Does this problem repeat if you build again, with less user processes running concurrently? (The default value for the user process limit seems to be 266, and with for example 200 tabs open in Google Chrome, you hit that limit quite quickly. Try shutting such applications down temporarily.) I quit all apps, except Terminal and Mail, and still get the same error. If I look in Activity monitor, there are much less than 266 processes running. - Koen. -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] libjpeg-shlibs and libjpeg dependencies in your packages!
On Jun 22, 2010, at 8:39 AM, Alexander Hansen wrote: I've historically resorted to logging out and back in or rebooting when I've had this error. Still get the same error after a reboot. - Koen. -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] sudo apt-get remove question
On Jun 12, 2010, at 6:40 AM, Martin Costabel wrote: You will probably get the same complaint from apt-get whenever you ask it to do *anything*. It just refuses to work as long as it feels something is unclean in its database. dpkg is much less inhibited, you can use it to --remove --force-all whatever you wish. OTOH, the complaint seems to indicate among other things that xml- parser-pm588 is not installed, at least not according to apt-get. I don't know if apt-get or apt-cache can give you more detailed information, but dpkg -l will. It is installed, from fink list --installed: i xml-parser-pm588 2.36-2 Perl ext interface to XML parser/expat and from dpkg -l ri xml-parser-pm588 2.36-2Perl ext interface to XML parser/expat In the end I was able to remove it one package at the time: $ fink remove intltool40 $ fink remove xml-parser-pm588 - Koen. -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] data-serializer-pm
On Jun 11, 2010, at 9:13 AM, Alexander Hansen wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 6/11/10 8:28 AM, Koen van der Drift wrote: Lat night I noticed that my package data-serializer-pm does not install properly, nothing gets installed in /sw/lib/, only stuff in /sw/share/. I actually noticed it because another package I maintain complaint about a missing data-serializer-pm. Weird, since I've build the other package successfully before. In any event, I am going to look at it more this weekend, maybe it's related to a new upstream. In the meantime, could someone check if this also happens on thier system? I am on PPC/10.5. Thanks, - Koen. data-serializer-pm5(86|88|100)-0.49-1 doesn't even build for me on 10.5/(i386|powerpc): I just committed a fix in cvs, could you test it to see if it works on your system? Thanks, - Koen. -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
[Fink-devel] data-serializer-pm
Lat night I noticed that my package data-serializer-pm does not install properly, nothing gets installed in /sw/lib/, only stuff in /sw/share/. I actually noticed it because another package I maintain complaint about a missing data-serializer-pm. Weird, since I've build the other package successfully before. In any event, I am going to look at it more this weekend, maybe it's related to a new upstream. In the meantime, could someone check if this also happens on thier system? I am on PPC/10.5. Thanks, - Koen. -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] data-serializer-pm
On Fri, Jun 11, 2010 at 9:13 AM, Alexander Hansen alexanderk.han...@gmail.com wrote: -BEGIN PGP SIGNED MESSAGE- make: *** No rule to make target `install'. Stop. (with or without building in maintainer mode), so I have no clue how you got your results. Thanks for testing, Alex. Weird it doesn't build at all on your similar) system. To be continued... - Koen. -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] arch: Unknown architecture: powerpc error on PPC
If anyone wants to fix and/or take over my module-build packages, feel free to do so, I really don't have time right now to dig into this. I took them over a while ago, because they were needed by another package I maintain, but I have not enough knowledge to understand and fix this issue. - Koen. -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] arch: Unknown architecture: powerpc error on PPC
On Jun 7, 2010, at 8:10 PM, Daniel Johnson wrote: On Jun 7, 2010, at 10:56 AM, Koen van der Drift wrote: If anyone wants to fix and/or take over my module-build packages, feel free to do so, I really don't have time right now to dig into this. I took them over a while ago, because they were needed by another package I maintain, but I have not enough knowledge to understand and fix this issue. I just committed a fix for this. It was only a problem with 5100 on 10.5/ppc, which I can't test. Please let me know if it fixes things for you. Daniel Daniel, Thanks for the fix, it works now. I did get a 'node already exists' error for perl5100-core, but was able to solve that following the FAQ. - Koen. -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
[Fink-devel] How to remove a certain group of packages
Hi, Is there a way to remove a certain group of packages in fink? For instance, all packages that I maintain, or all installed perlmodules? I can list them: fink list --installed -m 'driftkop' or fink list --installed | grep pm588 But then how to proceed? Thanks, - Koen. -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
[Fink-devel] abstract method called directly! error
Hi,
I am getting the following error with one of my perlmodules:
make test || exit 2
PERL_DL_NONLAZY=1 /usr/bin/perl5.8.8 -MExtUtils::Command::MM -e
test_harness(0, 'blib/lib', 'blib/arch') t/*.t t/compat/*.t
abstract method called directly! at /sw/src/fink.build/tap-parser-
pm588-0.54-1/TAP-Parser-0.54/blib/lib/TAP/Parser.pm line 1189
TAP::Parser::__ANON__() called at /sw/src/fink.build/tap-parser-
pm588-0.54-1/TAP-Parser-0.54/blib/lib/TAP/Parser.pm line 240
TAP::Parser::next('TAP::Parser=HASH(0x891714)') called at /sw/lib/
perl5/5.8.8/TAP/Harness.pm line 548
TAP::Harness::_aggregate_single('TAP::Harness=HASH(0x8111cc)',
'TAP::Parser::Aggregator=HASH(0x810fbc)',
'TAP::Parser::Scheduler=HASH(0x892c94)') called at /sw/lib/perl5/5.8.8/
TAP/Harness.pm line 638
TAP::Harness::aggregate_tests('TAP::Harness=HASH(0x8111cc)',
'TAP::Parser::Aggregator=HASH(0x810fbc)', 't/000-load.t', 't/010-
base.t', 't/020-regression.t', 't/030-grammar.t', 't/040-parse.t', 't/
050-bailout.t', 't/060-errors.t', ...) called at /sw/lib/perl5/5.8.8/
Test/Harness.pm line 152
Test::Harness::_aggregate_tests('TAP::Harness=HASH(0x8111cc)',
'TAP::Parser::Aggregator=HASH(0x810fbc)', 't/000-load.t', 't/010-
base.t', 't/020-regression.t', 't/030-grammar.t', 't/040-parse.t', 't/
050-bailout.t', 't/060-errors.t', ...) called at /sw/lib/perl5/5.8.8/
Test/Harness.pm line 134
Test::Harness::_aggregate('TAP::Harness=HASH(0x8111cc)',
'TAP::Parser::Aggregator=HASH(0x810fbc)', 't/000-load.t', 't/010-
base.t', 't/020-regression.t', 't/030-grammar.t', 't/040-parse.t', 't/
050-bailout.t', 't/060-errors.t', ...) called at /sw/lib/perl5/5.8.8/
Test/Harness.pm line 166
Test::Harness::runtests('t/000-load.t', 't/010-base.t', 't/020-
regression.t', 't/030-grammar.t', 't/040-parse.t', 't/050-bailout.t',
't/060-errors.t', 't/070-streams.t', 't/080-aggregator.t', ...) called
at /sw/lib/perl5/5.8.8/ExtUtils/Command/MM.pm line 62
ExtUtils::Command::MM::test_harness(0, 'blib/lib', 'blib/arch')
called at -e line 1
at /sw/src/fink.build/tap-parser-pm588-0.54-1/TAP-Parser-0.54/blib/
lib/TAP/Parser.pm line 1189
make: *** [test_dynamic] Error 25
### execution of make failed, exit code 2
### execution of /var/tmp/tmp.5.2kv8XB failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-tap-parser-pm588-0.54-1
(Reading database ... 161098 files and directories currently installed.)
Removing fink-buildlock-tap-parser-pm588-0.54-1 ...
Failed: phase test: error (2)
Any ideas what this could be?
Thanks,
- Koen.
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Re: [Fink-devel] abstract method called directly! error
On Jun 6, 2010, at 11:13 AM, Daniel Macks wrote: ccording to CPAN search, TAP::Parser is now (not sure as of how recently) part of the Test::Harness distro, and the Tap::Parser docs say the goal of that package was to eventually migrate into Test::Harness. Do we still need a stand-alone actual tap-parser-pmXXX for that module or should that package become an obsolete dummy bundle that just depends on test-parser-pmXXX? As far as I can see no other package uses tap-parser right now. I guess I added it because of another package that I was worlking on but never got submitted. Unless I am overseeing something, and tap-parser *is* being used, I am happy to remove it from fink. - Koen. -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] How to remove a certain group of packages
On Jun 6, 2010, at 7:45 AM, Martin Costabel wrote:
For example (1 line)
sudo dpkg -r --force-all `fink list -i -m 'driftkop' | awk '{print
$2}'`
Excellent, thanks!
- Koen.
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[Fink-devel] arch: Unknown architecture: powerpc error on PPC
Hi, I am trying to update most of my perlmodules to include the -pm5100 variant. For module-build-pm5100, I now get the following error: sudo -u fink-bld [ENV] sh -c/var/tmp/tmp.38.5B2RQl /var/tmp/tmp.0.Ld9wPl + exec + perlversion=5.10.0 + perlexe=perl5.10.0 + '[' 5100 = 5100 ']' + perlexe='/usr/bin/arch -powerpc perl5.10.0' ++ /usr/bin/arch -powerpc perl5.10.0 -V:archname arch: Unknown architecture: powerpc + eval '' + /usr/bin/arch -powerpc perl5.10.0 Build.PL --install_path arch=/sw/ src/fink.build/root-module-build-pm5100-0.36.07-1/sw/lib/perl5/5.10.0/ --install_path bin=/sw/src/fink.build/root-module-build- pm5100-0.36.07-1/sw/bin --install_path bindoc=/sw/src/fink.build/root- module-build-pm5100-0.36.07-1/sw/lib/perl5/5.10.0/man/man1 -- install_path lib=/sw/src/fink.build/root-module-build-pm5100-0.36.07-1/ sw/lib/perl5/5.10.0 --install_path libdoc=/sw/src/fink.build/root- module-build-pm5100-0.36.07-1/sw/lib/perl5/5.10.0/man/man3 -- install_path script=/sw/src/fink.build/root-module-build- pm5100-0.36.07-1/sw/lib/module-build-pm5100/ arch: Unknown architecture: powerpc ### execution of /var/tmp/tmp.0.Ld9wPl failed, exit code 1 ### execution of /var/tmp/tmp.38.5B2RQl failed, exit code 1 In this case -5100 was not added by me, so I never tested and seen this before. For -pm588, I get the following and no errors: sudo -u fink-bld [ENV] sh -c/var/tmp/tmp.2.Ri67M2 /var/tmp/tmp.0.NOcwEP + exec + perlversion=5.8.8 + perlexe=perl5.8.8 + '[' 588 = 5100 ']' ++ perl5.8.8 -V:archname + eval 'archname='\''darwin-thread-multi-2level'\'';' ++ archname=darwin-thread-multi-2level Any suggestions on how to fix this? Thanks, - Koen. -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] Algorithm::C3 Dependency Loop
Ben, Please go ahead and add the patch. Can you also add the -5100 variants to your packages sub-exporter-pm and class-inspector-pm? - Koen. On Tue, Jun 1, 2010 at 10:36 AM, Benjamin Reed rangerr...@befunk.com wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Algorithm::C3 BuildDepends on Module::Build, but Module::Build pulls in Algorithm::C3. This works on 10.6, where a version of Module::Build already exists in the default Perl install, but not elsewhere. I've got a small patch that adds a Makefile.PL and uses the default Perl install instead, mind if I commit? - -- Benjamin Reed a.k.a. Ranger Rick a.k.a. Raccoon Fink Fink, KDE, and Mac OS X development Blog: http://www.raccoonfink.com/ Music: http://music.raccoonfink.com/ -BEGIN PGP SIGNATURE- Version: GnuPG/MacGPG2 v2.0.12 (Darwin) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iD8DBQFMBRsCUu+jZtP2Zf4RAi/uAJ4/hcbpjixHeV7tNLaQByB7Ug8b6QCdGLY3 +3dN/LIdpm+CnnBxcFq3SoU= =O3F8 -END PGP SIGNATURE- -- ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] gmp build failure
I'm still getting the same error with the latest version. - Koen. On May 9, 2010, at 10:00 PM, David Fang wrote: I found the following thread on this: http://gmplib.org/list-archives/gmp-bugs/2010-January/001838.html which suggests using the newer xcode's gcc-4.2. What Depends can I specify to enforce this in gmp.info? -- ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] gmp build failure
On May 9, 2010, at 10:00 PM, David Fang wrote: which suggests using the newer xcode's gcc-4.2. What Depends can I specify to enforce this in gmp.info? This worked for me: SetCC: gcc-4.2 SetCXX: g++-4.2 and it builds without errors. - Koen. -- ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] linker error: ld: library not found for -lcrt1.10.5.o
On May 8, 2010, at 12:15 PM, Martin Costabel wrote:
Koen van der Drift wrote:
[]
I tried that, and now get the following error instead at the same
location:
Linking CXX executable massXpert.app/Contents/MacOS/massXpert
cd /sw/src/fink.build/massxpert-x11-2.1.0-1001/massxpert-2.1.0/gui
/sw/bin/cmake -E cmake_link_script CMakeFiles/massXpert.dir/
link.txt --verbose=1
/sw/var/lib/fink/path-prefix-g++-4.0/c++-mmacosx-version-
min=10.3 -fvisibility-inlines-hidden -isysroot /Developer/SDKs/
MacOSX10.4u.sdk
OK, the -mmacosx-version-min=10.5 is gone, but -mmacosx-version-
min=10.3 is still there, and -isysroot /Developer/SDKs/
MacOSX10.4u.sdk too.
I don't know if these have anything to do with the error you are
seeing now, though.
[]
QtXml -framework QtSvg -Wl,-all_load ../lib/libmasslib.a -Wl,-
noall_load -framework QtGui -framework QtCore ../lib/libmasslib.a
ld warning: option -noall_load is obsolete and being ignored
Undefined symbols:
_CFRelease, referenced from:
massXpert::ConfigSettings::initializeSystemConfig() in
[]
Looks like a missing -framework CoreFoundation. No idea who should
have brought this in and didn't.
And, indeed, I don't have /Developer/SDKs/MacOSX10.4u.sdk/usr/lib/
crt1.10.5.o but have /Developer/SDKs/MacOSX10.4u.sdk/usr/lib/crt1.o .
That's why removing -mmacosx-version-min=10.5 worked (for your first
error, at least).
--
Martin
Just a quick update, I tried several things yesterday, adding SetLIBS:
-framework CoreFoundation, patching the CMakeLists.txt file to set -
mmacosx-version-min=10.4:
# We want to build universal binaries
-SET (CMAKE_OSX_ARCHITECTURES ppc;i386
- CACHE STRING Build architectures for OSX FORCE)
+#SET (CMAKE_OSX_ARCHITECTURES ppc;i386
+# CACHE STRING Build architectures for OSX FORCE)
# That can be deployed on older system
# (Qt 4.4.0 is available starting at 10.3.9)
-SET (CMAKE_CXX_FLAGS ${CMAKE_CXX_FLAGS} -mmacosx-version-min=10.3
+SET (CMAKE_CXX_FLAGS ${CMAKE_CXX_FLAGS} -mmacosx-version-min=10.4
CACHE STRING Flags used by the compiler during all build types.
FORCE)
Even removed the patch, but still get the same error.
Then this morning I read this in configsettings.cpp (from the link
error):
/* On Mac OS X, instead, the software is built using not cmake,
but qmake, and that makes it buildable using Xcode. The build
generates in this case a Mac Bundle massXpert.app, which
installs anywhere as long as its internal structure is
conserved. There is an API to identify from which location the
bundle is used(double-clicking onto the massXpert.app
icon). We use that API to get the bundle directory, which might
be something like /Applications/massXpert.app if the bundle was
dropped into /Applications.
*/
So, I will try using qmake and see if that makes any difference.
- Koen.
