Re: [Freesurfer] Command line tksurfer: use of the color scale "Color Wheel" {Disarmed} {Disarmed}

2019-10-02 Thread Caspar M. Schwiedrzik 
External Email - Use Caution

following up on this: how do we display complex values from a retinotopy
analysis in freeview?
thanks!
caspar


Am Fr., 20. Sept. 2019 um 14:22 Uhr schrieb Caspar M. Schwiedrzik <
cschwie...@rockefeller.edu>:

> Hi Ruopeng and Doug,
> thanks for the hint with the Freeview update. We can now display a linear
> color bar when choosing the color wheel option.
> However, it is not possible to choose "complex", as it was in tksurfer. Is
> Freeview dealing with that internally, or what should we do to display
> results from the retinotopy analyses?
> Thanks,
> Caspar
>
>
> Am Mi., 11. Sept. 2019 um 17:02 Uhr schrieb Ruopeng Wang <
> rpw...@nmr.mgh.harvard.edu>:
>
>> The scalar bar display for overlay in stable 6.0 is broken. If you can
>> install the latest dev build, you should be able to see the scalar bar:
>>
>> https://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview
>> 
>>
>> Best,
>> Ruopeng
>> On 9/11/19 9:57 AM, Caspar M. Schwiedrzik wrote:
>>
>> External Email - Use Caution
>> Hi Doug and Ruopeng,
>> thanks a lot for your advice!
>> Is there a way to display a meaningful legend? In tksurfer/rtview, we get
>> a linear legend that does not seem to make much sense and in freeview we
>> typically do not get anything when we choose color wheel and then click on
>> the legend button.
>> Thanks! Caspar
>>
>>
>> Am Di., 10. Sept. 2019 um 17:23 Uhr schrieb Greve, Douglas N.,Ph.D. <
>> dgr...@mgh.harvard.edu>:
>>
>>> When you run rtview, it will run tksurfer. To get to the color wheel,
>>> open View->Configure->Overlay, then select "Color Wheel" under the
>>> "Color Scale" tab.
>>>
>>> On 9/10/19 4:03 AM, Caspar M. Schwiedrzik wrote:
>>> >
>>> > External Email - Use Caution
>>> >
>>> > Hi Doug and Roupeng,
>>> > did you already have the chance to look into the question how to
>>> > display the color wheel with rtview and/or freeview?
>>> > Thank you! Caspar
>>> >
>>> > Am Sa., 7. Sept. 2019 um 13:13 Uhr schrieb Caspar M. Schwiedrzik
>>> > >> > >:
>>> >
>>> > External Email - Use Caution
>>> >
>>> > Hi Doug and Ruopeng,
>>> > it would be amazing if you could dig out the information on how to
>>> > display the color wheel.
>>> > Looking forward to what you find!
>>> > Caspar
>>> >
>>> >
>>> > Am Fr., 6. Sept. 2019 um 17:14 Uhr schrieb Greve, Douglas N.,Ph.D.
>>> > mailto:dgr...@mgh.harvard.edu>>:
>>> >
>>> > Hi Caspar, sorry for the delay. I have not used the retinotoy
>>> > stream in a long, long time so I don't know off the top of my
>>> > head. I'll have to look into it. tksurfer (from rtview) does
>>> > have a way to display using the color wheel, but I don't
>>> > remember how to do it.
>>> >
>>> > Ruopeng, can freeview display using a color wheel?
>>> >
>>> > On 9/6/2019 6:16 AM, Caspar M. Schwiedrzik wrote:
>>> >>
>>> >> External Email - Use Caution
>>> >>
>>> >> Hi!
>>> >> I wanted to ask again whether there is a way to display the
>>> >> color wheel in rtview and/or freeview. We are debugging our
>>> >> analyses and it would be immensely helpful to have a legend
>>> >> that specifies the color assignments.
>>> >> Thank you,
>>> >> Caspar
>>> >>
>>> >> On Wed, Sep 4, 2019 at 14:30 Caspar M. Schwiedrzik
>>> >> >> >> > wrote:
>>> >>
>>> >> Hi!
>>> >> I am following up on this thread trying to understand how
>>> >> to make the color wheel visible in rtview, or, if
>>> >> necessary, in freeview.
>>> >> Thank you! Caspar
>>> >>
>>> >>
>>> >> ___
>>> >> Freesurfer mailing list
>>> >> Freesurfer@nmr.mgh.harvard.edu  >> Freesurfer@nmr.mgh.harvard.edu>
>>> >> *MailScanner has detected a possible fraud attempt from
>>> >> "urldefense.proofpoint.com" claiming to be*
>>> >>
>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer=DwIGaQ=JeTkUgVztGMmhKYjxsy2rfoWYibK1YmxXez1G3oNStg=sgvCAzCi3iTXkTNRRVMpDnC6tu0lnijYpKXIX_UNme8=qsoRGz8DV7O5aM_Q1p_0TUobogS3cNbPYlck6ExC7tQ=w407m5-Ta0cvCJzLiQ_b97Ht5f7PcqGfBgcDPx0OSWk=
>>>  <
>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer=DwMGaQ=JeTkUgVztGMmhKYjxsy2rfoWYibK1YmxXez1G3oNStg=sgvCAzCi3iTXkTNRRVMpDnC6tu0lnijYpKXIX_UNme8=jp7PANwd2YntpsAh9vlW-QSUZFuXwUjqwQh6xScG7bo=d0O8n20UnPtEmd1qaEgrnyVICtHAqvf-ZlhQiv9zNlI=
>>> >
>>> >
>>>