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Re: [Fink-devel] linker error: ld: library not found for -lcrt1.10.5.o
On May 8, 2010, at 12:15 PM, Martin Costabel wrote: Looks like a missing -framework CoreFoundation. No idea who should have brought this in and didn't. Got that sorted out by using: SetLDFLAGS: -Wl,-framework,CoreFoundation -Wl The package builds fine now. - Koen. -- ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
[Fink-devel] gmp build failure
Hi David, A recent update for gmp fails during the build, see the output below. Package manager version: 0.29.99.cvs Distribution version: selfupdate-cvs Sun May 9 20:35:56 2010, 10.5, powerpc hth, - Koen. -- ... /bin/sh ./libtool --mode=link gcc -std=gnu99 -O2 -pedantic -mpowerpc - no-cpp-precomp -force_cpusubtype_ALL -mcpu=970 -L/sw/lib -o libgmp.la -rpath /sw/lib -version-info 8:2:5 assert.lo compat.lo errno.lo extract-dbl.lo invalid.lo memory.lo mp_bpl.lo mp_clz_tab.lo mp_dv_tab.lo mp_minv_tab.lo mp_get_fns.lo mp_set_fns.lo rand.lo randclr.lo randdef.lo randiset.lo randlc2s.lo randlc2x.lo randmt.lo randmts.lo rands.lo randsd.lo randsdui.lo randbui.lo randmui.lo version.lo tal-reent.lo mpf/init.lo mpf/init2.lo mpf/set.lo mpf/ set_ui.lo mpf/set_si.lo mpf/set_str.lo mpf/set_d.lo mpf/set_z.lo mpf/ iset.lo mpf/iset_ui.lo mpf/iset_si.lo mpf/iset_str.lo mpf/iset_d.lo mpf/clear.lo mpf/get_str.lo mpf/dump.lo mpf/size.lo mpf/eq.lo mpf/ reldiff.lo mpf/sqrt.lo mpf/random2.lo mpf/inp_str.lo mpf/out_str.lo mpf/add.lo mpf/add_ui.lo mpf/sub.lo mpf/sub_ui.lo mpf/ui_sub.lo mpf/ mul.lo mpf/mul_ui.lo mpf/div.lo mpf/div_ui.lo mpf/cmp.lo mpf/cmp_d.lo mpf/cmp_ui.lo mpf/cmp_si.lo mpf/mul_2exp.lo mpf/div_2exp.lo mpf/abs.lo mpf/neg.lo mpf/set_q.lo mpf/get_d.lo mpf/get_d_2exp.lo mpf/ set_dfl_prec.lo mpf/set_prc.lo mpf/set_prc_raw.lo mpf/get_dfl_prec.lo mpf/get_prc.lo mpf/ui_div.lo mpf/sqrt_ui.lo mpf/ceilfloor.lo mpf/ trunc.lo mpf/pow_ui.lo mpf/urandomb.lo mpf/swap.lo mpf/fits_sint.lo mpf/fits_slong.lo mpf/fits_sshort.lo mpf/fits_uint.lo mpf/ fits_ulong.lo mpf/fits_ushort.lo mpf/get_si.lo mpf/get_ui.lo mpf/ int_p.lo mpz/abs.lo mpz/add.lo mpz/add_ui.lo mpz/aorsmul.lo mpz/ aorsmul_i.lo mpz/and.lo mpz/array_init.lo mpz/bin_ui.lo mpz/ bin_uiui.lo mpz/cdiv_q.lo mpz/cdiv_q_ui.lo mpz/cdiv_qr.lo mpz/ cdiv_qr_ui.lo mpz/cdiv_r.lo mpz/cdiv_r_ui.lo mpz/cdiv_ui.lo mpz/ cfdiv_q_2exp.lo mpz/cfdiv_r_2exp.lo mpz/clear.lo mpz/clrbit.lo mpz/ cmp.lo mpz/cmp_d.lo mpz/cmp_si.lo mpz/cmp_ui.lo mpz/cmpabs.lo mpz/ cmpabs_d.lo mpz/cmpabs_ui.lo mpz/com.lo mpz/combit.lo mpz/cong.lo mpz/ cong_2exp.lo mpz/cong_ui.lo mpz/divexact.lo mpz/divegcd.lo mpz/ dive_ui.lo mpz/divis.lo mpz/divis_ui.lo mpz/divis_2exp.lo mpz/dump.lo mpz/export.lo mpz/fac_ui.lo mpz/fdiv_q.lo mpz/fdiv_q_ui.lo mpz/ fdiv_qr.lo mpz/fdiv_qr_ui.lo mpz/fdiv_r.lo mpz/fdiv_r_ui.lo mpz/ fdiv_ui.lo mpz/fib_ui.lo mpz/fib2_ui.lo mpz/fits_sint.lo mpz/ fits_slong.lo mpz/fits_sshort.lo mpz/fits_uint.lo mpz/fits_ulong.lo mpz/fits_ushort.lo mpz/gcd.lo mpz/gcd_ui.lo mpz/gcdext.lo mpz/get_d.lo mpz/get_d_2exp.lo mpz/get_si.lo mpz/get_str.lo mpz/get_ui.lo mpz/ getlimbn.lo mpz/hamdist.lo mpz/import.lo mpz/init.lo mpz/init2.lo mpz/ inp_raw.lo mpz/inp_str.lo mpz/invert.lo mpz/ior.lo mpz/iset.lo mpz/ iset_d.lo mpz/iset_si.lo mpz/iset_str.lo mpz/iset_ui.lo mpz/jacobi.lo mpz/kronsz.lo mpz/kronuz.lo mpz/kronzs.lo mpz/kronzu.lo mpz/lcm.lo mpz/ lcm_ui.lo mpz/lucnum_ui.lo mpz/lucnum2_ui.lo mpz/millerrabin.lo mpz/ mod.lo mpz/mul.lo mpz/mul_2exp.lo mpz/mul_si.lo mpz/mul_ui.lo mpz/ n_pow_ui.lo mpz/neg.lo mpz/nextprime.lo mpz/out_raw.lo mpz/out_str.lo mpz/perfpow.lo mpz/perfsqr.lo mpz/popcount.lo mpz/pow_ui.lo mpz/ powm.lo mpz/powm_ui.lo mpz/pprime_p.lo mpz/random.lo mpz/random2.lo mpz/realloc.lo mpz/realloc2.lo mpz/remove.lo mpz/root.lo mpz/ rootrem.lo mpz/rrandomb.lo mpz/scan0.lo mpz/scan1.lo mpz/set.lo mpz/ set_d.lo mpz/set_f.lo mpz/set_q.lo mpz/set_si.lo mpz/set_str.lo mpz/ set_ui.lo mpz/setbit.lo mpz/size.lo mpz/sizeinbase.lo mpz/sqrt.lo mpz/ sqrtrem.lo mpz/sub.lo mpz/sub_ui.lo mpz/swap.lo mpz/tdiv_ui.lo mpz/ tdiv_q.lo mpz/tdiv_q_2exp.lo mpz/tdiv_q_ui.lo mpz/tdiv_qr.lo mpz/ tdiv_qr_ui.lo mpz/tdiv_r.lo mpz/tdiv_r_2exp.lo mpz/tdiv_r_ui.lo mpz/ tstbit.lo mpz/ui_pow_ui.lo mpz/ui_sub.lo mpz/urandomb.lo mpz/ urandomm.lo mpz/xor.lo mpq/abs.lo mpq/aors.lo mpq/canonicalize.lo mpq/ clear.lo mpq/cmp.lo mpq/cmp_si.lo mpq/cmp_ui.lo mpq/div.lo mpq/ get_d.lo mpq/get_den.lo mpq/get_num.lo mpq/get_str.lo mpq/init.lo mpq/ inp_str.lo mpq/inv.lo mpq/md_2exp.lo mpq/mul.lo mpq/neg.lo mpq/ out_str.lo mpq/set.lo mpq/set_den.lo mpq/set_num.lo mpq/set_si.lo mpq/ set_str.lo mpq/set_ui.lo mpq/equal.lo mpq/set_z.lo mpq/set_d.lo mpq/ set_f.lo mpq/swap.lo mpn/fib_table.lo mpn/mp_bases.lo mpn/add.lo mpn/ add_1.lo mpn/add_n.lo mpn/sub.lo mpn/sub_1.lo mpn/sub_n.lo mpn/ neg_n.lo mpn/mul_1.lo mpn/addmul_1.lo mpn/submul_1.lo mpn/lshift.lo mpn/rshift.lo mpn/dive_1.lo mpn/diveby3.lo mpn/divis.lo mpn/divrem.lo mpn/divrem_1.lo mpn/divrem_2.lo mpn/fib2_ui.lo mpn/mod_1.lo mpn/ mod_34lsub1.lo mpn/mode1o.lo mpn/pre_divrem_1.lo mpn/pre_mod_1.lo mpn/ dump.lo mpn/mod_1_1.lo mpn/mod_1_2.lo mpn/mod_1_3.lo mpn/mod_1_4.lo mpn/mul.lo mpn/mul_fft.lo mpn/mul_n.lo mpn/mul_basecase.lo mpn/ sqr_basecase.lo mpn/random.lo mpn/random2.lo mpn/pow_1.lo mpn/ rootrem.lo mpn/sqrtrem.lo mpn/get_str.lo mpn/set_str.lo mpn/scan0.lo mpn/scan1.lo mpn/popcount.lo
[Fink-devel] linker error: ld: library not found for -lcrt1.10.5.o
Hi, As posted earlier this week on IRC, I am getting the following linker error: Linking CXX executable massXpert.app/Contents/MacOS/massXpert cd /sw/src/fink.build/massxpert-x11-2.1.0-1001/massxpert-2.1.0/gui / sw/bin/cmake -E cmake_link_script CMakeFiles/massXpert.dir/link.txt -- verbose=1 /sw/var/lib/fink/path-prefix-g++-4.0/c++-mmacosx-version-min=10.3 - fvisibility-inlines-hidden -isysroot /Developer/SDKs/MacOSX10.4u.sdk - mmacosx-version-min=10.5 -Wl,-search_paths_first - headerpad_max_install_names -L/sw/lib CMakeFiles/massXpert.dir/ aboutDlg.cpp.o CMakeFiles/massXpert.dir/application.cpp.o CMakeFiles/ massXpert.dir/atomDefDlg.cpp.o CMakeFiles/massXpert.dir/ calculatorChemPadDlg.cpp.o CMakeFiles/massXpert.dir/ calculatorChemPadGroupBox.cpp.o CMakeFiles/massXpert.dir/ calculatorRecorderDlg.cpp.o CMakeFiles/massXpert.dir/ calculatorWnd.cpp.o CMakeFiles/massXpert.dir/chemPadButton.cpp.o CMakeFiles/massXpert.dir/cleavageDlg.cpp.o CMakeFiles/massXpert.dir/ cleaveOligomerTreeView.cpp.o CMakeFiles/massXpert.dir/ cleaveOligomerTreeViewItem.cpp.o CMakeFiles/massXpert.dir/ cleaveOligomerTreeViewMimeData.cpp.o CMakeFiles/massXpert.dir/ cleaveOligomerTreeViewModel.cpp.o CMakeFiles/massXpert.dir/ cleaveOligomerTreeViewSortProxyModel.cpp.o CMakeFiles/massXpert.dir/ cleaveSpecDefDlg.cpp.o CMakeFiles/massXpert.dir/compositionsDlg.cpp.o CMakeFiles/massXpert.dir/compositionTreeView.cpp.o CMakeFiles/ massXpert.dir/compositionTreeViewItem.cpp.o CMakeFiles/massXpert.dir/ compositionTreeViewModel.cpp.o CMakeFiles/massXpert.dir/ compositionTreeViewSortProxyModel.cpp.o CMakeFiles/massXpert.dir/ configurationSettingsDlg.cpp.o CMakeFiles/massXpert.dir/ crossLinkerDefDlg.cpp.o CMakeFiles/massXpert.dir/ decimalPlacesOptionsDlg.cpp.o CMakeFiles/massXpert.dir/ fragmentationDlg.cpp.o CMakeFiles/massXpert.dir/ fragmentOligomerTreeView.cpp.o CMakeFiles/massXpert.dir/ fragmentOligomerTreeViewItem.cpp.o CMakeFiles/massXpert.dir/ fragmentOligomerTreeViewMimeData.cpp.o CMakeFiles/massXpert.dir/ fragmentOligomerTreeViewModel.cpp.o CMakeFiles/massXpert.dir/ fragmentOligomerTreeViewSortProxyModel.cpp.o CMakeFiles/massXpert.dir/ fragSpecDefDlg.cpp.o CMakeFiles/massXpert.dir/ isotopicPatternCalculationDlg.cpp.o CMakeFiles/massXpert.dir/ main.cpp.o CMakeFiles/massXpert.dir/mainWindow.cpp.o CMakeFiles/ massXpert.dir/massSearchDlg.cpp.o CMakeFiles/massXpert.dir/ massSearchOligomerTreeView.cpp.o CMakeFiles/massXpert.dir/ massSearchOligomerTreeViewItem.cpp.o CMakeFiles/massXpert.dir/ massSearchOligomerTreeViewMimeData.cpp.o CMakeFiles/massXpert.dir/ massSearchOligomerTreeViewModel.cpp.o CMakeFiles/massXpert.dir/ massSearchOligomerTreeViewSortProxyModel.cpp.o CMakeFiles/ massXpert.dir/modifDefDlg.cpp.o CMakeFiles/massXpert.dir/ monomerCodeEvaluator.cpp.o CMakeFiles/massXpert.dir/ monomerCrossLinkDlg.cpp.o CMakeFiles/massXpert.dir/monomerDefDlg.cpp.o CMakeFiles/massXpert.dir/monomerModificationDlg.cpp.o CMakeFiles/ massXpert.dir/mzCalculationDlg.cpp.o CMakeFiles/massXpert.dir/ mzCalculationTreeView.cpp.o CMakeFiles/massXpert.dir/ mzCalculationTreeViewItem.cpp.o CMakeFiles/massXpert.dir/ mzCalculationTreeViewModel.cpp.o CMakeFiles/massXpert.dir/ mzCalculationTreeViewSortProxyModel.cpp.o CMakeFiles/massXpert.dir/ mzLabInputOligomerTreeView.cpp.o CMakeFiles/massXpert.dir/ mzLabInputOligomerTreeViewDlg.cpp.o CMakeFiles/massXpert.dir/ mzLabInputOligomerTreeViewItem.cpp.o CMakeFiles/massXpert.dir/ mzLabInputOligomerTreeViewModel.cpp.o CMakeFiles/massXpert.dir/ mzLabInputOligomerTreeViewSortProxyModel.cpp.o CMakeFiles/ massXpert.dir/mzLabOutputOligomerTreeView.cpp.o CMakeFiles/ massXpert.dir/mzLabOutputOligomerTreeViewDlg.cpp.o CMakeFiles/ massXpert.dir/mzLabOutputOligomerTreeViewItem.cpp.o CMakeFiles/ massXpert.dir/mzLabOutputOligomerTreeViewModel.cpp.o CMakeFiles/ massXpert.dir/mzLabOutputOligomerTreeViewSortProxyModel.cpp.o CMakeFiles/massXpert.dir/mzLabWnd.cpp.o CMakeFiles/massXpert.dir/ pkaPhPiDlg.cpp.o CMakeFiles/massXpert.dir/polChemDefWnd.cpp.o CMakeFiles/massXpert.dir/polymerModificationDlg.cpp.o CMakeFiles/ massXpert.dir/regionSelection.cpp.o CMakeFiles/massXpert.dir/ sequenceEditorFindDlg.cpp.o CMakeFiles/massXpert.dir/ sequenceEditorGraphicsView.cpp.o CMakeFiles/massXpert.dir/ sequenceEditorGraphicsViewKeyboardHandling.cpp.o CMakeFiles/ massXpert.dir/sequenceEditorGraphicsViewKeySequenceHandling.cpp.o CMakeFiles/massXpert.dir/sequenceEditorWnd.cpp.o CMakeFiles/ massXpert.dir/sequencePurificationDlg.cpp.o CMakeFiles/massXpert.dir/ sequenceSelection.cpp.o CMakeFiles/massXpert.dir/moc_aboutDlg.cxx.o CMakeFiles/massXpert.dir/moc_application.cxx.o CMakeFiles/ massXpert.dir/moc_atomDefDlg.cxx.o CMakeFiles/massXpert.dir/ moc_calculatorChemPadDlg.cxx.o CMakeFiles/massXpert.dir/ moc_calculatorChemPadGroupBox.cxx.o CMakeFiles/massXpert.dir/ moc_calculatorRecorderDlg.cxx.o CMakeFiles/massXpert.dir/ moc_calculatorWnd.cxx.o CMakeFiles/massXpert.dir/
Re: [Fink-devel] linker error: ld: library not found for -lcrt1.10.5.o
On May 8, 2010, at 7:59 AM, Martin Costabel wrote: The -isysroot flag. You probably don't have /Developer/SDKs/ MacOSX10.4u.sdk/usr/lib/crt1.10.5.o Unfortunately, cmake is trying successfully to out-bloat the autotools-based build system. In 2.8 they added this -isysroot garbage as default on MacOSX. If one doesn't want to build a universal binary, one now needs to get rid of the -isysroot flag and to remove the -mmacosx-version-min crap, too. With cmake, you can do this by adding the two options -DCMAKE_OSX_DEPLOYMENT_TARGET:STRING= \ -DCMAKE_OSX_SYSROOT:PATH=/ \ to the cmake command line. I haven't tested this for massXpert on OSX 10.5, but I had to do it also for scribus135-aqua in order to make it build on OSX 10.4. Martin, I tried that, and now get the following error instead at the same location: Linking CXX executable massXpert.app/Contents/MacOS/massXpert cd /sw/src/fink.build/massxpert-x11-2.1.0-1001/massxpert-2.1.0/gui / sw/bin/cmake -E cmake_link_script CMakeFiles/massXpert.dir/link.txt -- verbose=1 /sw/var/lib/fink/path-prefix-g++-4.0/c++-mmacosx-version-min=10.3 - fvisibility-inlines-hidden -isysroot /Developer/SDKs/MacOSX10.4u.sdk - Wl,-search_paths_first -headerpad_max_install_names -L/sw/lib CMakeFiles/massXpert.dir/aboutDlg.cpp.o CMakeFiles/massXpert.dir/ application.cpp.o CMakeFiles/massXpert.dir/atomDefDlg.cpp.o CMakeFiles/ massXpert.dir/calculatorChemPadDlg.cpp.o CMakeFiles/massXpert.dir/ calculatorChemPadGroupBox.cpp.o CMakeFiles/massXpert.dir/ calculatorRecorderDlg.cpp.o CMakeFiles/massXpert.dir/ calculatorWnd.cpp.o CMakeFiles/massXpert.dir/chemPadButton.cpp.o CMakeFiles/massXpert.dir/cleavageDlg.cpp.o CMakeFiles/massXpert.dir/ cleaveOligomerTreeView.cpp.o CMakeFiles/massXpert.dir/ cleaveOligomerTreeViewItem.cpp.o CMakeFiles/massXpert.dir/ cleaveOligomerTreeViewMimeData.cpp.o CMakeFiles/massXpert.dir/ cleaveOligomerTreeViewModel.cpp.o CMakeFiles/massXpert.dir/ cleaveOligomerTreeViewSortProxyModel.cpp.o CMakeFiles/massXpert.dir/ cleaveSpecDefDlg.cpp.o CMakeFiles/massXpert.dir/compositionsDlg.cpp.o CMakeFiles/massXpert.dir/compositionTreeView.cpp.o CMakeFiles/ massXpert.dir/compositionTreeViewItem.cpp.o CMakeFiles/massXpert.dir/ compositionTreeViewModel.cpp.o CMakeFiles/massXpert.dir/ compositionTreeViewSortProxyModel.cpp.o CMakeFiles/massXpert.dir/ configurationSettingsDlg.cpp.o CMakeFiles/massXpert.dir/ crossLinkerDefDlg.cpp.o CMakeFiles/massXpert.dir/ decimalPlacesOptionsDlg.cpp.o CMakeFiles/massXpert.dir/ fragmentationDlg.cpp.o CMakeFiles/massXpert.dir/ fragmentOligomerTreeView.cpp.o CMakeFiles/massXpert.dir/ fragmentOligomerTreeViewItem.cpp.o CMakeFiles/massXpert.dir/ fragmentOligomerTreeViewMimeData.cpp.o CMakeFiles/massXpert.dir/ fragmentOligomerTreeViewModel.cpp.o CMakeFiles/massXpert.dir/ fragmentOligomerTreeViewSortProxyModel.cpp.o CMakeFiles/massXpert.dir/ fragSpecDefDlg.cpp.o CMakeFiles/massXpert.dir/ isotopicPatternCalculationDlg.cpp.o CMakeFiles/massXpert.dir/ main.cpp.o CMakeFiles/massXpert.dir/mainWindow.cpp.o CMakeFiles/ massXpert.dir/massSearchDlg.cpp.o CMakeFiles/massXpert.dir/ massSearchOligomerTreeView.cpp.o CMakeFiles/massXpert.dir/ massSearchOligomerTreeViewItem.cpp.o CMakeFiles/massXpert.dir/ massSearchOligomerTreeViewMimeData.cpp.o CMakeFiles/massXpert.dir/ massSearchOligomerTreeViewModel.cpp.o CMakeFiles/massXpert.dir/ massSearchOligomerTreeViewSortProxyModel.cpp.o CMakeFiles/ massXpert.dir/modifDefDlg.cpp.o CMakeFiles/massXpert.dir/ monomerCodeEvaluator.cpp.o CMakeFiles/massXpert.dir/ monomerCrossLinkDlg.cpp.o CMakeFiles/massXpert.dir/monomerDefDlg.cpp.o CMakeFiles/massXpert.dir/monomerModificationDlg.cpp.o CMakeFiles/ massXpert.dir/mzCalculationDlg.cpp.o CMakeFiles/massXpert.dir/ mzCalculationTreeView.cpp.o CMakeFiles/massXpert.dir/ mzCalculationTreeViewItem.cpp.o CMakeFiles/massXpert.dir/ mzCalculationTreeViewModel.cpp.o CMakeFiles/massXpert.dir/ mzCalculationTreeViewSortProxyModel.cpp.o CMakeFiles/massXpert.dir/ mzLabInputOligomerTreeView.cpp.o CMakeFiles/massXpert.dir/ mzLabInputOligomerTreeViewDlg.cpp.o CMakeFiles/massXpert.dir/ mzLabInputOligomerTreeViewItem.cpp.o CMakeFiles/massXpert.dir/ mzLabInputOligomerTreeViewModel.cpp.o CMakeFiles/massXpert.dir/ mzLabInputOligomerTreeViewSortProxyModel.cpp.o CMakeFiles/ massXpert.dir/mzLabOutputOligomerTreeView.cpp.o CMakeFiles/ massXpert.dir/mzLabOutputOligomerTreeViewDlg.cpp.o CMakeFiles/ massXpert.dir/mzLabOutputOligomerTreeViewItem.cpp.o CMakeFiles/ massXpert.dir/mzLabOutputOligomerTreeViewModel.cpp.o CMakeFiles/ massXpert.dir/mzLabOutputOligomerTreeViewSortProxyModel.cpp.o CMakeFiles/massXpert.dir/mzLabWnd.cpp.o CMakeFiles/massXpert.dir/ pkaPhPiDlg.cpp.o CMakeFiles/massXpert.dir/polChemDefWnd.cpp.o CMakeFiles/massXpert.dir/polymerModificationDlg.cpp.o CMakeFiles/ massXpert.dir/regionSelection.cpp.o CMakeFiles/massXpert.dir/ sequenceEditorFindDlg.cpp.o CMakeFiles/massXpert.dir/
[Fink-devel] package without a tarball
Hi, I am working on a package that doesn't have a tarball, just a cvs checkout. What's the recommended way to use this for a fink package? I can get the source, compress it myself, and then store it on a fink mirror, I think other packages do that too. If so, where exactly should it go? Thanks, - Koen. -- ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
[Fink-devel] libffi build failure
This is on Package manager version: 0.29.99.cvs
Distribution version: selfupdate-cvs Sun May 2 10:42:27 2010, 10.5,
powerpc
Thanks,
- Koen.