Re: [Freesurfer] Command line tksurfer: use of the color scale "Color Wheel" {Disarmed} {Disarmed}

2019-09-20 Thread Caspar M. Schwiedrzik 
External Email - Use Caution

Hi Ruopeng and Doug,
thanks for the hint with the Freeview update. We can now display a linear
color bar when choosing the color wheel option.
However, it is not possible to choose "complex", as it was in tksurfer. Is
Freeview dealing with that internally, or what should we do to display
results from the retinotopy analyses?
Thanks,
Caspar


Am Mi., 11. Sept. 2019 um 17:02 Uhr schrieb Ruopeng Wang <
rpw...@nmr.mgh.harvard.edu>:

> The scalar bar display for overlay in stable 6.0 is broken. If you can
> install the latest dev build, you should be able to see the scalar bar:
>
> https://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview
> 
>
> Best,
> Ruopeng
> On 9/11/19 9:57 AM, Caspar M. Schwiedrzik wrote:
>
> External Email - Use Caution
> Hi Doug and Ruopeng,
> thanks a lot for your advice!
> Is there a way to display a meaningful legend? In tksurfer/rtview, we get
> a linear legend that does not seem to make much sense and in freeview we
> typically do not get anything when we choose color wheel and then click on
> the legend button.
> Thanks! Caspar
>
>
> Am Di., 10. Sept. 2019 um 17:23 Uhr schrieb Greve, Douglas N.,Ph.D. <
> dgr...@mgh.harvard.edu>:
>
>> When you run rtview, it will run tksurfer. To get to the color wheel,
>> open View->Configure->Overlay, then select "Color Wheel" under the
>> "Color Scale" tab.
>>
>> On 9/10/19 4:03 AM, Caspar M. Schwiedrzik wrote:
>> >
>> > External Email - Use Caution
>> >
>> > Hi Doug and Roupeng,
>> > did you already have the chance to look into the question how to
>> > display the color wheel with rtview and/or freeview?
>> > Thank you! Caspar
>> >
>> > Am Sa., 7. Sept. 2019 um 13:13 Uhr schrieb Caspar M. Schwiedrzik
>> > > > >:
>> >
>> > External Email - Use Caution
>> >
>> > Hi Doug and Ruopeng,
>> > it would be amazing if you could dig out the information on how to
>> > display the color wheel.
>> > Looking forward to what you find!
>> > Caspar
>> >
>> >
>> > Am Fr., 6. Sept. 2019 um 17:14 Uhr schrieb Greve, Douglas N.,Ph.D.
>> > mailto:dgr...@mgh.harvard.edu>>:
>> >
>> > Hi Caspar, sorry for the delay. I have not used the retinotoy
>> > stream in a long, long time so I don't know off the top of my
>> > head. I'll have to look into it. tksurfer (from rtview) does
>> > have a way to display using the color wheel, but I don't
>> > remember how to do it.
>> >
>> > Ruopeng, can freeview display using a color wheel?
>> >
>> > On 9/6/2019 6:16 AM, Caspar M. Schwiedrzik wrote:
>> >>
>> >> External Email - Use Caution
>> >>
>> >> Hi!
>> >> I wanted to ask again whether there is a way to display the
>> >> color wheel in rtview and/or freeview. We are debugging our
>> >> analyses and it would be immensely helpful to have a legend
>> >> that specifies the color assignments.
>> >> Thank you,
>> >> Caspar
>> >>
>> >> On Wed, Sep 4, 2019 at 14:30 Caspar M. Schwiedrzik
>> >> > >> > wrote:
>> >>
>> >> Hi!
>> >> I am following up on this thread trying to understand how
>> >> to make the color wheel visible in rtview, or, if
>> >> necessary, in freeview.
>> >> Thank you! Caspar
>> >>
>> >>
>> >> ___
>> >> Freesurfer mailing list
>> >> Freesurfer@nmr.mgh.harvard.edu  > Freesurfer@nmr.mgh.harvard.edu>
>> >> *MailScanner has detected a possible fraud attempt from
>> >> "urldefense.proofpoint.com" claiming to be*
>> >>
>> https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer=DwIGaQ=JeTkUgVztGMmhKYjxsy2rfoWYibK1YmxXez1G3oNStg=sgvCAzCi3iTXkTNRRVMpDnC6tu0lnijYpKXIX_UNme8=qsoRGz8DV7O5aM_Q1p_0TUobogS3cNbPYlck6ExC7tQ=w407m5-Ta0cvCJzLiQ_b97Ht5f7PcqGfBgcDPx0OSWk=
>>  <
>> https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer=DwMGaQ=JeTkUgVztGMmhKYjxsy2rfoWYibK1YmxXez1G3oNStg=sgvCAzCi3iTXkTNRRVMpDnC6tu0lnijYpKXIX_UNme8=jp7PANwd2YntpsAh9vlW-QSUZFuXwUjqwQh6xScG7bo=d0O8n20UnPtEmd1qaEgrnyVICtHAqvf-ZlhQiv9zNlI=
>> >
>> >
>> > ___
>> > Freesurfer mailing list
>> > Freesurfer@nmr.mgh.harvard.edu
>> > 
>> >
>>