Making a new site.exp file...
srcdir=`CDPATH=${ZSH_VERSION+.}: cd . pwd`; export srcdir; \
EXPECT=`if [ -f ../../expect/expect ] ; then echo ../../expect/
expect ; else echo expect ; fi`; export EXPECT; \
runtest=`if [ -f ../../dejagnu/runtest ] ; then echo ../../dejagnu/
runtest ; else echo runtest; fi`; \
if /bin/sh -c $runtest --version /dev/null 21; then \
exit_status=0; l='libffi'; for tool in $l; do \
if $runtest --tool $tool --srcdir $srcdir ; \
then :; else exit_status=1; fi; \
done; \
else echo WARNING: could not find \`runtest' 12; :;\
fi; \
exit $exit_status
WARNING: Couldn't find the global config file.
WARNING: Couldn't find tool init file
Test Run By fink-bld on Sun May 2 11:27:42 2010
Native configuration is powerpc-apple-darwin9.8.0
=== libffi tests ===
Schedule of variations:
unix
Running target unix
Using /sw/share/dejagnu/baseboards/unix.exp as board description file
for target.
Using /sw/share/dejagnu/config/unix.exp as generic interface file for
target.
Using /sw/src/fink.build/libffi-3.0.9-3/libffi-3.0.9/testsuite/config/
default.exp as tool-and-target-specific interface file.
Running /sw/src/fink.build/libffi-3.0.9-3/libffi-3.0.9/testsuite/
libffi.call/call.exp ...
FAIL: libffi.call/cls_double_va.c -O0 -W -Wall output pattern test, is
-0.0
res: 5
7.0
res: 4
? should match 7.0
?es: 4
?.0
res: 4
FAIL: libffi.call/cls_longdouble_va.c -O0 -W -Wall output pattern
test, is -0.0
res: 5
7.0
res: 4
? should match 7.0
?es: 4
?.0
res: 4
FAIL: libffi.call/nested_struct5.c -O0 -W -Wall execution test
FAIL: libffi.call/cls_double_va.c -O2 output pattern test, is -0.0
res: 5
7.0
res: 4
? should match 7.0
?es: 4
?.0
res: 4
FAIL: libffi.call/cls_longdouble_va.c -O2 output pattern test, is -0.0
res: 5
7.0
res: 4
? should match 7.0
?es: 4
?.0
res: 4
FAIL: libffi.call/nested_struct5.c -O2 execution test
FAIL: libffi.call/cls_double_va.c -O3 output pattern test, is -0.0
res: 5
7.0
res: 4
? should match 7.0
?es: 4
?.0
res: 4
FAIL: libffi.call/cls_longdouble_va.c -O3 output pattern test, is -0.0
res: 5
7.0
res: 4
? should match 7.0
?es: 4
?.0
res: 4
FAIL: libffi.call/cls_double_va.c -Os output pattern test, is -0.0
res: 5
7.0
res: 4
? should match 7.0
?es: 4
?.0
res: 4
FAIL: libffi.call/cls_longdouble_va.c -Os output pattern test, is -0.0
res: 5
7.0
res: 4
? should match 7.0
?es: 4
?.0
res: 4
FAIL: libffi.call/nested_struct5.c -Os execution test
FAIL: libffi.call/cls_double_va.c -O2 -fomit-frame-pointer output
pattern test, is -0.0
res: 5
7.0
res: 4
? should match 7.0
?es: 4
?.0
res: 4
FAIL: libffi.call/cls_longdouble_va.c -O2 -fomit-frame-pointer output
pattern test, is -0.0
res: 5
7.0
res: 4
? should match 7.0
?es: 4
?.0
res: 4
FAIL: libffi.call/nested_struct5.c -O2 -fomit-frame-pointer execution
test
Running /sw/src/fink.build/libffi-3.0.9-3/libffi-3.0.9/testsuite/
libffi.special/special.exp ...
=== libffi Summary ===
# of expected passes1606
# of unexpected failures14
# of expected failures 10
# of unsupported tests 15
make[2]: *** [check-DEJAGNU] Error 1
make[1]: *** [check-am] Error 2
make[1]: Target `check' not remade because of errors.
Making check in man
make[1]: Nothing to be done for `check'.
make[1]: Nothing to be done for `check-am'.
make: *** [check-recursive] Error 1
make: Target `check' not remade because of errors.
--
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Re: [Fink-devel] libffi build failure
Update: this only happens when building in maintainer mode (which I
was using for another package that needs libffi).
- Koen.
On May 2, 2010, at 11:34 AM, Koen van der Drift wrote:
This is on Package manager version: 0.29.99.cvs
Distribution version: selfupdate-cvs Sun May 2 10:42:27 2010, 10.5,
powerpc
Thanks,
- Koen.
Making a new site.exp file...
srcdir=`CDPATH=${ZSH_VERSION+.}: cd . pwd`; export srcdir; \
EXPECT=`if [ -f ../../expect/expect ] ; then echo ../../expect/
expect ; else echo expect ; fi`; export EXPECT; \
runtest=`if [ -f ../../dejagnu/runtest ] ; then echo ../../dejagnu/
runtest ; else echo runtest; fi`; \
if /bin/sh -c $runtest --version /dev/null 21; then \
exit_status=0; l='libffi'; for tool in $l; do \
if $runtest --tool $tool --srcdir $srcdir ; \
then :; else exit_status=1; fi; \
done; \
else echo WARNING: could not find \`runtest' 12; :;\
fi; \
exit $exit_status
WARNING: Couldn't find the global config file.
WARNING: Couldn't find tool init file
Test Run By fink-bld on Sun May 2 11:27:42 2010
Native configuration is powerpc-apple-darwin9.8.0
=== libffi tests ===
Schedule of variations:
unix
Running target unix
Using /sw/share/dejagnu/baseboards/unix.exp as board description
file for target.
Using /sw/share/dejagnu/config/unix.exp as generic interface file
for target.
Using /sw/src/fink.build/libffi-3.0.9-3/libffi-3.0.9/testsuite/
config/default.exp as tool-and-target-specific interface file.
Running /sw/src/fink.build/libffi-3.0.9-3/libffi-3.0.9/testsuite/
libffi.call/call.exp ...
FAIL: libffi.call/cls_double_va.c -O0 -W -Wall output pattern test,
is -0.0
res: 5
7.0
res: 4
? should match 7.0
?es: 4
?.0
res: 4
FAIL: libffi.call/cls_longdouble_va.c -O0 -W -Wall output pattern
test, is -0.0
res: 5
7.0
res: 4
? should match 7.0
?es: 4
?.0
res: 4
FAIL: libffi.call/nested_struct5.c -O0 -W -Wall execution test
FAIL: libffi.call/cls_double_va.c -O2 output pattern test, is -0.0
res: 5
7.0
res: 4
? should match 7.0
?es: 4
?.0
res: 4
FAIL: libffi.call/cls_longdouble_va.c -O2 output pattern test, is -0.0
res: 5
7.0
res: 4
? should match 7.0
?es: 4
?.0
res: 4
FAIL: libffi.call/nested_struct5.c -O2 execution test
FAIL: libffi.call/cls_double_va.c -O3 output pattern test, is -0.0
res: 5
7.0
res: 4
? should match 7.0
?es: 4
?.0
res: 4
FAIL: libffi.call/cls_longdouble_va.c -O3 output pattern test, is -0.0
res: 5
7.0
res: 4
? should match 7.0
?es: 4
?.0
res: 4
FAIL: libffi.call/cls_double_va.c -Os output pattern test, is -0.0
res: 5
7.0
res: 4
? should match 7.0
?es: 4
?.0
res: 4
FAIL: libffi.call/cls_longdouble_va.c -Os output pattern test, is -0.0
res: 5
7.0
res: 4
? should match 7.0
?es: 4
?.0
res: 4
FAIL: libffi.call/nested_struct5.c -Os execution test
FAIL: libffi.call/cls_double_va.c -O2 -fomit-frame-pointer output
pattern test, is -0.0
res: 5
7.0
res: 4
? should match 7.0
?es: 4
?.0
res: 4
FAIL: libffi.call/cls_longdouble_va.c -O2 -fomit-frame-pointer
output pattern test, is -0.0
res: 5
7.0
res: 4
? should match 7.0
?es: 4
?.0
res: 4
FAIL: libffi.call/nested_struct5.c -O2 -fomit-frame-pointer
execution test
Running /sw/src/fink.build/libffi-3.0.9-3/libffi-3.0.9/testsuite/
libffi.special/special.exp ...
=== libffi Summary ===
# of expected passes 1606
# of unexpected failures 14
# of expected failures10
# of unsupported tests15
make[2]: *** [check-DEJAGNU] Error 1
make[1]: *** [check-am] Error 2
make[1]: Target `check' not remade because of errors.
Making check in man
make[1]: Nothing to be done for `check'.
make[1]: Nothing to be done for `check-am'.
make: *** [check-recursive] Error 1
make: Target `check' not remade because of errors.