Re: [Freesurfer] Command line tksurfer: use of the color scale "Color Wheel" {Disarmed}

2019-09-11 Thread Ruopeng Wang 
The scalar bar display for overlay in stable 6.0 is broken. If you can 
install the latest dev build, you should be able to see the scalar bar:


https://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview

Best,
Ruopeng

On 9/11/19 9:57 AM, Caspar M. Schwiedrzik wrote:


External Email - Use Caution

Hi Doug and Ruopeng,
thanks a lot for your advice!
Is there a way to display a meaningful legend? In tksurfer/rtview, we 
get a linear legend that does not seem to make much sense and in 
freeview we typically do not get anything when we choose color wheel 
and then click on the legend button.

Thanks! Caspar


Am Di., 10. Sept. 2019 um 17:23 Uhr schrieb Greve, Douglas N.,Ph.D. 
mailto:dgr...@mgh.harvard.edu>>:


When you run rtview, it will run tksurfer. To get to the color wheel,
open View->Configure->Overlay, then select "Color Wheel" under the
"Color Scale" tab.

On 9/10/19 4:03 AM, Caspar M. Schwiedrzik wrote:
>
> External Email - Use Caution
>
> Hi Doug and Roupeng,
> did you already have the chance to look into the question how to
> display the color wheel with rtview and/or freeview?
> Thank you! Caspar
>
> Am Sa., 7. Sept. 2019 um 13:13 Uhr schrieb Caspar M. Schwiedrzik
> mailto:cschwie...@mail.rockefeller.edu>
> >>:
>
>     External Email - Use Caution
>
>     Hi Doug and Ruopeng,
>     it would be amazing if you could dig out the information on
how to
>     display the color wheel.
>     Looking forward to what you find!
>     Caspar
>
>
>     Am Fr., 6. Sept. 2019 um 17:14 Uhr schrieb Greve, Douglas
N.,Ph.D.
>     mailto:dgr...@mgh.harvard.edu>
>>:
>
>         Hi Caspar, sorry for the delay. I have not used the
retinotoy
>         stream in a long, long time so I don't know off the top
of my
>         head. I'll have to look into it. tksurfer (from rtview) does
>         have a way to display using the color wheel, but I don't
>         remember how to do it.
>
>         Ruopeng, can freeview display using a color wheel?
>
>         On 9/6/2019 6:16 AM, Caspar M. Schwiedrzik wrote:
>>
>>         External Email - Use Caution
>>
>>         Hi!
>>         I wanted to ask again whether there is a way to display the
>>         color wheel in rtview and/or freeview. We are debugging our
>>         analyses and it would be immensely helpful to have a legend
>>         that specifies the color assignments.
>>         Thank you,
>>         Caspar
>>
>>         On Wed, Sep 4, 2019 at 14:30 Caspar M. Schwiedrzik
>>         mailto:cschwie...@rockefeller.edu>
>>         >> wrote:
>>
>>             Hi!
>>             I am following up on this thread trying to
understand how
>>             to make the color wheel visible in rtview, or, if
>>             necessary, in freeview.
>>             Thank you! Caspar
>>
>>
>>  ___
>>         Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu

>
>>         *MailScanner has detected a possible fraud attempt from
>>         "urldefense.proofpoint.com
" claiming to be*
>>

https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer=DwIGaQ=JeTkUgVztGMmhKYjxsy2rfoWYibK1YmxXez1G3oNStg=sgvCAzCi3iTXkTNRRVMpDnC6tu0lnijYpKXIX_UNme8=qsoRGz8DV7O5aM_Q1p_0TUobogS3cNbPYlck6ExC7tQ=w407m5-Ta0cvCJzLiQ_b97Ht5f7PcqGfBgcDPx0OSWk=
 

>
>         ___
>         Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu

>         >
>

https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer=DwICAg=JeTkUgVztGMmhKYjxsy2rfoWYibK1YmxXez1G3oNStg=sgvCAzCi3iTXkTNRRVMpDnC6tu0lnijYpKXIX_UNme8=jp7PANwd2YntpsAh9vlW-QSUZFuXwUjqwQh6xScG7bo=d0O8n20UnPtEmd1qaEgrnyVICtHAqvf-ZlhQiv9zNlI=
>
>
>     ___
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>