--
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Re: [Fink-devel] libffi build failure
On May 2, 2010, at 11:58 AM, Jean-François Mertens wrote: On 02 May 2010, at 17:52, Koen van der Drift wrote: Update: this only happens when building in maintainer mode You mean, 'fink --tests=on rebuild libffi' goes without errors ? No, that fails. As well as 'fink -l -m --build-as-nobody rebuild libffi' Just a 'fink rebuild libffi' works fine. - Koen. -- ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] libffi build failure
On May 2, 2010, at 12:54 PM, Jean-François Mertens wrote: Koen, in the meantime could you check that libffi-3.0.5.info yields correct self-tests for you ? That fails too (using fink --tests=on rebuild libffi-3.0.5): ... WARNING: Couldn't find the global config file. WARNING: Couldn't find tool init file Test Run By root on Sun May 2 13:12:04 2010 Native configuration is powerpc-apple-darwin9.8.0 === libffi tests === Schedule of variations: unix Running target unix Using /sw/share/dejagnu/baseboards/unix.exp as board description file for target. Using /sw/share/dejagnu/config/unix.exp as generic interface file for target. Using /sw/src/fink.build/libffi-3.0.5-3/libffi-3.0.5/testsuite/config/ default.exp as tool-and-target-specific interface file. Running /sw/src/fink.build/libffi-3.0.5-3/libffi-3.0.5/testsuite/ libffi.call/call.exp ... FAIL: libffi.call/nested_struct5.c -O0 -W -Wall execution test FAIL: libffi.call/nested_struct5.c -O2 execution test FAIL: libffi.call/nested_struct5.c -Os execution test FAIL: libffi.call/nested_struct5.c -O2 -fomit-frame-pointer execution test Running /sw/src/fink.build/libffi-3.0.5-3/libffi-3.0.5/testsuite/ libffi.special/special.exp ... === libffi Summary === # of expected passes1381 # of unexpected failures4 # of unsupported tests 15 make[2]: *** [check-DEJAGNU] Error 1 make[1]: *** [check-am] Error 2 make[1]: Target `check' not remade because of errors. -- ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
[Fink-devel] problems installing autoconf2.6-2.65-2
I can't seem to get past installing autoconf2.6-2.65-2, see below. I ran the commands at the end, installed autoconf2.6-2.65-2 manually, but then I keep getting the same output about the inconsistent dependencies. Any suggestions? Thanks, - Koen. ... The following 3 packages will be installed or updated: gnome-python2-py26 graphviz pysqlite2-py26 The following 38 additional packages will be installed: autoconf automake1.11 automake1.9 gnome-keyring-dev gnome-keyring- shlibs graphviz-shlibs gtkglext1 gtkglext1-shlibs gts75 gts75-shlibs guile18 guile18-dev guile18-libs guile18-shlibs libbonobo2 libbonobo2-dev libbonoboui2 libbonoboui2-dev libbonoboui2-shlibs libcroco3 libcroco3-shlibs libgcrypt libgcrypt-shlibs libgettext3-dev libgnome2 libgnome2-dev libgnome2- shlibs libgnomeui2-dev libgnomeui2-shlibs libgpg-error libgpg-error-shlibs libgsf1.114-dev libgsf1.114-shlibs libming1-dev libming1-shlibs librsvg2 librsvg2-shlibs libtool14 Do you want to continue? [Y/n] Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/unstable/main/binary-darwin- powerpc/devel/autoconf_2.63-3_darwin-powerpc.deb Selecting previously deselected package autoconf. dpkg: considering removing autoconf2.6 in favour of autoconf ... dpkg: yes, will remove autoconf2.6 in favour of autoconf. (Reading database ... 120979 files and directories currently installed.) Unpacking autoconf (from .../autoconf_2.63-3_darwin-powerpc.deb) ... install-info(autoconf.info): deleting entry `* Autoconf: (autoconf) ...' install-info(standards.info): deleting entry `* Standards: (standards) ...' install-info(standards.info): deleting empty section `GNU organization' Setting up autoconf (2.63-3) ... * Autoconf: (autoconf). Create source code configuration scripts. * Standards: (standards). GNU coding standards. install-info(/sw/share/info/standards.info): creating new section `GNU organization' Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/unstable/main/binary-darwin- powerpc/devel/autoconf2.6_2.65-2_darwin-powerpc.deb Selecting previously deselected package autoconf2.6. dpkg: considering removing autoconf in favour of autoconf2.6 ... dpkg: yes, will remove autoconf in favour of autoconf2.6. (Reading database ... 120985 files and directories currently installed.) Unpacking autoconf2.6 (from .../autoconf2.6_2.65-2_darwin- powerpc.deb) ... install-info(autoconf.info): deleting entry `* Autoconf: (autoconf) ...' install-info(standards.info): deleting entry `* Standards: (standards) ...' install-info(standards.info): deleting empty section `GNU organization' Setting up autoconf2.6 (2.65-2) ... * Autoconf: (autoconf). Create source code configuration scripts. * Standards: (standards). GNU coding standards. install-info(/sw/share/info/standards.info): creating new section `GNU organization' Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/unstable/main/binary-darwin- powerpc/devel/automake1.11_1.11.1-1_darwin-powerpc.deb Selecting previously deselected package automake1.11. (Reading database ... 120979 files and directories currently installed.) Unpacking automake1.11 (from .../automake1.11_1.11.1-1_darwin- powerpc.deb) ... Setting up automake1.11 (1.11.1-1) ... * Automake: (automake). Making GNU standards-compliant Makefiles. Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/unstable/main/binary-darwin- powerpc/devel/autoconf_2.63-3_darwin-powerpc.deb Selecting previously deselected package autoconf. dpkg: considering removing autoconf2.6 in favour of autoconf ... dpkg: yes, will remove autoconf2.6 in favour of autoconf. (Reading database ... 121119 files and directories currently installed.) Unpacking autoconf (from .../autoconf_2.63-3_darwin-powerpc.deb) ... install-info(autoconf.info): deleting entry `* Autoconf: (autoconf) ...' install-info(standards.info): deleting entry `* Standards: (standards) ...' install-info(standards.info): deleting empty section `GNU organization' Setting up autoconf (2.63-3) ... * Autoconf: (autoconf). Create source code configuration scripts. * Standards: (standards). GNU coding standards. install-info(/sw/share/info/standards.info): creating new section `GNU organization' Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/unstable/main/binary-darwin- powerpc/devel/automake1.9_1.9.6-5_darwin-powerpc.deb Selecting previously deselected package automake1.9. dpkg: considering removing automake1.11 in favour of automake1.9 ... dpkg: yes, will remove automake1.11 in favour of automake1.9. (Reading database ... 121125 files and directories currently installed.) Unpacking automake1.9 (from .../automake1.9_1.9.6-5_darwin- powerpc.deb) ... install-info(automake.info): deleting entry `* Automake:
Re: [Fink-devel] problems installing autoconf2.6-2.65-2
On May 2, 2010, at 8:17 PM, Alexander Hansen wrote: The fundamental problem here, as I see it, is that by rights autoconf* should be BuildDependsOnly-style packages which can be swapped out freely, but since automake* carry a Depends: on autoconf, this behavior is defeated. The only way around it that I know of is to build packages one (or a few) at a time. Yeah, I tried that. I am trying to install gnome-python2-py26, and manually installed all of it's dependencies. And now it's moving forward. Thanks, - Koen. -- ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] rasmol build error
Thanks, it works now. - Koen. On Apr 18, 2010, at 9:58 PM, Hanspeter Niederstrasser wrote: On 4/18/10 9:15 PM, Koen van der Drift wrote: Hi, After a fink update, rasmol rebuild, and I get the following error: gcc -o rasmol -Os -Wall -Wpointer-arith -no-cpp-precomp -L/usr/ X11/ lib rasmol.o molecule.o abstree.o cmndline.o command.o transfor.orender.o repres.o pixutils.o outfile.o script.oinfile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.omultiple.o vector.o wbrotate.o langsel_unix.o maps.o x11win.o -lm -lXi -lXext -lX11 ../external_packages/ CBFlib-0.8.1/lib/libcbf.a ../external_packages/CQRlib-1.0.3/ cqrlib.o ../external_packages/CVector-1.0.3/CVector.o ../ external_packages/NearTree-2.1.3/CNearTree.o ld warning: in ../external_packages/CVector-1.0.3/CVector.o, file is not of required architecture Undefined symbols: _CVectorCreate, referenced from: _CreateSurfaceBonds in molecule.o _CreateSurfaceBonds in molecule.o My mistake. The source files come with some prebuilt .o files, and I was removing them (or at least supposed to), but I was passing the wrong path to rm. Try again after a selfupdate. Hanspeter -- Download Intel#174; Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
[Fink-devel] rasmol build error
Hi, After a fink update, rasmol rebuild, and I get the following error: gcc -o rasmol -Os -Wall -Wpointer-arith -no-cpp-precomp -L/usr/X11/ lib rasmol.o molecule.o abstree.o cmndline.o command.o transfor.orender.o repres.o pixutils.o outfile.o script.oinfile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.omultiple.o vector.o wbrotate.o langsel_unix.o maps.o x11win.o -lm -lXi -lXext -lX11 ../external_packages/ CBFlib-0.8.1/lib/libcbf.a ../external_packages/CQRlib-1.0.3/ cqrlib.o../external_packages/CVector-1.0.3/CVector.o ../ external_packages/NearTree-2.1.3/CNearTree.o ld warning: in ../external_packages/CVector-1.0.3/CVector.o, file is not of required architecture Undefined symbols: _CVectorCreate, referenced from: _CreateSurfaceBonds in molecule.o _CreateSurfaceBonds in molecule.o _ApplyMapShow in command.o _CNearTreeInsert in CNearTree.o _CNearTreeInsert in CNearTree.o _CNearTreeInsert in CNearTree.o _CNearTreeImmediateInsert in CNearTree.o _CNearTreeImmediateInsert in CNearTree.o _CNearTreeFindFarthest in CNearTree.o _CNearTreeNearest in CNearTree.o _CNearTreeFindInSphere in CNearTree.o _CNearTreeFindTreeInSphere in CNearTree.o _CNearTreeFindTreeInSphere in CNearTree.o _CNearTreeFindOutSphere in CNearTree.o _CNearTreeFindTreeOutSphere in CNearTree.o _CNearTreeFindTreeOutSphere in CNearTree.o _CNearTreeFindInAnnulus in CNearTree.o _CNearTreeFindTreeInAnnulus in CNearTree.o _CNearTreeFindTreeInAnnulus in CNearTree.o _CNearTreeFindKNearest in CNearTree.o _CNearTreeFindKNearest in CNearTree.o _CNearTreeFindKNearest in CNearTree.o _CNearTreeFindKTreeNearest in CNearTree.o _CNearTreeFindKTreeNearest in CNearTree.o _CNearTreeFindKFarthest in CNearTree.o _CNearTreeFindKFarthest in CNearTree.o _CNearTreeFindKFarthest in CNearTree.o _CNearTreeFindKTreeFarthest in CNearTree.o _CNearTreeFindKTreeFarthest in CNearTree.o _CVectorClear, referenced from: _CNearTreeFindInSphere in CNearTree.o _CNearTreeFindInSphere in CNearTree.o _CNearTreeFindOutSphere in CNearTree.o _CNearTreeFindOutSphere in CNearTree.o _CNearTreeFindInAnnulus in CNearTree.o _CNearTreeFindInAnnulus in CNearTree.o _CNearTreeFindKNearest in CNearTree.o _CNearTreeFindKNearest in CNearTree.o _CNearTreeFindKFarthest in CNearTree.o _CNearTreeFindKFarthest in CNearTree.o _CVectorSetSize, referenced from: _CNearTreeCompleteDelayedInsert in CNearTree.o _CNearTreeCompleteDelayedInsert in CNearTree.o _CVectorSetFlags, referenced from: _CNearTreeSortIn in CNearTree.o _CNearTreeSortIn in CNearTree.o _CNearTreeSortIn in CNearTree.o _CNearTreeSortIn in CNearTree.o _CVectorGetElement, referenced from: _CNearTreeCompleteDelayedInsert in CNearTree.o _CNearTreeCompleteDelayedInsert in CNearTree.o _CNearTreeFindFarthest in CNearTree.o _CNearTreeNearest in CNearTree.o _CNearTreeFindInSphere in CNearTree.o _CNearTreeFindOutSphere in CNearTree.o _CNearTreeFindInAnnulus in CNearTree.o _CNearTreeFindKNearest in CNearTree.o _CNearTreeFindKNearest in CNearTree.o _CNearTreeFindKNearest in CNearTree.o _CNearTreeFindKNearest in CNearTree.o _CNearTreeFindKFarthest in CNearTree.o _CNearTreeFindKFarthest in CNearTree.o _CNearTreeFindKFarthest in CNearTree.o _CNearTreeFindKFarthest in CNearTree.o _CVectorAddElement, referenced from: _CNearTreeInsert in CNearTree.o _CNearTreeInsert in CNearTree.o _CNearTreeInsert in CNearTree.o _CNearTreeImmediateInsert in CNearTree.o _CNearTreeImmediateInsert in CNearTree.o _CNearTreeFindFarthest in CNearTree.o _CNearTreeNearest in CNearTree.o _CNearTreeFindInSphere in CNearTree.o _CNearTreeFindInSphere in CNearTree.o _CNearTreeFindInSphere in CNearTree.o _CNearTreeFindInSphere in CNearTree.o _CNearTreeFindInSphere in CNearTree.o _CNearTreeFindOutSphere in CNearTree.o _CNearTreeFindOutSphere in CNearTree.o _CNearTreeFindOutSphere in CNearTree.o _CNearTreeFindOutSphere in CNearTree.o _CNearTreeFindOutSphere in CNearTree.o _CNearTreeFindInAnnulus in CNearTree.o _CNearTreeFindInAnnulus in CNearTree.o _CNearTreeFindInAnnulus in CNearTree.o _CNearTreeFindInAnnulus in CNearTree.o _CNearTreeFindInAnnulus in CNearTree.o _CNearTreeSortIn in CNearTree.o _CNearTreeSortIn in CNearTree.o _CNearTreeSortIn in CNearTree.o _CNearTreeFindKNearest in CNearTree.o _CNearTreeFindKNearest in CNearTree.o _CNearTreeFindKNearest
Re: [Fink-devel] automated packaging for building from svn
On Thu, Apr 15, 2010 at 1:26 PM, Alexander Hansen alexanderk.han...@gmail.com wrote: If we were to decide to give fink the ability to do checkouts from repositories, from a support standpoint a scheme that uses the current pull svn will be harder to debug than a scheme which checks out a defined revision number. In the latter case, a developer can just try to build/install a package as usual to confirm a problem, and I don't see that as particularly easy if packages build against current svn. Should we be aware of packages that have lots of svn updates, resulting in constant building of packages? - Koen. -- Download Intel#174; Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] RuntimeVars
A quick glance, I notice two things: 1st: Version: 0.0svn Revision: 8062 Is this conforming the fink rules? 2nd: DescUsage: Download TeX-Font Metric (*.tfm), psfonts.map from ctan.org, put in $HOME. On terminal type the commands -- cp /sw/share/doc/extex/homefile/.extex ~/. extex -- Can you put those two files in the package, I believe they were there before? - Koen. On Wed, Mar 31, 2010 at 4:04 PM, Hariharan B harihara...@iiitb.net wrote: Ah, you're right. Sorry about that. Fixed it now. Please check. On Thu, Apr 1, 2010 at 1:14 AM, Alexander Hansen alexanderk.han...@gmail.com wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Why exactly are you putting the PDF document in the man directory? It's not a manpage. Why isn't it in %i/share/doc/%n, which is a more standard location for documentation ? On 3/31/10 3:38 PM, Hariharan B wrote: Hi, As suggested, I've made the following changes. 1. Placed ExTex related jars inside %i/lib/%n 2. Removed RuntimeVars field. As benjamin suggested, startup script can find jars and JAVA_HOME is set inside that. 3. PDF that can be a manual for the user is placed inside %i/share/man/%n/. 4. The tarball contains the name extex-0.0svn and revision is 8062. Tested with fink -m --build-as-nobody and built successfully. - -- Alexander Hansen Fink User Liaison -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.10 (Darwin) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iEYEARECAAYFAkuzpiwACgkQB8UpO3rKjQ8L7ACfUishb/GqbCy6f2LsEK7a+7Tw UfUAoKaQvXQu39zamn7aKnRsu4wKj52p =n+Uv -END PGP SIGNATURE- -- Regards, Hariharan B International Institute of Information Technology, Bangalore -- Download Intel#174; Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel -- Download Intel#174; Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] Request for Package review
It builds fine, but when I run the program, I get this: Unable to find a $JAVA_HOME at /usr, continuing with system-provided Java... Exception in thread main java.lang.UnsupportedClassVersionError: Bad version number in .class file at java.lang.ClassLoader.defineClass1(Native Method) at java.lang.ClassLoader.defineClass(ClassLoader.java:676) at java.security.SecureClassLoader.defineClass(SecureClassLoader.java: 124) at java.net.URLClassLoader.defineClass(URLClassLoader.java:260) at java.net.URLClassLoader.access$100(URLClassLoader.java:56) at java.net.URLClassLoader$1.run(URLClassLoader.java:195) at java.security.AccessController.doPrivileged(Native Method) at java.net.URLClassLoader.findClass(URLClassLoader.java:188) at java.lang.ClassLoader.loadClass(ClassLoader.java:317) at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:280) at java.lang.ClassLoader.loadClass(ClassLoader.java:252) at java.lang.ClassLoader.loadClassInternal(ClassLoader.java:375) This is on Package manager version: 0.29.99.cvs Distribution version: selfupdate-cvs Fri Mar 26 22:59:24 2010, 10.5, powerpc with java installed: i system-java 1.6.0-1 [virtual package representing Java 1.6.0] i system-java-dev 1.6.0-1 [virtual package representing Java SDK 1.6.0] i system-java14 1.4.2-1 [virtual package representing Java 1.4.2] i system-java14-dev 1.4.2-1 [virtual package representing Java 1.4.2 development headers] i system-java15 1.5.0-1 [virtual package representing Java 1.5.0] i system-java15-dev 1.5.0-1 [virtual package representing Java 1.5.0 development headers] i system-java16 1.6.0-1 [virtual package representing Java 1.6.0] i system-java16-dev 1.6.0-1 [virtual package representing Java 1.6.0 development headers] i system-java3d 0-1 [virtual package representing Java3D] i system-javaai 0-1 [virtual package representing Java Advanced Imaging] - Koen. On Mar 26, 2010, at 3:33 PM, Hariharan B wrote: Hello Koen, As per your suggestion, I have added the depends field. Please check and notify any changes needed. Thank you On Fri, Mar 26, 2010 at 11:38 PM, Koen van der Drift koenvanderdr...@gmail.com wrote: This is assuming that Java 1.6 is installed as /usr/bin/java Unfortunately you cannot assume that java is installed. So you need to include a dependency on java. There are other packages that depend on java that you can use as an example. - Koen. On Fri, Mar 26, 2010 at 1:47 AM, Hariharan B harihara...@iiitb.net wrote: Hi, The link to the info file is: http://sourceforge.net/tracker/?func=detailaid=2961903group_id=17203atid=414256 Thanks On Fri, Mar 26, 2010 at 10:46 AM, Hariharan B harihara...@iiitb.net wrote: Hi, I submitted my info file of ExTeX after making changes that was suggested by nieder. Can anyone please review it? Thank you -- Regards, Hariharan B International Institute of Information Technology, Bangalore -- Regards, Hariharan B International Institute of Information Technology, Bangalore -- Download Intel#174; Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel -- Regards, Hariharan B International Institute of Information Technology, Bangalore -- Download Intel#174; Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] Request for Package review
This error message will come if your Java version is 1.5. Please find out your version using this command java -version $ java -version Unable to find a $JAVA_HOME at /usr, continuing with system-provided Java... java version 1.5.0_22 Java(TM) 2 Runtime Environment, Standard Edition (build 1.5.0_22- b03-333-9M3125) Java HotSpot(TM) Client VM (build 1.5.0_22-147, mixed mode, sharing) One more thing, your jdk 1.6 need not necessarily be installed in / usr/bin/java. Please do a whereis java and inform me. I'll add it in DescUsage field so that other users will find it useful as well. Plus, thank you for notifying that the info file is building properly. $ whereis java /usr/bin/java PS: Which version of Mac are you using, so that I can try it here. G5 iMac. I also saw that you put a pdf file in the man directory, I don't know if that is allowed. You also use %d%p, this can be replaced by %i. - Koen. -- Download Intel#174; Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] libao - need 10.5 tester
On Mar 27, 2010, at 9:32 AM, Max Horn wrote: Thanks for the test, Koen! I tried to patch around the issue, could you please try the attached revised .info file? That builds fine on my system. Hope this helps, - Koen. -- Download Intel#174; Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] Request for Package review
On Mar 27, 2010, at 12:04 PM, Benjamin Reed wrote: It looks like you have $JAVA_HOME set to /usr for some reason, which is not a valid $JAVA_HOME value. It has to be one of: That's because of the instructions in the extex package: Usage Notes: On terminal type the commands - cp /sw/share/doc/ExTeX/homefile/*.* /Users/username/. cp /sw/share/doc/ExTeX/homefile/.extex /Users/username/. export JAVA_HOME=/usr cd /Users/username extex - This is assuming that Java 1.6 is installed as /usr/bin/java Anyways, depends field added will take care of this Note that bin/java need NOT be present in JAVA_HOME On a new terminal window I get: $ java -version java version 1.5.0_22 Java(TM) 2 Runtime Environment, Standard Edition (build 1.5.0_22- b03-333-9M3125) Java HotSpot(TM) Client VM (build 1.5.0_22-147, mixed mode, sharing) - Koen. -- Download Intel#174; Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] Request for Package review
This is assuming that Java 1.6 is installed as /usr/bin/java Unfortunately you cannot assume that java is installed. So you need to include a dependency on java. There are other packages that depend on java that you can use as an example. - Koen. On Fri, Mar 26, 2010 at 1:47 AM, Hariharan B harihara...@iiitb.net wrote: Hi, The link to the info file is: http://sourceforge.net/tracker/?func=detailaid=2961903group_id=17203atid=414256 Thanks On Fri, Mar 26, 2010 at 10:46 AM, Hariharan B harihara...@iiitb.net wrote: Hi, I submitted my info file of ExTeX after making changes that was suggested by nieder. Can anyone please review it? Thank you -- Regards, Hariharan B International Institute of Information Technology, Bangalore -- Regards, Hariharan B International Institute of Information Technology, Bangalore -- Download Intel#174; Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel -- Download Intel#174; Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] libao - need 10.5 tester
On Mar 26, 2010, at 7:30 PM, Max Horn wrote: So, it would good if somebody with a 10.5 machine could test the attached *experimental* libao4 package (yes, they changed the compat version); if 10.5 support is really broken, a report should be written ASAP. Hi Max, As you predicted, it fails on my PPC system with 10.5: ... /bin/sh ../../../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME= \libao\ -DPACKAGE_TARNAME=\libao\ -DPACKAGE_VERSION=\1.0.0\ - DPACKAGE_STRING=\libao\ 1.0.0\ -DPACKAGE_BUGREPORT=\mo...@xiph.org \ -DPACKAGE=\libao\ -DVERSION=\1.0.0\ -DSTDC_HEADERS=1 - DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 - DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 - DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 - DHAVE_DLFCN_H=1 -DLT_OBJDIR=\.libs/\ -DHAVE_DLFCN_H=1 - DHAVE_DLOPEN=1 -DHAVE_LIBPTHREAD=1 -DDLOPEN_FLAG=\(RTLD_LAZY\) - DSHARED_LIB_EXT=\.so\ -DSIZEOF_SHORT=2 -DSIZEOF_INT=4 - DSIZEOF_LONG=4 -I. -I. -I../../../include/ao -I../../../include - DAO_SYSTEM_CONFIG='/sw/etc/libao.conf' -I/sw/include - D__NO_MATH_INLINES -fsigned-char -g -O2 -DAO_BUILDING_LIBAO -c -o ao_macosx.lo ao_macosx.c libtool: compile: gcc -DPACKAGE_NAME=\libao\ -DPACKAGE_TARNAME= \libao\ -DPACKAGE_VERSION=\1.0.0\ -DPACKAGE_STRING=\libao 1.0.0\ -DPACKAGE_BUGREPORT=\mo...@xiph.org\ -DPACKAGE=\libao\ - DVERSION=\1.0.0\ -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 - DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 - DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 - DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR= \.libs/\ -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -DHAVE_LIBPTHREAD=1 - DDLOPEN_FLAG=(RTLD_LAZY) -DSHARED_LIB_EXT=\.so\ -DSIZEOF_SHORT=2 - DSIZEOF_INT=4 -DSIZEOF_LONG=4 -I. -I. -I../../../include/ao -I../../../ include -DAO_SYSTEM_CONFIG=\/sw/etc/libao.conf\ -I/sw/include - D__NO_MATH_INLINES -fsigned-char -g -O2 -DAO_BUILDING_LIBAO -c ao_macosx.c -fno-common -DPIC -o .libs/ao_macosx.o ao_macosx.c:74: error: syntax error before 'AudioComponentInstance' ... - Koen. -- Download Intel#174; Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] problem while porting
(this time including fink-devel in my reply) Please provide the output from your terminal that shows the errors. Maybe someone recognizes it and can point you in the right direction. - Koen. On Tue, Mar 2, 2010 at 11:23 AM, Pranay Airan pranay.ai...@iiitb.netwrote: thanks but when i searched for cilk before starting porting i cant find it on finkproject website. I want to know that will my package get accepted since 1 version of cilk is already there? though my version of cilk is latest one and this port is back in 2005 the error which i am getting is when my make file is compiling examples in example folder when it compile any program which includes stdlib.h it gives me syntax error in /i386/_structs.h when i manually edited this file and remove garbage values it works fine On Tue, Mar 2, 2010 at 9:44 PM, Koen van der Drift koenvanderdr...@gmail.com wrote: Cilk used to be a fink package back in the 10.3 days: http://fink.cvs.sourceforge.net/viewvc/fink/dists/10.3/unstable/main/finkinfo/languages/cilk.info?revision=1.2view=markup Maybe that can help you with your packaging? What errors are you getting in your compilation? - Koen. On Tue, Mar 2, 2010 at 10:56 AM, Pranay Airan pranay.ai...@iiitb.netwrote: hello We have been trying to package CILK through FINK. In this process, in order to port it on to MAC OSX, we require gcc. So, we installed XCODE 3.1.4 on our machine. Now while running Makefile of CILK, we encountered errors while trying to compiling example .cilk files ... *This is due to some syntax errors in /usr/include/mach/i386/_structs.h which the cilkc compiler is failing to read..* We however modified _struucts.h header file to make our cilk files compile and run on our machine.. We think it as a bug in _structs.h * * *Can we patch the /usr/include/mach/i386/_structs.h file in the process of packaging?* Can u please mail us your /usr/include/mach/i386/_structs.h file so that we can compare it with our file and check whether the same syntax error persists. -- Thanks Pranay Airan Mtech. IIIT-B (91) 9036297912 The hardest work in the world is that which should have been done yesterday. -- Download Intel#174; Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel -- Thanks Pranay Airan Mtech. IIIT-B (91) 9036297912 The hardest work in the world is that which should have been done yesterday. -- Download Intel#174; Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] How to Handle Version Numbers
It gets even more interesting with perl modules. For instance for Module-Build they go from 0.35 - 0.3501 - 0.3502 - 0.36. I'm just skipping the 0.350x ones, it would be a big mess otherwise :-) - Koen. On Fri, Feb 19, 2010 at 9:09 AM, Alexander Hansen alexanderk.han...@gmail.com wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 2/19/10 12:24 AM, David Lowe wrote: On 18 Feb, 2010, at 10:40 AM, Alexander Hansen wrote: Or rather, 2.2.0 2.2.0-rc1 Oh, i guess i was being a bit myopic there. Thanks for pointing out my error. In any case, i wasn't planning on releasing my info file until FreeCiv had a final version. I should just be able to force a rebuild when that happens, right? On a related note, do i increment the revision number when going from 2.2.0-rc1 - 2.2.0?? Or does the rc version not count since it only exists locally??? Sent from my MacBookPro Watch out for that slicing machine, Tom said offhandedly. The revision only matters for a particular version. When you update the version the revision can go back to 1. Or you can update it--it's pretty much arbitrary, as long as it always increases when the package is updated. The one place where the value really matters is when you need to force rebuilds when a user changes OS versions. In that case you'd want the 10.6 revision, say, to be quite a bit larger than the 10.5 revision (like 100 vs 1) so that the 10.5 packaging can be updated many times without overlapping the lowest 10.6 revision. - -- Alexander Hansen Fink User Liaison -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.10 (Darwin) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iEYEARECAAYFAkt+m7IACgkQB8UpO3rKjQ+EngCdEd6vEQ6fFimrihodG54P+uXs M8AAnRmxeIkkCns1aqnzsnV+HUEvVQiI =5sHU -END PGP SIGNATURE- -- Download Intel#174; Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel -- Download Intel#174; Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] problem with emboss upgrade
On Jan 23, 2010, at 10:33 PM, Charles Lepple wrote: Did you try passing in a package name instead of a filename? Yeah, I figured that out later, but am still working on it. Thanks, - Koen. -- Throughout its 18-year history, RSA Conference consistently attracts the world's best and brightest in the field, creating opportunities for Conference attendees to learn about information security's most important issues through interactions with peers, luminaries and emerging and established companies. http://p.sf.net/sfu/rsaconf-dev2dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] problem with emboss upgrade
On Dec 6, 2009, at 12:45 PM, Daniel Macks wrote: It's an upstream bug that probably has no user-visible effect. But if it does, the whole fink support team will spend days trying to sort it out and passing the blame all around. In essence, libeplplot uses libgd but does not use -lgd when being compiled and does not publish this information (need to use libgd when you use libeplplot) in a useable way. That means any other package that ever wants to use libeplplot must somehow magically know to load libgd first, or else suffer a compile-time or run-time error. So I added -lgd. Same for a few other of these missing links. Hi Dan, I'm working on a new emboss and want to make sure that I do it right this time :) I have three questions. I couldn't find the email, but IIRC you mentioned using a script in your experimental that sorts this out for you. I tried that, but got the following output: k...@exile:~$ fink-dyld-link-test /sw/lib/EMBOSS/libeexpat.1.dylib Preparing... g++ -all_load -multiply_defined suppress -bind_at_load /var/folders/0g/ 0gK39pK6GzigM6sJz3JwVTI/-Tmp-/IFC2KeoIjj.c -o /var/folders/0g/ 0gK39pK6GzigM6sJz3JwVTI/-Tmp-/cqv3egYuVc.o Testing package /sw/lib/EMBOSS/libeexpat.1.dylib... Package `/sw/lib/emboss/libeexpat.1.dylib' is not installed. Use dpkg --info (= dpkg-deb --info) to examine archive files, and dpkg --contents (= dpkg-deb --contents) to list their contents. Could not read file list Results: $/sw/lib/EMBOSS/libeexpat.1.dylib = 'Could not read file list'; Summary: /sw/lib/EMBOSS/libeexpat.1.dylib Package not tested Did I use the correct tool? Secondly, (and this was already so in the current emboss), the -dev splitoffs install the libraries in two locations, so two copies of each: lib/libajax* lib/EMBOSS/libajax* Is this correct as well? Finally, can I do anything about these libtool warnings: libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS' Thanks, - Koen. -- Throughout its 18-year history, RSA Conference consistently attracts the world's best and brightest in the field, creating opportunities for Conference attendees to learn about information security's most important issues through interactions with peers, luminaries and emerging and established companies. http://p.sf.net/sfu/rsaconf-dev2dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
[Fink-devel] update yaml-tiny-pm request
Hi, Since I didn't get a reply from the maintainer (by email and IRC), I am posting this here. A newer version of yaml-tiny-pm is required for a recent version of module-build-pm that I maintain: YAML::Tiny (1.36) is installed, but we need version = 1.38 Anyone knows if Ben Reed is around, he may be too busy to update this, it's a small package so I am happy to do that, but wanted to pass it by here first. Thanks, - Koen. -- Throughout its 18-year history, RSA Conference consistently attracts the world's best and brightest in the field, creating opportunities for Conference attendees to learn about information security's most important issues through interactions with peers, luminaries and emerging and established companies. http://p.sf.net/sfu/rsaconf-dev2dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] [Fink-users] problem with emboss upgrade
libajax.la comes from emboss-ajax6-dev. If emboss is building against the currently installed version of itself that's problematic--it should be able to find the libajax.la from its own build process That probably also explains these libtool warnings: libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS' Looking at the info-file, the ConfigParams field contains: --libdir=%p/lib/EMBOSS This was added almost four years ago by dmacks: http://fink.cvs.sourceforge.net/viewvc/fink/dists/10.3/unstable/main/finkinfo/sci/emboss.info?r1=1.19r2=1.20 I do not remember if those libtool warnings were introduced by adding --libdir. I could try removing that tonight and see what happens. If not, is there another way to tell libtool where to look for the .la files (if that is the problem)? Thanks, - Koen. -- Throughout its 18-year history, RSA Conference consistently attracts the world's best and brightest in the field, creating opportunities for Conference attendees to learn about information security's most important issues through interactions with peers, luminaries and emerging and established companies. http://p.sf.net/sfu/rsaconf-dev2dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] [Fink-users] problem with emboss upgrade
There is a new version of emboss out, and I am working on packaging that. I kept the patch in that Dan added a while ago (see his post below), but now get the following error: /bin/sh ../../libtool --tag=CC --mode=link gcc -O2 -I/usr/X11/ include -L/usr/X11/lib -I/usr/X11/include -I/System/Library/ Frameworks/JavaVM.framework/Versions/1.5.0/Home -DHAVE_JAVA -I/System/ Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include - DNO_AUTH -version-info 6:2:0 -L/sw/lib -o libajaxg.la -rpath /sw/ lib/EMBOSS ajgraph.lo ajhist.lo libajax.la ../plplot/libeplplot.la - lm -lgd -lpng -lz -lm libtool: link: cannot find the library `libajax.la' or unhandled argument `libajax.la' make[2]: *** [libajaxg.la] Error 1 make[1]: *** [all-recursive] Error 1 I wonder if thtis has to do with the recently introduced version of dpkg that removes .la files from /sw ? If so, has the patch become moot, and can I remove it? It builds fine without the patch, but that was also the case before the patch was created. I do get tons of these lines, but they have always been there, and it's only a warning: libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS' Finally, I get this during validation: Error: package contains the shared library /sw/lib/EMBOSS/libacd.6.dylib but the corresponding install_name and compatibility_version %p/lib/EMBOSS/libacd.6.dylib 7.0.0 are not listed in the Shlibs field. See the packaging manual. Error: package contains the shared library /sw/lib/EMBOSS/libeexpat.1.dylib but the corresponding install_name and compatibility_version %p/lib/EMBOSS/libeexpat.1.dylib 3.0.0 are not listed in the Shlibs field. See the packaging manual. Error: package contains the shared library /sw/lib/EMBOSS/libensembl.6.dylib but the corresponding install_name and compatibility_version %p/lib/EMBOSS/libensembl.6.dylib 7.0.0 are not listed in the Shlibs field. See the packaging manual. Error: package contains the shared library /sw/lib/EMBOSS/libepcre.7.dylib but the corresponding install_name and compatibility_version %p/lib/EMBOSS/libepcre.7.dylib 8.0.0 are not listed in the Shlibs field. See the packaging manual. Error: package contains the shared library /sw/lib/EMBOSS/libezlib.1.dylib but the corresponding install_name and compatibility_version %p/lib/EMBOSS/libezlib.1.dylib 3.0.0 are not listed in the Shlibs field. See the packaging manual. These are new for this version of emboss. Would these all need their own splitoff field, just like libeplplot? Thanks, - Koen. On Dec 6, 2009, at 12:45 PM, Daniel Macks wrote: On Sun, Dec 06, 2009 at 10:41:15AM -0500, Koen van der Drift wrote: Moving this to fink-devel. I saw that Dan fixed this issue in cvs - thanks! So if I understand correctly, the problem was that I used %N-plplot6- shlibs instead of %N-plplot3-shlibs, is that correct? Right. The essence of the policy is that there must be a 1:1 mapping of Shlibs filename entries and the Package name that contains them. If that filename changes (for example, nucleus.5.dylib - nucleus.6.dylib) then the packagename must change (emboss-nucleus5-shlibs - emboss-nucleus6-shlibs). During the emboss upgrade from version 5.x to 6.x, libeplplot.3.dylib kept its same filename, but the packagename was changed emboss-plplot5-shlibs - emboss-plplot6-shlibs, which means those packages fight over who supplies the file and other packages cannot specify a reliable Depends entry if they need that file. Collision of runtime files among multiple packages is bad. So the package-names of a shared library really have nothing to do with the upstream source version, but only to do with the specific library *file* they contain. For convenience, it's become a best-practice to name the -shlibs package (and its matching -dev) to contain the same versioning as the that library file. So (once I was in make it clean mode, given we already have some breakage mode) I used emboss-plplot3-shlibs as the one new consistent place for libplplot.3.dylib, just like the libnucleus filename number matches for *its* package, etc. This is the change we had discussed and I finally did in the early days of emboss, leading to the DescPort note: dmacks overhauled splitoff layout so that lib versions can float against each other But I am a bit unsure about the changes that were made in the patch file, what are those for? The .patch change is the other DescPort note, a change that got lost in some release since I had implemented it: dmacks added explicit linking to libs that supply symbols used by the shared libraries here. This prevents things that link against the shared libraries from having to know to pass additional flags when the linker