Re: [Freesurfer] Command line tksurfer: use of the color scale "Color Wheel" {Disarmed}

2019-09-11 Thread Caspar M. Schwiedrzik 
External Email - Use Caution

Hi Doug and Ruopeng,
thanks a lot for your advice!
Is there a way to display a meaningful legend? In tksurfer/rtview, we get a
linear legend that does not seem to make much sense and in freeview we
typically do not get anything when we choose color wheel and then click on
the legend button.
Thanks! Caspar


Am Di., 10. Sept. 2019 um 17:23 Uhr schrieb Greve, Douglas N.,Ph.D. <
dgr...@mgh.harvard.edu>:

> When you run rtview, it will run tksurfer. To get to the color wheel,
> open View->Configure->Overlay, then select "Color Wheel" under the
> "Color Scale" tab.
>
> On 9/10/19 4:03 AM, Caspar M. Schwiedrzik wrote:
> >
> > External Email - Use Caution
> >
> > Hi Doug and Roupeng,
> > did you already have the chance to look into the question how to
> > display the color wheel with rtview and/or freeview?
> > Thank you! Caspar
> >
> > Am Sa., 7. Sept. 2019 um 13:13 Uhr schrieb Caspar M. Schwiedrzik
> >  > >:
> >
> > External Email - Use Caution
> >
> > Hi Doug and Ruopeng,
> > it would be amazing if you could dig out the information on how to
> > display the color wheel.
> > Looking forward to what you find!
> > Caspar
> >
> >
> > Am Fr., 6. Sept. 2019 um 17:14 Uhr schrieb Greve, Douglas N.,Ph.D.
> > mailto:dgr...@mgh.harvard.edu>>:
> >
> > Hi Caspar, sorry for the delay. I have not used the retinotoy
> > stream in a long, long time so I don't know off the top of my
> > head. I'll have to look into it. tksurfer (from rtview) does
> > have a way to display using the color wheel, but I don't
> > remember how to do it.
> >
> > Ruopeng, can freeview display using a color wheel?
> >
> > On 9/6/2019 6:16 AM, Caspar M. Schwiedrzik wrote:
> >>
> >> External Email - Use Caution
> >>
> >> Hi!
> >> I wanted to ask again whether there is a way to display the
> >> color wheel in rtview and/or freeview. We are debugging our
> >> analyses and it would be immensely helpful to have a legend
> >> that specifies the color assignments.
> >> Thank you,
> >> Caspar
> >>
> >> On Wed, Sep 4, 2019 at 14:30 Caspar M. Schwiedrzik
> >>  >> > wrote:
> >>
> >> Hi!
> >> I am following up on this thread trying to understand how
> >> to make the color wheel visible in rtview, or, if
> >> necessary, in freeview.
> >> Thank you! Caspar
> >>
> >>
> >> ___
> >> Freesurfer mailing list
> >> Freesurfer@nmr.mgh.harvard.edu   Freesurfer@nmr.mgh.harvard.edu>
> >> *MailScanner has detected a possible fraud attempt from
> >> "urldefense.proofpoint.com" claiming to be*
> >>
> https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer=DwIGaQ=JeTkUgVztGMmhKYjxsy2rfoWYibK1YmxXez1G3oNStg=sgvCAzCi3iTXkTNRRVMpDnC6tu0lnijYpKXIX_UNme8=qsoRGz8DV7O5aM_Q1p_0TUobogS3cNbPYlck6ExC7tQ=w407m5-Ta0cvCJzLiQ_b97Ht5f7PcqGfBgcDPx0OSWk=
>  <
> https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer=DwMGaQ=JeTkUgVztGMmhKYjxsy2rfoWYibK1YmxXez1G3oNStg=sgvCAzCi3iTXkTNRRVMpDnC6tu0lnijYpKXIX_UNme8=jp7PANwd2YntpsAh9vlW-QSUZFuXwUjqwQh6xScG7bo=d0O8n20UnPtEmd1qaEgrnyVICtHAqvf-ZlhQiv9zNlI=
> >
> >
> > ___
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> > 
> >
> https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer=DwICAg=JeTkUgVztGMmhKYjxsy2rfoWYibK1YmxXez1G3oNStg=sgvCAzCi3iTXkTNRRVMpDnC6tu0lnijYpKXIX_UNme8=jp7PANwd2YntpsAh9vlW-QSUZFuXwUjqwQh6xScG7bo=d0O8n20UnPtEmd1qaEgrnyVICtHAqvf-ZlhQiv9zNlI=
> >
> >
> > ___
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu  Freesurfer@nmr.mgh.harvard.edu>
> >
> https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer=DwICAg=JeTkUgVztGMmhKYjxsy2rfoWYibK1YmxXez1G3oNStg=sgvCAzCi3iTXkTNRRVMpDnC6tu0lnijYpKXIX_UNme8=9Ft2OXLY0HWVX3wvBXDKsQYsiuuAu9X2jc1I7jZlln0=ITP_eF09tx-NGYsGF9n5JIf3t92bqeurmQrUWzq9ZlQ=
> >
> >
> >
> > ___
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> >
> https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer=DwIGaQ=JeTkUgVztGMmhKYjxsy2rfoWYibK1YmxXez1G3oNStg=sgvCAzCi3iTXkTNRRVMpDnC6tu0lnijYpKXIX_UNme8=qsoRGz8DV7O5aM_Q1p_0TUobogS3cNbPYlck6ExC7tQ=w407m5-Ta0cvCJzLiQ_b97Ht5f7PcqGfBgcDPx0OSWk=
>
>
> ___
> Freesurfer mailing list
>