Re: [Fink-devel] [Fink-users] qcad in fink
I got it to build completely by removing this line (added by me earlier) in the info file: export QMAKESPEC=$QTDIR/mkspecs/macx-g++ However, when I start up the app, I only see the splash screen. I'm done for now, but may look at it again later this weekend. - Koen. On Jan 7, 2010, at 10:18 PM, monipol wrote: On 07/01/2010, at 23:04, Koen van der Drift wrote: On Jan 7, 2010, at 3:24 AM, monipol wrote: Hello, Koen. Would it be possible to drop -pedantic? That should fix the 'long long' errors. Alas, I tried: SetCPPFLAGS: -Wno-long-long or SetCFLAGS: -Wno-long-long But get the same error. Maybe the syntax is wrong? That's because qmake does not honour CPPFLAGS/CXXFLAGS. You need to edit mkspecs/defs.pro and either remove -pedantic (which is not really needed anyway, it essentially enables a bunch of warnings) or add -Wno-long-long to QMAKE_CXXFLAGS and QMAKE_CXXFLAGS_DEBUG. For example, add the following Perl pie to PatchScript: perl -pi -e 's/-pedantic/-pedantic -Wno-long-long/' mkspecs/defs.pro You haven't sent the patch file so I'm not sure if my build will finish successfully. At any rate, the build has certainly got past the previous build that had -pedantic only. Cheers, -- monipol http://finkers.wordpress.com -- This SF.Net email is sponsored by the Verizon Developer Community Take advantage of Verizon's best-in-class app development support A streamlined, 14 day to market process makes app distribution fast and easy Join now and get one step closer to millions of Verizon customers http://p.sf.net/sfu/verizon-dev2dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] [Fink-users] qcad in fink
On Thu, Jan 7, 2010 at 3:24 AM, monipol moni...@gmx.com wrote: Hello, Koen. Would it be possible to drop -pedantic? That should fix the 'long long' errors. Hi monipol, Thanks for the suggestion. A quick search in the docs how to do that, did not find any info on using -Wno-pedantic, but I came across the following: -Wlong-long Warn if `long long' type is used. This is enabled by either -pedantic or -Wtraditional in ISO C90 and C++98 modes. To inhibit the warning messages, use -Wno-long-long. I'l try that later today. - Koen. -- This SF.Net email is sponsored by the Verizon Developer Community Take advantage of Verizon's best-in-class app development support A streamlined, 14 day to market process makes app distribution fast and easy Join now and get one step closer to millions of Verizon customers http://p.sf.net/sfu/verizon-dev2dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] [Fink-users] qcad in fink
On Jan 7, 2010, at 3:24 AM, monipol wrote: Hello, Koen. Would it be possible to drop -pedantic? That should fix the 'long long' errors. Alas, I tried: SetCPPFLAGS: -Wno-long-long or SetCFLAGS: -Wno-long-long But get the same error. Maybe the syntax is wrong? - Koen. -- This SF.Net email is sponsored by the Verizon Developer Community Take advantage of Verizon's best-in-class app development support A streamlined, 14 day to market process makes app distribution fast and easy Join now and get one step closer to millions of Verizon customers http://p.sf.net/sfu/verizon-dev2dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] New libgettext8 package
Now duck as fast as you can, Max ;-) - Koen. On Wed, Dec 9, 2009 at 11:40 AM, Max Horn m...@quendi.de wrote: Am 09.12.2009 um 17:17 schrieb Benjamin Reed: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 12/9/09 10:55 AM, Max Horn wrote: OK. So considering we have SetMAKEFLAGS: -j1 in both libgettext info files, it should be relatively safe to remove the BC and wait what happens, right? Seems like it should be, yeah. Excellent. I'll do that now, then, and also will bump the revision, to force lots of people to build it. That way, we should soon find out if there are other hidden issues! Cheers, Max -- Return on Information: Google Enterprise Search pays you back Get the facts. http://p.sf.net/sfu/google-dev2dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel -- Return on Information: Google Enterprise Search pays you back Get the facts. http://p.sf.net/sfu/google-dev2dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] [Fink-users] problem with emboss upgrade
Moving this to fink-devel. I saw that Dan fixed this issue in cvs - thanks! So if I understand correctly, the problem was that I used %N-plplot6- shlibs instead of %N-plplot3-shlibs, is that correct? But I am a bit unsure about the changes that were made in the patch file, what are those for? Thanks, - Koen. On Dec 5, 2009, at 10:15 PM, Alexander Hansen wrote: It shouldn't be that hard. There's one overlapping file to deal with. Something like fink remove emboss-ajax5-shlibs emboss-nucleus5-shlibs emboss-plplot5-shlibs emboss fink install emboss plplot6-shlibs emboss should resolve it. Since the problem is with an overlapping library, I'm not even thinking about doing a quick and dirty fix. This is going to take some thought and care to fix correctly. W. Augustine Dunn III wrote: Fortunately I do not NEED this resolved right away so please no one break their backs trying to fix it. I just would like to be able to have it done in the next few days to a week. Thanks everyone already for your help! Gus On Sat, Dec 5, 2009 at 4:19 PM, Koen van der Drift koenvanderdr...@gmail.com mailto:koenvanderdr...@gmail.com wrote: I'm just seeing this thread. I have no time right now to dig into this, so if any corrections need to be made to the package, feel free to do so. - Koen. On Dec 5, 2009, at 4:47 PM, Martin Costabel wrote: W. Augustine Dunn III wrote: [] E: Unmet dependencies. Try 'apt-get -f install' with no packages (or specify a solution). Did you run 'apt-get -f install' as it says here? This is necessary for apt-get to recover its sanity. -- Martin -- Experience is not what happens to a man; it is what a man does with what happens to him. - Aldous Hux -- Join us December 9, 2009 for the Red Hat Virtual Experience, a free event focused on virtualization and cloud computing. Attend in-depth sessions from your desk. Your couch. Anywhere. http://p.sf.net/sfu/redhat-sfdev2dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] New libgettext8 package
On Nov 30, 2009, at 2:25 PM, Daniel Macks wrote: If some 10.5 and 10.6 folks on various architectures could comment out the Distribution flag in their libgettext8-shlibs.info and get some (hopefully:) positive reports that it 'fink -m build's, can make it more widely available... No problem on 10.5/G5, I now have: i gettext 0.10.40-126 Message localization support i gettext-bin 0.17-17 GNU Internationalization utilities i gettext-tools 0.14.5-4GNU Internationalization utils (shared libs) i libgettext3-dev 0.14.5-3GNU Internationalization utilities (Development Files) i libgettext3-shlibs 0.14.5-3GNU Internationalization utils (shared libs) i libgettext8-shlibs 0.17-17 GNU Internationalization utils (shared libs) i libgettextpo2-shlibs0.14.5-4GNU Internationalization utils (shared libs) I didn't see a Distribution flag in the info file. - Koen. -- Join us December 9, 2009 for the Red Hat Virtual Experience, a free event focused on virtualization and cloud computing. Attend in-depth sessions from your desk. Your couch. Anywhere. http://p.sf.net/sfu/redhat-sfdev2dev ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] ncbitools build failure
I was able to build a newer version and it validates well. There were a lot of warnings about depracated calls, so I don't know if I missed anything. If the current maintainer is still active, I can mail the updated info and patch files to him, otherwise I will put them on the tracker or take over maintainership. - Koen. On Nov 22, 2009, at 5:35 AM, Martin Costabel wrote: Koen van der Drift wrote: Hi Richard, Ncbitools package fails as follows on 10.5.8, unstable. Looking at the cvs log, it semes to me that the maintainer has last touched this sometime in 2003. You are probably the first who has ever tried to build it on 10.5 or newer. If you need it, it would probably be a good idea to upgrade it to a more recent version. They have source tarballs from 2009, as opposed to the one from 2003 that Fink is using. -- Martin -- Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
[Fink-devel] ncbitools build failure
Hi Richard, Ncbitools package fails as follows on 10.5.8, unstable. I have the following motif packages installed: i openmotif3-shlibs 2.2.4-4 Official Implementation of OSF/Motif i openmotif4-shlibs 2.3.2-2 Official Implementation of OSF/Motif - Koen. === cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include - DWIN_MAC -I/Developer/Headers/FlatCarbon drwnflpt.c In file included from drwnflpt.c:4: FullPath.c: In function 'FSpGetFullPath': FullPath.c:167: warning: 'PBGetCatInfoSync' is deprecated (declared at /System/Library/Frameworks/CoreServices.framework/Frameworks/ CarbonCore.framework/Headers/Files.h:8697) FullPath.c:191: warning: 'PBGetCatInfoSync' is deprecated (declared at /System/Library/Frameworks/CoreServices.framework/Frameworks/ CarbonCore.framework/Headers/Files.h:8697) FullPath.c: In function 'FSpLocationFromFullPath': FullPath.c:241: warning: 'NewAliasMinimalFromFullPath' is deprecated (declared at /System/Library/Frameworks/CoreServices.framework/ Frameworks/CarbonCore.framework/Headers/Aliases.h:899) FullPath.c:245: warning: 'ResolveAlias' is deprecated (declared at / System/Library/Frameworks/CoreServices.framework/Frameworks/ CarbonCore.framework/Headers/Aliases.h:925) cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include - DWIN_MAC -I/Developer/Headers/FlatCarbon drwnfspc.c In file included from drwnfspc.c:4: FSpCompat.c: In function 'FSMakeFSSpecCompat': FSpCompat.c:254: warning: 'FSMakeFSSpec' is deprecated (declared at / System/Library/Frameworks/CoreServices.framework/Frameworks/ CarbonCore.framework/Headers/Files.h:10072) FSpCompat.c: In function 'FSpOpenDFCompat': FSpCompat.c:291: warning: 'FSpOpenDF' is deprecated (declared at / System/Library/Frameworks/CoreServices.framework/Frameworks/ CarbonCore.framework/Headers/Files.h:10091) FSpCompat.c: In function 'FSpOpenRFCompat': FSpCompat.c:320: warning: 'FSpOpenRF' is deprecated (declared at / System/Library/Frameworks/CoreServices.framework/Frameworks/ CarbonCore.framework/Headers/Files.h:10110) FSpCompat.c: In function 'FSpCreateCompat': FSpCompat.c:375: warning: 'FSpCreate' is deprecated (declared at / System/Library/Frameworks/CoreServices.framework/Frameworks/ CarbonCore.framework/Headers/Files.h:10130) FSpCompat.c: In function 'FSpDirCreateCompat': FSpCompat.c:421: warning: 'FSpDirCreate' is deprecated (declared at / System/Library/Frameworks/CoreServices.framework/Frameworks/ CarbonCore.framework/Headers/Files.h:10149) FSpCompat.c: In function 'FSpDeleteCompat': FSpCompat.c:443: warning: 'FSpDelete' is deprecated (declared at / System/Library/Frameworks/CoreServices.framework/Frameworks/ CarbonCore.framework/Headers/Files.h:10165) FSpCompat.c: In function 'FSpGetFInfoCompat': FSpCompat.c:470: warning: 'FSpGetFInfo' is deprecated (declared at / System/Library/Frameworks/CoreServices.framework/Frameworks/ CarbonCore.framework/Headers/Files.h:10183) FSpCompat.c: In function 'FSpSetFInfoCompat': FSpCompat.c:502: warning: 'FSpSetFInfo' is deprecated (declared at / System/Library/Frameworks/CoreServices.framework/Frameworks/ CarbonCore.framework/Headers/Files.h:10201) FSpCompat.c: In function 'FSpSetFLockCompat': FSpCompat.c:524: warning: 'FSpSetFLock' is deprecated (declared at / System/Library/Frameworks/CoreServices.framework/Frameworks/ CarbonCore.framework/Headers/Files.h:10217) FSpCompat.c: In function 'FSpRstFLockCompat': FSpCompat.c:546: warning: 'FSpRstFLock' is deprecated (declared at / System/Library/Frameworks/CoreServices.framework/Frameworks/ CarbonCore.framework/Headers/Files.h:10233) FSpCompat.c: In function 'FSpRenameCompat': FSpCompat.c:570: warning: 'FSpRename' is deprecated (declared at / System/Library/Frameworks/CoreServices.framework/Frameworks/ CarbonCore.framework/Headers/Files.h:10251) FSpCompat.c: In function 'FSpCatMoveCompat': FSpCompat.c:598: warning: 'FSpCatMove' is deprecated (declared at / System/Library/Frameworks/CoreServices.framework/Frameworks/ CarbonCore.framework/Headers/Files.h:10269) FSpCompat.c: In function 'FSpExchangeFilesCompat': FSpCompat.c:863: warning: 'FSpExchangeFiles' is deprecated (declared at /System/Library/Frameworks/CoreServices.framework/Frameworks/ CarbonCore.framework/Headers/Files.h:10287) FSpCompat.c: In function 'FSpOpenResFileCompat': FSpCompat.c:886: warning: 'FSpOpenResFile' is deprecated (declared at / System/Library/Frameworks/CoreServices.framework/Frameworks/ CarbonCore.framework/Headers/Resources.h:1233) FSpCompat.c: In function 'FSpCreateResFileCompat': FSpCompat.c:941: warning: 'FSpCreateResFile' is deprecated (declared at /System/Library/Frameworks/CoreServices.framework/Frameworks/ CarbonCore.framework/Headers/Resources.h:1253) cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include - DWIN_MAC -I/Developer/Headers/FlatCarbon drwnmfls.c In file included from MoreFilesX.c:60, from drwnmfls.c:4:
Re: [Fink-devel] bioperl not working on 10.6
I have no access to 10.6, and am unable to test this as the maintainer. Feel free to update the package as suited. Note that many of the dependencies are optional, they add functionality to bioperl, but their absense doesn't break anything, AFAIK. - Koen. On Thu, Nov 12, 2009 at 1:05 PM, David R. Morrison d...@finkproject.org wrote: There are incompatibilities between perl 5.10.0 (which is /usr/bin/ perl in 10.6) and perl 5.8.8. To call bioperl-pm588 in other scripts, you will have to modify their starting lines to #!/sw/bin/perl5.8.8 Better for you, probably, would be to have bioperl-pm updated to a 5.10.0 version (bioperl-pm5100). I don't know if anybody has tried doing that: bioperl-pm has a lot of dependencies so we will need to make sure that all of the dependent packages can be updated as well. -- Dave On Nov 12, 2009, at 9:22 AM, Gavin Sherlock wrote: Hi, Maybe bioperl is not meant to work on 10.6, but I tried a completely fresh fink installation on 10.6 (32-bit fink), and then: fink install bioperl-pm588 however, when I try to use a program that uses a bioperl module, it does: Can't locate Bio/SeqIO.pm in @INC (@INC contains: /sw/lib/perl5/ darwin-thread-multi-2level /sw/lib/perl5 /sw/lib/perl5/darwin / Library/Perl/Updates/5.10.0/darwin-thread-multi-2level /Library/Perl/ Updates/5.10.0 /System/Library/Perl/5.10.0/darwin-thread- multi-2level /System/Library/Perl/5.10.0 /Library/Perl/5.10.0/darwin- thread-multi-2level /Library/Perl/5.10.0 /Network/Library/Perl/ 5.10.0/darwin-thread-multi-2level /Network/Library/Perl/5.10.0 / Network/Library/Perl /System/Library/Perl/Extras/5.10.0/darwin- thread-multi-2level /System/Library/Perl/Extras/5.10.0 .) at gatherMitochondrialReads.pl line 25. The libraries themselves are in: /sw/lib/perl5/5.8.8 but if I add that to the PERL5LIB environmental variable, I now get: dyld: lazy symbol binding failed: Symbol not found: _Perl_Tstack_sp_ptr Referenced from: /sw/lib/perl5/5.8.8/darwin-thread-multi-2level/ auto/IO/IO.bundle Expected in: dynamic lookup dyld: Symbol not found: _Perl_Tstack_sp_ptr Referenced from: /sw/lib/perl5/5.8.8/darwin-thread-multi-2level/ auto/IO/IO.bundle Expected in: dynamic lookup Trace/BPT trap Is there anyway to get bioperl working on 10.6 within fink, or is it not currently supported? Many thanks in advance (and thanks for fink - I use it all the time). Cheers, Gavin Gavin Sherlock Assistant Professor, Research Dept. of Genetics S201A, Grant Building, Stanford University Medical School, Stanford, CA 94305-5120 Tel: 650 498 6012 Fax: 650 724 3701 http://genome-www.stanford.edu/~sherlock -- Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel -- Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel -- Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] FinkCommander 0.5.5 (huh?)
I am getting the following errors when tryin to selfupdate through finkcommander (0.5.5 built in Xcode): I will now run the cvs command to retrieve the latest package descriptions. The 'su' command will be used to run the cvs command as the user 'koen'. After that, the core packages will be updated right away; you should then update the other packages using commands like 'fink update-all'. /usr/bin/su koen -c 'cvs -z3 update -d -P -l' Permission denied, please try again. Permission denied, please try again. Permission denied (publickey,password,keyboard-interactive). cvs [update aborted]: end of file from server (consult above messages if any) ### execution of /usr/bin/su failed, exit code 1 /usr/bin/su koen -c 'cvs -z3 update -d -P 10.4' Permission denied, please try again. Permission denied, please try again. Permission denied (publickey,password,keyboard-interactive). cvs [update aborted]: end of file from server (consult above messages if any) ### execution of /usr/bin/su failed, exit code 1 Failed: Updating using CVS failed. Check the error messages above. Fink update all gives no problems, so I can rule out that my password was entered wrong. Also, Selfupdate works fine in the terminal. If I have some time later today, I will try if I can sterp through the code in Xcode to see what's going on. - Koen. On Nov 4, 2009, at 2:11 AM, monipol wrote: Hello, all. I'm about to release FinkCommander 0.5.5. Nope, you're not dreaming! I've just joined the FinkCommander project and I hope I've done everything right in this release. :) FinkCommander is now a fully universal binary (i386, ppc, x86_64, ppc64) thanks to Madd the Sane, it tells whether a feedback is positive or negative thanks to Brendan Cully, and it has a Japanese translation thanks to Mamoru Komachi. I would like to have some feedback from you before I make a proper release with announcements. I'm particularly interested in getting feedback from all the combinations of Mac OS X versions and architectures. I've read reports that users on Mac OS 10.6 need to set the Perl path in FinkCommander to /usr/bin/perl5.8.9. The update instructions say that if the new FinkCommander application is going to be placed under the same directory as the previous version (e.g. / Applications) then the old application must be removed first. I'm not sure if these instructions still apply, though. Here's the download URL: https://sourceforge.net/projects/finkcommander/files/FinkCommander/0.5.5/FinkCommander_0.5.5.dmg/download Also, if you're a Cocoa developer and you're interested in contributing to FinkCommander, drop me an e-mail. Cheers, -- monipol http://finkers.wordpress.com -- Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel -- Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
[Fink-devel] lipo: can't open input file error
A package I am working on gives the following warning on my iMac G5: ... ld warning: in /sw/lib/qt4-x11/lib/libQtGui.dylib, file is not of required architecture ld warning: in /sw/lib/libpng.dylib, file is not of required architecture ld warning: in /sw/lib/libfreetype.dylib, file is not of required architecture ld warning: in /sw/lib/qt4-x11/lib/libQtCore.dylib, file is not of required architecture ld warning: in /sw/lib/libgthread-2.0.dylib, file is not of required architecture ld warning: in /sw/lib/libglib-2.0.dylib, file is not of required architecture ld: in /sw/lib/libexpat.0.dylib, file is not of required architecture for architecture i386 collect2: ld returned 1 exit status ld warning: option -noall_load is obsolete and being ignored And then it fails as follows: lipo: can't open input file: /var/tmp//ccKAmfsU.out (No such file or directory) Any suggestions how to fix this? Thanks, - Koen. -- Come build with us! The BlackBerry(R) Developer Conference in SF, CA is the only developer event you need to attend this year. Jumpstart your developing skills, take BlackBerry mobile applications to market and stay ahead of the curve. Join us from November 9 - 12, 2009. Register now! http://p.sf.net/sfu/devconference ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] lipo: can't open input file error
Yeah, Iwas thinking along those lines as well. So I found that if I comment out the line: set( CMAKE_OSX_ARCHITECTURES ppc;i386 ) it will not create a universal binary. But then it will create different packages for ppc and i386, correct? How do I work around that, should I make variants, eg? Thanks, - Koen. It looks like your package is trying to build a universal binary and failing to find universal libraries. You'll probably need to patch it not to do that. -- Come build with us! The BlackBerry(R) Developer Conference in SF, CA is the only developer event you need to attend this year. Jumpstart your developing skills, take BlackBerry mobile applications to market and stay ahead of the curve. Join us from November 9 - 12, 2009. Register now! http://p.sf.net/sfu/devconference ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] lipo: can't open input file error
On Tue, Oct 13, 2009 at 8:46 AM, Martin Costabel costa...@wanadoo.fr wrote: Koen van der Drift wrote: Yeah, Iwas thinking along those lines as well. So I found that if I comment out the line: set( CMAKE_OSX_ARCHITECTURES ppc;i386 ) it will not create a universal binary. But then it will create different packages for ppc and i386, correct? How do I work around that, should I make variants, eg? Packages for ppc and i386 are always different, that's why the *.deb files have different names and are stored in different directories. Sounds good, I'll have a shot at it. Are there other packages in fink that do something similar, so I can use that as an example? Thanks, - Koen. -- Come build with us! The BlackBerry(R) Developer Conference in SF, CA is the only developer event you need to attend this year. Jumpstart your developing skills, take BlackBerry mobile applications to market and stay ahead of the curve. Join us from November 9 - 12, 2009. Register now! http://p.sf.net/sfu/devconference ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] lipo: can't open input file error
I don't think you have to play any games with multiple .info files or conditionals in PatchScript. As you said at the top, commenting out the line gives you a single architecture. So, as Martin stated, a deb built on ppc and a deb built on i386 are given different names because they are different and that is normal and shouldn't be a worry. When you say But then it will create different packages for ppc and i386, correct?, by it do you mean fink or do you mean the package source internally creates two separate builds? I'm going to guess the former, which means that the above paragraph should be all that is needed. Yes, indeed I meant the former, sorry for any confusion. I'll work on it when I get home tonight. Thanks for the input. - Koen. -- Come build with us! The BlackBerry(R) Developer Conference in SF, CA is the only developer event you need to attend this year. Jumpstart your developing skills, take BlackBerry mobile applications to market and stay ahead of the curve. Join us from November 9 - 12, 2009. Register now! http://p.sf.net/sfu/devconference ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] emboss and 10.6
I just noticed that emboss is restricted to 10.4 and 10.5 because it depends on system-java14. From the emboss website I know it also works with java 1.5. So is there a way that I can change the info file to include system-java15? Or maybe just system-java, without the version number? What java version is included on 10.6? Thanks, - Koen. On Tue, Sep 29, 2009 at 1:30 PM, Koen van der Drift koenvanderdr...@gmail.com wrote: Hi, I got a report from a user that emboss builds fine on 10.6/64bit. He also added a -O3 optimization without any problems. I have a PPC and am stuck on 10.5, so cannot verify it. Not sure if this is the way to report it, but feel free to add emboss to the list of packages that works with 10.6. Thanks, - Koen. -- Come build with us! The BlackBerryreg; Developer Conference in SF, CA is the only developer event you need to attend this year. Jumpstart your developing skills, take BlackBerry mobile applications to market and stay ahead of the curve. Join us from November 9#45;12, 2009. Register now#33; http://p.sf.net/sfu/devconf ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
[Fink-devel] emboss and 10.6
Hi, I got a report from a user that emboss builds fine on 10.6/64bit. He also added a -O3 optimization without any problems. I have a PPC and am stuck on 10.5, so cannot verify it. Not sure if this is the way to report it, but feel free to add emboss to the list of packages that works with 10.6. Thanks, - Koen. -- Come build with us! The BlackBerryreg; Developer Conference in SF, CA is the only developer event you need to attend this year. Jumpstart your developing skills, take BlackBerry mobile applications to market and stay ahead of the curve. Join us from November 9#45;12, 2009. Register now#33; http://p.sf.net/sfu/devconf ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
[Fink-devel] coot and gtkglext1
Hi, When trying to install coot, I get the following warning: WARNING: The package coot Depends on gtkglext1, but gtkglext1 only allows things to BuildDepend on it. Package manager version: 0.29.9 Distribution version: selfupdate-cvs Fri Sep 25 18:09:20 2009, 10.5, powerpc Thanks, - Koen. -- Come build with us! The BlackBerryreg; Developer Conference in SF, CA is the only developer event you need to attend this year. Jumpstart your developing skills, take BlackBerry mobile applications to market and stay ahead of the curve. Join us from November 9#45;12, 2009. Register now#33; http://p.sf.net/sfu/devconf ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
[Fink-devel] sqlite3-rb18 depends on obsolete package
Hi Benjamin, I did a fink cleanup, and got the following error: Reading buildlock packages... All buildlocks accounted for. The following 1 obsolete package(s) will be removed: swig-shlibs 1.3.20-1014 Tool that connects C, C++ programs with high-level languages /sw/bin/dpkg-lockwait --purge swig-shlibs dpkg: dependency problems prevent removal of swig-shlibs: sqlite3-rb18 depends on swig-shlibs (= 1.3.20-1). /sw/bin/dpkg: error processing swig-shlibs (--purge): dependency problems - not removing Errors were encountered while processing: swig-shlibs ### execution of /sw/bin/dpkg-lockwait failed, exit code 1 Package manager version: 0.29.9 Distribution version: selfupdate-cvs Sun Sep 20 10:58:10 2009, 10.5, powerpc Cheers, - Koen. -- Come build with us! The BlackBerryreg; Developer Conference in SF, CA is the only developer event you need to attend this year. Jumpstart your developing skills, take BlackBerry mobile applications to market and stay ahead of the curve. Join us from November 9#45;12, 2009. Register now#33; http://p.sf.net/sfu/devconf ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] module-build-pm5100-bin conflicts with perl5100
A few days a go I updated module-build-pm with a new upstream version. I'd appreciate it if any of you can have another look at the package and make sure all issues have been resolved. Also, I am using a PPC and will be on 10.5, so I have no idea if there any issues on SL. Feel free to fix those if there are any. Thanks, - Koen. On 7/12/09, Koen van der Drift koenvanderdr...@gmail.com wrote: FYI, I have updated module-build in cvs. Please test to see if the conflict is gone. Thanks, - Koen. On Jul 2, 2009, at 11:48 AM, Jean-François Mertens wrote: On 02 Jul 2009, at 16:58, Koen van der Drift wrote: There are several packages that use module-build so it will be difficult to remove it completely, I think. Meant just for the xyz variants that are also provided by perlxyz itself JF -- Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] module-build-pm5100-bin conflicts with perl5100
FYI, I have updated module-build in cvs. Please test to see if the conflict is gone. Thanks, - Koen. On Jul 2, 2009, at 11:48 AM, Jean-François Mertens wrote: On 02 Jul 2009, at 16:58, Koen van der Drift wrote: There are several packages that use module-build so it will be difficult to remove it completely, I think. Meant just for the xyz variants that are also provided by perlxyz itself JF -- Enter the BlackBerry Developer Challenge This is your chance to win up to $100,000 in prizes! For a limited time, vendors submitting new applications to BlackBerry App World(TM) will have the opportunity to enter the BlackBerry Developer Challenge. See full prize details at: http://p.sf.net/sfu/Challenge ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
Re: [Fink-devel] module-build-pm5100-bin conflicts with perl5100
It looks like the authors of module build are about to release a new upstream version. But before I submit that I'd like to have the package fixed as well :) Is there any agreement, advice, consensus, etc from fink-core on this matter - haven't seen much on the lists, but maybe it was discussed somewhere else. I may jump on irc this weekend if needed to discuss this, thank you sir ;-) - Koen. On 7/2/09, Jean-François Mertens j...@core.ucl.ac.be wrote: On 02 Jul 2009, at 16:58, Koen van der Drift wrote: There are several packages that use module-build so it will be difficult to remove it completely, I think. Meant just for the xyz variants that are also provided by perlxyz itself JF -- ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel
Re: [Fink-devel] module-build-pm5100-bin conflicts with perl5100
There are several packages that use module-build so it will be difficult to remove it completely, I think. - Koen. On 7/2/09, Jean-François Mertens j...@core.ucl.ac.be wrote: On 30 Jun 2009, at 03:21, David R. Morrison wrote: I guess another possibility would be to use the alternatives system for the config_data file. till next 3 or 4 perl versions in fink, and next 3 or 4 versions of this pkg (in so many perl-versions), and nobody knows (as already now...) what supersedes what, and what is compatible with what ? And how will possible dependencies choose the right alternative ? Better maybe to scrap the pkg altogether then, if we know that current (and presumably future) perl pkgs will contain some version of it, and if there is no current dependency, and nobody expresses any specific current need for this pkg... [ Too bad fink doesn't have a 'nice' procedure for scrapping pkgs, i.e., like putting info, patch, and deb files _ if some family member is installed _ into a corresponding subdir of %p/fink/dists/local/attic _ with a msg like : This pkg is henceforth under your own responsibility _ either remove the pkg, and the info, patch, and deb files yourself, or you're your own maintainer for it -- with whatever defects it may have. ] JF -- ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel -- ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel
Re: [Fink-devel] module-build-pm5100-bin conflicts with perl5100
There are now two threads going on about this subject, one in -core and one in -devel. Since I don't belong to -core, I'll follow up here. On 6/29/09, Daniel Macks dma...@netspace.org wrote: We really need to figure out whether config_data is used directly by users (i.e., must be in PATH so can run as command) or is just invoked by module-build-pmXXX itself (in which case it can be renamed or moved to be orthogonal pathname among the different packages that would have it). FWIW, I did a quick scan of all packages in unstable, and none of them (Build)Depend on module-build-pmXXX-bin. Of course that doesn't mean that there would ever be a package that doesn't. What about my earlier suggestion to move config_data out of /sw/bin into /sw/share, eg /sw/share/module-build-pmXXX/scripts/? - Koen. -- ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel
Re: [Fink-devel] module-build-pm5100-bin conflicts with perl5100
I added a fix to cvs - let me know if this is correct and if there are any other issues. Thanks, - Koen. On Jun 21, 2009, at 12:49 PM, Daniel Macks wrote: One issue is that the Conflicts/Replaces of module-build-pmXXX-bin haven't been updated in a while. If the goal is to put some non-perlversioned generic script or data in that package for which user can install any one choice rather than the orthogonal variants module itself, need to C/R all variants. Missing 588 and 5100. But now also fink's perlXXX itself also has that file? I guess perl has a module-build in core now? Maybe the script should be renamed in all cases...something like config_data-X.X.X, which would allow us to nuke the -bin splitoffs similarly to how we've done in other pkgs. If config_data has any pathname or versioning information, it's clearly specific to the XXX, so this forces one to decide which XXX one is really talking about. For compatibility (such as it is), could use update-alternatives to install any once choice as the simple name. A perlXXX-core that has this script could also rename it config_data-X.X.Xcore and join in the update-alternatives pool. dan On Sun, Jun 21, 2009 at 10:14:40AM -0400, Koen van der Drift wrote: (including fink-devel) I did some more digging, and the bin splitoff was created a few years ago by a previous maintainer: http://fink.cvs.sourceforge.net/viewvc/fink/dists/10.3/unstable/main/finkinfo/libs/perlmods/module-build-pm.info?revision=1.13view=log The commit log says: Make a splitoff for the %i/bin/config_data script so that multiple copies of this module may be installed for different Perl versions. Please advice where to put the config_data file, so I can fix the package. Thanks, - Koen. On Jun 20, 2009, at 4:27 PM, Koen van der Drift wrote: Hi Jean-Fran?ois, Thanks for the note. I never added the 5100 variant, and have no means to test it since I run perl 5.8.8. And I never seen this issue with previous versions. Ok, I see it also happens in perl 588 :) Any suggestions where that file could go safely? Thanks, - Koen. On Jun 20, 2009, at 1:34 PM, Jean-Fran?ois Mertens wrote: Hi Koen ! Unpacking module-build-pm5100-bin (from .../module-build-pm5100- bin_0.33-1_darwin-i386.deb) ... /sw/bin/dpkg: error processing /sw/fink/dists/unstable/main/ binary- darwin-i386/libs/perlmods/module-build-pm5100-bin_0.33-1_darwin- i386.deb (--install): trying to overwrite `/sw/bin/config_data', which is also in package perl5100 Best, JF PS: And config_data should be forbidden as a name for something in bin ! Any pkg may want to write such a file. (In ancient times, such files at least had a name pkgname- config !) Cc'ing drm since perl5100 is as well concerned .. -- Are you an open source citizen? Join us for the Open Source Bridge conference! Portland, OR, June 17-19. Two days of sessions, one day of unconference: $250. Need another reason to go? 24-hour hacker lounge. Register today! http://ad.doubleclick.net/clk;215844324;13503038;v?http://opensourcebridge.org ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel -- Daniel Macks dma...@netspace.org http://www.netspace.org/~dmacks -- Are you an open source citizen? Join us for the Open Source Bridge conference! Portland, OR, June 17-19. Two days of sessions, one day of unconference: $250. Need another reason to go? 24-hour hacker lounge. Register today! http://ad.doubleclick.net/clk;215844324;13503038;v?http://opensourcebridge.org ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel -- Are you an open source citizen? Join us for the Open Source Bridge conference! Portland, OR, June 17-19. Two days of sessions, one day of unconference: $250. Need another reason to go? 24-hour hacker lounge. Register today! http://ad.doubleclick.net/clk;215844324;13503038;v?http://opensourcebridge.org ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel
Re: [Fink-devel] module-build-pm5100-bin conflicts with perl5100