Re: [Freesurfer] Command line tksurfer: use of the color scale "Color Wheel" {Disarmed}

2019-09-10 Thread Greve, Douglas N.,Ph.D. 
When you run rtview, it will run tksurfer. To get to the color wheel, 
open View->Configure->Overlay, then select "Color Wheel" under the 
"Color Scale" tab.

On 9/10/19 4:03 AM, Caspar M. Schwiedrzik wrote:
>
> External Email - Use Caution
>
> Hi Doug and Roupeng,
> did you already have the chance to look into the question how to 
> display the color wheel with rtview and/or freeview?
> Thank you! Caspar
>
> Am Sa., 7. Sept. 2019 um 13:13 Uhr schrieb Caspar M. Schwiedrzik 
>  >:
>
> External Email - Use Caution
>
> Hi Doug and Ruopeng,
> it would be amazing if you could dig out the information on how to
> display the color wheel.
> Looking forward to what you find!
> Caspar
>
>
> Am Fr., 6. Sept. 2019 um 17:14 Uhr schrieb Greve, Douglas N.,Ph.D.
> mailto:dgr...@mgh.harvard.edu>>:
>
> Hi Caspar, sorry for the delay. I have not used the retinotoy
> stream in a long, long time so I don't know off the top of my
> head. I'll have to look into it. tksurfer (from rtview) does
> have a way to display using the color wheel, but I don't
> remember how to do it.
>
> Ruopeng, can freeview display using a color wheel?
>
> On 9/6/2019 6:16 AM, Caspar M. Schwiedrzik wrote:
>>
>> External Email - Use Caution
>>
>> Hi!
>> I wanted to ask again whether there is a way to display the
>> color wheel in rtview and/or freeview. We are debugging our
>> analyses and it would be immensely helpful to have a legend
>> that specifies the color assignments.
>> Thank you,
>> Caspar
>>
>> On Wed, Sep 4, 2019 at 14:30 Caspar M. Schwiedrzik
>> > > wrote:
>>
>> Hi!
>> I am following up on this thread trying to understand how
>> to make the color wheel visible in rtview, or, if
>> necessary, in freeview.
>> Thank you! Caspar
>>
>>
>> ___
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu  
>> 
>> *MailScanner has detected a possible fraud attempt from
>> "urldefense.proofpoint.com" claiming to be*
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer  
>> 
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> 
> 
> https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer=DwICAg=JeTkUgVztGMmhKYjxsy2rfoWYibK1YmxXez1G3oNStg=sgvCAzCi3iTXkTNRRVMpDnC6tu0lnijYpKXIX_UNme8=jp7PANwd2YntpsAh9vlW-QSUZFuXwUjqwQh6xScG7bo=d0O8n20UnPtEmd1qaEgrnyVICtHAqvf-ZlhQiv9zNlI=
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu 
> 
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Re: [Freesurfer] Command line tksurfer: use of the color scale "Color Wheel" {Disarmed}

2019-09-10 Thread Ruopeng Wang 

Hi Caspar,

In freeview, once you load a overlay onto a surface, you can click on 
"Configure" button under "overlay" settings on the panel to adjust 
overlay display. There is a colorwheel option in it. From command-line, 
it can be activated like this:


freeview -f lh.orig:overlay=lh.thickness:overlay_color=colorwheel

Best,
Ruopeng

On 9/10/19 4:03 AM, Caspar M. Schwiedrzik wrote:


External Email - Use Caution

Hi Doug and Roupeng,
did you already have the chance to look into the question how to 
display the color wheel with rtview and/or freeview?

Thank you! Caspar

Am Sa., 7. Sept. 2019 um 13:13 Uhr schrieb Caspar M. Schwiedrzik 
>:


External Email - Use Caution

Hi Doug and Ruopeng,
it would be amazing if you could dig out the information on how to
display the color wheel.
Looking forward to what you find!
Caspar


Am Fr., 6. Sept. 2019 um 17:14 Uhr schrieb Greve, Douglas N.,Ph.D.
mailto:dgr...@mgh.harvard.edu>>:

Hi Caspar, sorry for the delay. I have not used the retinotoy
stream in a long, long time so I don't know off the top of my
head. I'll have to look into it. tksurfer (from rtview) does
have a way to display using the color wheel, but I don't
remember how to do it.

Ruopeng, can freeview display using a color wheel?

On 9/6/2019 6:16 AM, Caspar M. Schwiedrzik wrote:


External Email - Use Caution

Hi!
I wanted to ask again whether there is a way to display the
color wheel in rtview and/or freeview. We are debugging our
analyses and it would be immensely helpful to have a legend
that specifies the color assignments.
Thank you,
Caspar

On Wed, Sep 4, 2019 at 14:30 Caspar M. Schwiedrzik
mailto:cschwie...@rockefeller.edu>> wrote:

Hi!
I am following up on this thread trying to understand how
to make the color wheel visible in rtview, or, if
necessary, in freeview.
Thank you! Caspar


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Re: [Freesurfer] Command line tksurfer: use of the color scale "Color Wheel" {Disarmed}

2019-09-10 Thread Caspar M. Schwiedrzik 
External Email - Use Caution

Hi Doug and Roupeng,
did you already have the chance to look into the question how to display
the color wheel with rtview and/or freeview?
Thank you! Caspar

Am Sa., 7. Sept. 2019 um 13:13 Uhr schrieb Caspar M. Schwiedrzik <
cschwie...@mail.rockefeller.edu>:

> External Email - Use Caution
>
> Hi Doug and Ruopeng,
> it would be amazing if you could dig out the information on how to display
> the color wheel.
> Looking forward to what you find!
> Caspar
>
>
> Am Fr., 6. Sept. 2019 um 17:14 Uhr schrieb Greve, Douglas N.,Ph.D. <
> dgr...@mgh.harvard.edu>:
>
>> Hi Caspar, sorry for the delay. I have not used the retinotoy stream in a
>> long, long time so I don't know off the top of my head. I'll have to look
>> into it. tksurfer (from rtview) does have a way to display using the color
>> wheel, but I don't remember how to do it.
>>
>> Ruopeng, can freeview display using a color wheel?
>>
>> On 9/6/2019 6:16 AM, Caspar M. Schwiedrzik wrote:
>>
>> External Email - Use Caution
>> Hi!
>> I wanted to ask again whether there is a way to display the color wheel
>> in rtview and/or freeview. We are debugging our analyses and it would be
>> immensely helpful to have a legend that specifies the color assignments.
>> Thank you,
>> Caspar
>>
>> On Wed, Sep 4, 2019 at 14:30 Caspar M. Schwiedrzik <
>> cschwie...@rockefeller.edu> wrote:
>>
>>> Hi!
>>> I am following up on this thread trying to understand how to make the
>>> color wheel visible in rtview, or, if necessary, in freeview.
>>> Thank you! Caspar
>>>
>>>
>> ___
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>> detected a possible fraud attempt from "urldefense.proofpoint.com" claiming 
>> to be* https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer 
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Re: [Freesurfer] Command line tksurfer: use of the color scale "Color Wheel" {Disarmed}

2019-09-07 Thread Caspar M. Schwiedrzik 
External Email - Use Caution

Hi Doug and Ruopeng,
it would be amazing if you could dig out the information on how to display
the color wheel.
Looking forward to what you find!
Caspar


Am Fr., 6. Sept. 2019 um 17:14 Uhr schrieb Greve, Douglas N.,Ph.D. <
dgr...@mgh.harvard.edu>:

> Hi Caspar, sorry for the delay. I have not used the retinotoy stream in a
> long, long time so I don't know off the top of my head. I'll have to look
> into it. tksurfer (from rtview) does have a way to display using the color
> wheel, but I don't remember how to do it.
>
> Ruopeng, can freeview display using a color wheel?
>
> On 9/6/2019 6:16 AM, Caspar M. Schwiedrzik wrote:
>
> External Email - Use Caution
> Hi!
> I wanted to ask again whether there is a way to display the color wheel in
> rtview and/or freeview. We are debugging our analyses and it would be
> immensely helpful to have a legend that specifies the color assignments.
> Thank you,
> Caspar
>
> On Wed, Sep 4, 2019 at 14:30 Caspar M. Schwiedrzik <
> cschwie...@rockefeller.edu> wrote:
>
>> Hi!
>> I am following up on this thread trying to understand how to make the
>> color wheel visible in rtview, or, if necessary, in freeview.
>> Thank you! Caspar
>>
>>
> ___
> Freesurfer mailing 
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Re: [Freesurfer] Command line tksurfer: use of the color scale "Color Wheel"

2019-09-06 Thread Greve, Douglas N.,Ph.D. 
Hi Caspar, sorry for the delay. I have not used the retinotoy stream in a long, 
long time so I don't know off the top of my head. I'll have to look into it. 
tksurfer (from rtview) does have a way to display using the color wheel, but I 
don't remember how to do it.

Ruopeng, can freeview display using a color wheel?

On 9/6/2019 6:16 AM, Caspar M. Schwiedrzik wrote:

External Email - Use Caution

Hi!
I wanted to ask again whether there is a way to display the color wheel in 
rtview and/or freeview. We are debugging our analyses and it would be immensely 
helpful to have a legend that specifies the color assignments.
Thank you,
Caspar

On Wed, Sep 4, 2019 at 14:30 Caspar M. Schwiedrzik 
mailto:cschwie...@rockefeller.edu>> wrote:
Hi!
I am following up on this thread trying to understand how to make the color 
wheel visible in rtview, or, if necessary, in freeview.
Thank you! Caspar




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Re: [Freesurfer] Command line tksurfer: use of the color scale "Color Wheel"

2019-09-06 Thread Caspar M. Schwiedrzik 
External Email - Use Caution

Hi!
I wanted to ask again whether there is a way to display the color wheel in
rtview and/or freeview. We are debugging our analyses and it would be
immensely helpful to have a legend that specifies the color assignments.
Thank you,
Caspar

On Wed, Sep 4, 2019 at 14:30 Caspar M. Schwiedrzik <
cschwie...@rockefeller.edu> wrote:

> Hi!
> I am following up on this thread trying to understand how to make the
> color wheel visible in rtview, or, if necessary, in freeview.
> Thank you! Caspar
>
>
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Re: [Freesurfer] Command line tksurfer: use of the color scale "Color Wheel"

2019-09-04 Thread Caspar M. Schwiedrzik 
External Email - Use Caution

Hi!
I am following up on this thread trying to understand how to make the color
wheel visible in rtview, or, if necessary, in freeview.
Thank you! Caspar
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Re: [Freesurfer] Command line tksurfer: use of the color scale "Color Wheel"

2019-07-18 Thread Matthieu Vanhoutte 
External Email - Use Caution

All my script is based on tksurfer derived commande. Is this possible to
parametrize freeview by command lines with as many options than tksurfer,
and then save snap in one script?

Please give me some information on how to set properly "Color Wheel" Color
scale.

Best,
Matthieu

Le jeu. 18 juil. 2019 à 20:45, Greve, Douglas N.,Ph.D. <
dgr...@mgh.harvard.edu> a écrit :

> In freeview, you can use :overlay_color=colorscale,settings
> maybe Ruopeng can weigh in on exactly what to set them to to get the
> colorwheel
> Are you also looking to have freeview snap pictures for you?
>
> On 7/18/19 11:57 AM, Matthieu VANHOUTTE wrote:
> > External Email - Use Caution
> > Sorry not to be precise on my answer.
> >
> > I can easily open freeview to load overlay on surface and configure
> > the color scale to "Color Wheel".
> >
> > However to create pictures for article I automatize the creation
> > of those pictures by scripting using tksurfer command line. There are
> > different options for this command line but I didn't find any option
> > to set the color scale to which I want "Color Wheel".
> >
> > Is there any tool existing allowing to use "Color Wheel" color scale
> > by scripting ?
> >
> > Best,
> >
> > Matthieu
> >
> > On 18/07/2019 17:51, Greve, Douglas N.,Ph.D. wrote:
> >> I don't know what you mean by "stay graphical". can you explain? What is
> >> the tksurfer option to load the colorwheel?
> >>
> >> On 7/18/19 11:47 AM, Matthieu VANHOUTTE wrote:
> >>> External Email - Use Caution
> >>> Hi Douglas, Bruce,
> >>>
> >>> Freeview is really nice but stay graphical. When I want to create
> >>> composed snapshots of surface overlays I use tksurfer with command
> >>> lines to create these.
> >>>
> >>> I looked at tksurferfv with command lines but didn't see where is the
> >>> option to set color scale to "Color Wheel"?
> >>>
> >>> Best,
> >>>
> >>> Matthieu
> >>>
> >>> On 18/07/2019 17:22, Greve, Douglas N.,Ph.D. wrote:
>  There is a program called tksurferfv that runs freeview but takes all
>  the same command line args as tksurfer
> 
>  On 7/18/19 10:56 AM, Bruce Fischl wrote:
> > Hi Matthieu
> >
> > tksurfer has been deprecated for years. Is there a reason you can't
> > switch to freeview?
> >
> > cheers
> > Bruce
> > On Thu, 18 Jul 2019, Matthieu VANHOUTTE wrote:
> >
> >>   External Email - Use Caution
> >>
> >> Dear experts,
> >>
> >> I use tksurfer in command line to generate multiple faces images of
> >> overlays on the fsaverage surface.
> >>
> >> Graphically it is possible via freeview to set the color scale of
> >> the
> >> overlay with "Color Wheel" setting. I searched into the tksufer
> >> command
> >> help but didn' t find any option to specify this color scale. Doas
> >> anyone know how to deal with it by command lines ?
> >>
> >> Best regards,
> >>
> >> Matthieu
> >>
> >>
> >> ___
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> >>
> >>
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> >>
> >>
> >> The information in this e-mail is intended only for the person to
> >> whom it is
> >> addressed. If you believe this e-mail was sent to you in error and
> >> the e-mail
> >> contains patient information, please contact the Partners Compliance
> >> HelpLine at
> >> http://www.partners.org/complianceline . If the e-mail was sent to
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> >> but does not contain patient information, please contact the sender
> >> and properly
> >> dispose of the e-mail.
>
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Re: [Freesurfer] Command line tksurfer: use of the color scale "Color Wheel"

2019-07-18 Thread Greve, Douglas N.,Ph.D. 
In freeview, you can use :overlay_color=colorscale,settings
maybe Ruopeng can weigh in on exactly what to set them to to get the 
colorwheel
Are you also looking to have freeview snap pictures for you?

On 7/18/19 11:57 AM, Matthieu VANHOUTTE wrote:
> External Email - Use Caution
> Sorry not to be precise on my answer.
>
> I can easily open freeview to load overlay on surface and configure 
> the color scale to "Color Wheel".
>
> However to create pictur    es for article I automatize the creation 
> of those pictures by scripting using tksurfer command line. There are 
> different options for this command line but I didn't find any option 
> to set the color scale to which I want "Color Wheel".
>
> Is there any tool existing allowing to use "Color Wheel" color scale 
> by scripting ?
>
> Best,
>
> Matthieu
>
> On 18/07/2019 17:51, Greve, Douglas N.,Ph.D. wrote:
>> I don't know what you mean by "stay graphical". can you explain? What is
>> the tksurfer option to load the colorwheel?
>>
>> On 7/18/19 11:47 AM, Matthieu VANHOUTTE wrote:
>>> External Email - Use Caution
>>> Hi Douglas, Bruce,
>>>
>>> Freeview is really nice but stay graphical. When I want to create
>>> composed snapshots of surface overlays I use tksurfer with command
>>> lines to create these.
>>>
>>> I looked at tksurferfv with command lines but didn't see where is the
>>> option to set color scale to "Color Wheel"?
>>>
>>> Best,
>>>
>>> Matthieu
>>>
>>> On 18/07/2019 17:22, Greve, Douglas N.,Ph.D. wrote:
 There is a program called tksurferfv that runs freeview but takes all
 the same command line args as tksurfer

 On 7/18/19 10:56 AM, Bruce Fischl wrote:
> Hi Matthieu
>
> tksurfer has been deprecated for years. Is there a reason you can't
> switch to freeview?
>
> cheers
> Bruce
> On Thu, 18 Jul 2019, Matthieu VANHOUTTE wrote:
>
>>   External Email - Use Caution
>>
>> Dear experts,
>>
>> I use tksurfer in command line to generate multiple faces images of
>> overlays on the fsaverage surface.
>>
>> Graphically it is possible via freeview to set the color scale of 
>> the
>> overlay with "Color Wheel" setting. I searched into the tksufer
>> command
>> help but didn' t find any option to specify this color scale. Doas
>> anyone know how to deal with it by command lines ?
>>
>> Best regards,
>>
>> Matthieu
>>
>>
>> ___
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>>
>>
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>>
>> The information in this e-mail is intended only for the person to 
>> whom it is
>> addressed. If you believe this e-mail was sent to you in error and 
>> the e-mail
>> contains patient information, please contact the Partners Compliance 
>> HelpLine at
>> http://www.partners.org/complianceline . If the e-mail was sent to 
>> you in error
>> but does not contain patient information, please contact the sender 
>> and properly
>> dispose of the e-mail.


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Re: [Freesurfer] Command line tksurfer: use of the color scale "Color Wheel"

2019-07-18 Thread Greve, Douglas N.,Ph.D. 
There is a program called tksurferfv that runs freeview but takes all 
the same command line args as tksurfer

On 7/18/19 10:56 AM, Bruce Fischl wrote:
> Hi Matthieu
>
> tksurfer has been deprecated for years. Is there a reason you can't
> switch to freeview?
>
> cheers
> Bruce
> On Thu, 18 Jul 2019, Matthieu VANHOUTTE wrote:
>
>> External Email - Use Caution
>>
>> Dear experts,
>>
>> I use tksurfer in command line to generate multiple faces images of
>> overlays on the fsaverage surface.
>>
>> Graphically it is possible via freeview to set the color scale of the
>> overlay with "Color Wheel" setting. I searched into the tksufer command
>> help but didn' t find any option to specify this color scale. Doas
>> anyone know how to deal with it by command lines ?
>>
>> Best regards,
>>
>> Matthieu
>>
>>
>> ___
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>> Freesurfer@nmr.mgh.harvard.edu
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>>
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Re: [Freesurfer] Command line tksurfer: use of the color scale "Color Wheel"

2019-07-18 Thread Bruce Fischl 
Hi