Just to clarify, I guess my confusion comes from Dan's earlier answer: If config_data has any pathname or versioning information, it's clearly specific to the XXX, so this forces one to decide which XXX one is really talking about. For compatibility (such as it is), could use update-alternatives to install any once choice as the simple name. A perlXXX-core that has this script could also rename it config_data-X.X.Xcore and join in the update-alternatives pool. I've read this several times, but I really don't understand it :) To be honest, I really don't care where this file ends up, just want to make sure it is done within fink policies. I took over the package because I needed a newer version for another package and the maintainer back then didn't have time to maintain it anymore. Now this issue was discovered because it turns out conflicts with fink's perl5100. I don't use perl5100 and never added that variant, so never caught it before. - Koen. On 6/21/09, Koen van der Drift koenvanderdr...@gmail.com wrote: On Jun 21, 2009, at 3:03 PM, Daniel Macks wrote: Adding C/R fixes a problem, but not the conflicts with perl5100 one that started this thread. Ok, then back to my original question, where should the offending file go to so this issue can be fixed as well? Would /sw/bin/module-build-pmXXX/ work ? Thanks, - Koen. -- Are you an open source citizen? Join us for the Open Source Bridge conference! Portland, OR, June 17-19. Two days of sessions, one day of unconference: $250. Need another reason to go? 24-hour hacker lounge. Register today! http://ad.doubleclick.net/clk;215844324;13503038;v?http://opensourcebridge.org ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel
Re: [Fink-devel] module-build-pm5100-bin conflicts with perl5100
(including fink-devel) I did some more digging, and the bin splitoff was created a few years ago by a previous maintainer: http://fink.cvs.sourceforge.net/viewvc/fink/dists/10.3/unstable/main/finkinfo/libs/perlmods/module-build-pm.info?revision=1.13view=log The commit log says: Make a splitoff for the %i/bin/config_data script so that multiple copies of this module may be installed for different Perl versions. Please advice where to put the config_data file, so I can fix the package. Thanks, - Koen. On Jun 20, 2009, at 4:27 PM, Koen van der Drift wrote: Hi Jean-François, Thanks for the note. I never added the 5100 variant, and have no means to test it since I run perl 5.8.8. And I never seen this issue with previous versions. Ok, I see it also happens in perl 588 :) Any suggestions where that file could go safely? Thanks, - Koen. On Jun 20, 2009, at 1:34 PM, Jean-François Mertens wrote: Hi Koen ! Unpacking module-build-pm5100-bin (from .../module-build-pm5100- bin_0.33-1_darwin-i386.deb) ... /sw/bin/dpkg: error processing /sw/fink/dists/unstable/main/binary- darwin-i386/libs/perlmods/module-build-pm5100-bin_0.33-1_darwin- i386.deb (--install): trying to overwrite `/sw/bin/config_data', which is also in package perl5100 Best, JF PS: And config_data should be forbidden as a name for something in bin ! Any pkg may want to write such a file. (In ancient times, such files at least had a name pkgname- config !) Cc'ing drm since perl5100 is as well concerned .. -- Are you an open source citizen? Join us for the Open Source Bridge conference! Portland, OR, June 17-19. Two days of sessions, one day of unconference: $250. Need another reason to go? 24-hour hacker lounge. Register today! http://ad.doubleclick.net/clk;215844324;13503038;v?http://opensourcebridge.org ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel
Re: [Fink-devel] module-build-pm5100-bin conflicts with perl5100
(including fink-devel) I did some more digging, and the bin splitoff was created a few years ago by a previous maintainer: http://fink.cvs.sourceforge.net/viewvc/fink/dists/10.3/unstable/main/finkinfo/libs/perlmods/module-build-pm.info?revision=1.13view=log The commit log says: Make a splitoff for the %i/bin/config_data script so that multiple copies of this module may be installed for different Perl versions. Please advice where to put the config_data file, so I can fix the package. Thanks, - Koen. On Jun 20, 2009, at 4:27 PM, Koen van der Drift wrote: Hi Jean-François, Thanks for the note. I never added the 5100 variant, and have no means to test it since I run perl 5.8.8. And I never seen this issue with previous versions. Ok, I see it also happens in perl 588 :) Any suggestions where that file could go safely? Thanks, - Koen. On Jun 20, 2009, at 1:34 PM, Jean-François Mertens wrote: Hi Koen ! Unpacking module-build-pm5100-bin (from .../module-build-pm5100- bin_0.33-1_darwin-i386.deb) ... /sw/bin/dpkg: error processing /sw/fink/dists/unstable/main/binary- darwin-i386/libs/perlmods/module-build-pm5100-bin_0.33-1_darwin- i386.deb (--install): trying to overwrite `/sw/bin/config_data', which is also in package perl5100 Best, JF PS: And config_data should be forbidden as a name for something in bin ! Any pkg may want to write such a file. (In ancient times, such files at least had a name pkgname- config !) Cc'ing drm since perl5100 is as well concerned .. -- Are you an open source citizen? Join us for the Open Source Bridge conference! Portland, OR, June 17-19. Two days of sessions, one day of unconference: $250. Need another reason to go? 24-hour hacker lounge. Register today! http://ad.doubleclick.net/clk;215844324;13503038;v?http://opensourcebridge.org ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel
Re: [Fink-devel] module-build-pm5100-bin conflicts with perl5100
On Jun 21, 2009, at 12:49 PM, Daniel Macks wrote: But now also fink's perlXXX itself also has that file? I guess perl has a module-build in core now? I don't have perl 5.10 installed but if that is the case, why not simply remove 5.10 as a variant? - Koen. -- Are you an open source citizen? Join us for the Open Source Bridge conference! Portland, OR, June 17-19. Two days of sessions, one day of unconference: $250. Need another reason to go? 24-hour hacker lounge. Register today! http://ad.doubleclick.net/clk;215844324;13503038;v?http://opensourcebridge.org ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel
Re: [Fink-devel] module-build-pm5100-bin conflicts with perl5100
On Jun 21, 2009, at 1:45 PM, Daniel Macks wrote: module-build, as with many perl modules that are part of perl core, is dual-lifed: it *also* exists in CPAN, and may be updated more often than perl core, and other modules may require that newer version. Having a separate fink package for the module is the only easy way to make that newer version available. I see. So from your previous email, I'm not sure yet what to do to fix this. Is adding the missing C/R enough, or is there more to be done? - Koen. -- Are you an open source citizen? Join us for the Open Source Bridge conference! Portland, OR, June 17-19. Two days of sessions, one day of unconference: $250. Need another reason to go? 24-hour hacker lounge. Register today! http://ad.doubleclick.net/clk;215844324;13503038;v?http://opensourcebridge.org ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel
Re: [Fink-devel] making qt4 variants
Thanks both for your answers. I build both versions, and they just look the same. I guess I was confused by thinking that qt4-mac would make it look like a aqua app. It's still an X11 based app, and will appear in an X11 window. So for now I will just leave the current kemboss.info package. It was a nice exercise, though :) - Koen. -- Are you an open source citizen? Join us for the Open Source Bridge conference! Portland, OR, June 17-19. Two days of sessions, one day of unconference: $250. Need another reason to go? 24-hour hacker lounge. Register today! http://ad.doubleclick.net/clk;215844324;13503038;v?http://opensourcebridge.org ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel
Re: [Fink-devel] making qt4 variants
On Jun 20, 2009, at 2:23 PM, Benjamin Reed wrote: No, building against qt4-mac should give you aqua-native apps (well, technically it's using Carbon). It should not start X11. If it does, something went wrong with your build. Yes it did - I was using the wrong qmake. I fixed that and now everything works. Just need make sure all the stuff in /sw/share goes to seperate directories so folks can have both the mac and x11 version installed. - Koen. -- Are you an open source citizen? Join us for the Open Source Bridge conference! Portland, OR, June 17-19. Two days of sessions, one day of unconference: $250. Need another reason to go? 24-hour hacker lounge. Register today! http://ad.doubleclick.net/clk;215844324;13503038;v?http://opensourcebridge.org ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel
Re: [Fink-devel] making qt4 variants
On Jun 19, 2009, at 3:57 PM, Alexander Hansen wrote: For 3), if there's file overlap, and you want to get rid of the qt3 version, you may want to make a dummy upgrade package for the older kemboss that Depends on the appropriate Variant(s) of kemboss-qt4; e.g. if it only overlaps with kemboss-qt4-x11, then the dummy upgrade package could have Type: bundle Depends: kemboss-qt4-x11, fink-obsolete-packages Looks like it is all working now. I made the old one obsolete and added the qt4 version. Thanks all for the suggestions. - Koen. -- Are you an open source citizen? Join us for the Open Source Bridge conference! Portland, OR, June 17-19. Two days of sessions, one day of unconference: $250. Need another reason to go? 24-hour hacker lounge. Register today! http://ad.doubleclick.net/clk;215844324;13503038;v?http://opensourcebridge.org ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel
[Fink-devel] making qt4 variants
Hi, I recently added a new package (kemboss, a GUI for EMBOSS) to fink. Initially I made a x11 only version, but the developer mentioned that it would be nice if there was also a qt-mac version. So I looked at some other packages to use as an example, and saw that poppler4-qt4 does the same. It's still building all the qt4-mac stuff, so I don't know yet how that's going to work. I do have a few questions: 1. Should the qt4-x11 and qt4-mac version be able to exist next to each other? If yes, I guess I need to make sure that stuff that goes into /sw/share/ goes in two different directories, even though their contetnts is the same? 2. The poppler package starts with an Info3 field. I know about the Info2 field for perl, etc variants, but I am not familiar with Info3 field - is this one designed for qt4 variants? I cannot reach the fink website to look at the packaging manual, the site seems to be down right now 3. After I add the new kemboss-qt4.info package, what do I do with the old one? I added a Replace and Conflicts field in the new package - is that enough and can I leave the old one in the repository? 4. Did I miss anything? Thanks, - Koen. -- Crystal Reports - New Free Runtime and 30 Day Trial Check out the new simplified licensing option that enables unlimited royalty-free distribution of the report engine for externally facing server and web deployment. http://p.sf.net/sfu/businessobjects ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel
Re: [Fink-devel] gmp-4.3.1-1000
On May 16, 2009, at 6:37 PM, Jack Howarth wrote: I haven't tested on powerpc-apple-darwin yet but the initial 4.3.0 release had no issues there. No problems on my iMac G5 with 10.5.7, Package manager version: 0.29.5 Distribution version: selfupdate-cvs Sat May 16 19:25:08 2009, 10.5, powerpc - Koen. -- Crystal Reports - New Free Runtime and 30 Day Trial Check out the new simplified licensing option that enables unlimited royalty-free distribution of the report engine for externally facing server and web deployment. http://p.sf.net/sfu/businessobjects ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel
[Fink-devel] download during install-phase
Hi, A package I maintain has some optional components that are downloaded during the install phase inside the expanded tarball. Is this allowed, or should I pre-download everything and then copy it into the expanded tarball? Thanks, - Koen. -- The NEW KODAK i700 Series Scanners deliver under ANY circumstances! Your production scanning environment may not be a perfect world - but thanks to Kodak, there's a perfect scanner to get the job done! With the NEW KODAK i700 Series Scanner you'll get full speed at 300 dpi even with all image processing features enabled. http://p.sf.net/sfu/kodak-com ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel
Re: [Fink-devel] download during install-phase
On May 10, 2009, at 11:16 AM, David R. Morrison wrote: On May 10, 2009, at 6:46 AM, Koen van der Drift wrote: A package I maintain has some optional components that are downloaded during the install phase inside the expanded tarball. Is this allowed, or should I pre-download everything and then copy it into the expanded tarball? You should pre-download everything. Ok, thanks. Is there a way that can I prevent fink to unpack the additional packages, and just move them into the correct directory in the expanded tarball of the main package? I tried: cp %p/src/probconsRNA.tar.gz T-COFFEE_distribution_Version_%v/ install4tcoffee/download/distributions/ But the validator didn't like the %p/src in there. - Koen. -- The NEW KODAK i700 Series Scanners deliver under ANY circumstances! Your production scanning environment may not be a perfect world - but thanks to Kodak, there's a perfect scanner to get the job done! With the NEW KODAK i700 Series Scanner you'll get full speed at 300 dpi even with all image processing features enabled. http://p.sf.net/sfu/kodak-com ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel
[Fink-devel] fink IRC archives ?
Anyone knows where the IRC archives are stored these days? The link from the website listed here: http://www.finkproject.org/links.php is now dedicated to WoW. thanks, - Koen. -- The NEW KODAK i700 Series Scanners deliver under ANY circumstances! Your production scanning environment may not be a perfect world - but thanks to Kodak, there's a perfect scanner to get the job done! With the NEW KODAK i700 Series Scanner you'll get full speed at 300 dpi even with all image processing features enabled. http://p.sf.net/sfu/kodak-com ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel
Re: [Fink-devel] [Fwd: Perl 5.10.0 Module Build Issue]
On 4/13/09, Alexander Hansen alexanderk.han...@gmail.com wrote: Not remotely my package so I'm forwarding this on. I'm the maintainer of module-build-pm, but I don't see from the output posted how this is related to that package, it looks to be an issue with uri-pm. - Koen. -- This SF.net email is sponsored by: High Quality Requirements in a Collaborative Environment. Download a free trial of Rational Requirements Composer Now! http://p.sf.net/sfu/www-ibm-com ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel
Re: [Fink-devel] gnucash-1.8.12-11
On 4/8/09, Ajay Gautam ajay...@gmail.com wrote: My X11's About says - Xquartz 2.1.5 - (xorg-server 1.3.0-apple22) (2.1.5) Did you install the most recent from http://xquartz.macosforge.org/trac/wiki/X112.3.2.1 ? - Koen. -- This SF.net email is sponsored by: High Quality Requirements in a Collaborative Environment. Download a free trial of Rational Requirements Composer Now! http://p.sf.net/sfu/www-ibm-com ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel
[Fink-devel] Perl error due to 'unimplemented weak references'
Hi, A user of bioperl that I maintain reported the following error: Hi Koen, Hope this finds you well. I wanted to let you know about a bug in bioperl-pm588. Tried a script (i.e., mitobank.pl from David Posada's lab) on Ubuntu 8.04/8.10 with bioperl (1.5.2.102-1ubuntu1/1.5.2.102-3) and works fine. Tried same script in Leopard 10.5.6 with completely updated fink and bioperl-pm588 (1.6.0-1) produces the following error: ~/Desktop$ mitobank.pl 6681 log.txt Use of uninitialized value in concatenation (.) or string at /System/ Library/Perl/5.8.8/darwin-thread-multi-2level/Scalar/Util.pm line 30. Bio::SeqIO: genbank cannot be found Exception - EXCEPTION - MSG: Failed to load module Bio::SeqIO::genbank. Weak references are not implemented in the version of perl at /sw/lib/perl5/5.8.8/Bio/ Species.pm line 91 BEGIN failed--compilation aborted at /sw/lib/perl5/5.8.8/Bio/ Species.pm line 91. Compilation failed in require at /sw/lib/perl5/5.8.8/Bio/SeqIO/ genbank.pm line 172. BEGIN failed--compilation aborted at /sw/lib/perl5/5.8.8/Bio/SeqIO/ genbank.pm line 172. Compilation failed in require at /sw/lib/perl5/5.8.8/Bio/Root/Root.pm line 420. ... I first posted this on the bioperl mailinglist, and one suggestion was that it could be because: ...fink's perl 5.8.8 package, which doesn't appear to have a weak-ref-enabled Scalar::Util in core, causing the error. I ran the same script on my iMac, and had no problems at all. The only difference is that he is using an Intel Mac, and I am using an PPC Mac. Could this error be related to how fink builds perl on an Intel Mac? Thanks, - Koen. -- Open Source Business Conference (OSBC), March 24-25, 2009, San Francisco, CA -OSBC tackles the biggest issue in open source: Open Sourcing the Enterprise -Strategies to boost innovation and cut costs with open source participation -Receive a $600 discount off the registration fee with the source code: SFAD http://p.sf.net/sfu/XcvMzF8H ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel
Re: [Fink-devel] Perl error due to 'unimplemented weak references'
Thanks, that's what I thought too. I'll shoot it back. - Koen. On 2/27/09, Alexander Hansen alexanderk.han...@gmail.com wrote: Koen van der Drift wrote: Hi, A user of bioperl that I maintain reported the following error: Hi Koen, Hope this finds you well. I wanted to let you know about a bug in bioperl-pm588. Tried a script (i.e., mitobank.pl from David Posada's lab) on Ubuntu 8.04/8.10 with bioperl (1.5.2.102-1ubuntu1/1.5.2.102-3) and works fine. Tried same script in Leopard 10.5.6 with completely updated fink and bioperl-pm588 (1.6.0-1) produces the following error: ~/Desktop$ mitobank.pl 6681 log.txt Use of uninitialized value in concatenation (.) or string at /System/ Library/Perl/5.8.8/darwin-thread-multi-2level/Scalar/Util.pm line 30. Bio::SeqIO: genbank cannot be found Exception - EXCEPTION - MSG: Failed to load module Bio::SeqIO::genbank. Weak references are not implemented in the version of perl at /sw/lib/perl5/5.8.8/Bio/ Species.pm line 91 BEGIN failed--compilation aborted at /sw/lib/perl5/5.8.8/Bio/ Species.pm line 91. Compilation failed in require at /sw/lib/perl5/5.8.8/Bio/SeqIO/ genbank.pm line 172. BEGIN failed--compilation aborted at /sw/lib/perl5/5.8.8/Bio/SeqIO/ genbank.pm line 172. Compilation failed in require at /sw/lib/perl5/5.8.8/Bio/Root/Root.pm line 420. ... I first posted this on the bioperl mailinglist, and one suggestion was that it could be because: ...fink's perl 5.8.8 package, which doesn't appear to have a weak-ref-enabled Scalar::Util in core, causing the error. I ran the same script on my iMac, and had no problems at all. The only difference is that he is using an Intel Mac, and I am using an PPC Mac. Could this error be related to how fink builds perl on an Intel Mac? Thanks, - Koen. On Leopard, though, you're not dealing with _Fink's_ Perl-5.8.8, but with Apple's. Let upstream know that they're dealing with an issue in the OS-provided Perl. -- Alexander Hansen Fink User Liaison -- Open Source Business Conference (OSBC), March 24-25, 2009, San Francisco, CA -OSBC tackles the biggest issue in open source: Open Sourcing the Enterprise -Strategies to boost innovation and cut costs with open source participation -Receive a $600 discount off the registration fee with the source code: SFAD http://p.sf.net/sfu/XcvMzF8H ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel
Re: [Fink-devel] Perl error due to 'unimplemented weak references'
Thanks, I have asked him to check that. I also came across this: http://developers.slashdot.org/article.pl?sid=09/02/18/1435227 Not sure if it is the same issue, though. - Koen. On 2/27/09, Martin Costabel costa...@wanadoo.fr wrote: Koen van der Drift wrote: [] ~/Desktop$ mitobank.pl 6681 log.txt Use of uninitialized value in concatenation (.) or string at /System/ Library/Perl/5.8.8/darwin-thread-multi-2level/Scalar/Util.pm line 30. This is strange. I don't have Scalar/Util.pm in that directory. On my system I have /System/Library/Perl/5.8.8/Scalar/Util.pm. Is that a modified perl? CPAN interfering again? -- Martin -- Open Source Business Conference (OSBC), March 24-25, 2009, San Francisco, CA -OSBC tackles the biggest issue in open source: Open Sourcing the Enterprise -Strategies to boost innovation and cut costs with open source participation -Receive a $600 discount off the registration fee with the source code: SFAD http://p.sf.net/sfu/XcvMzF8H ___ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel
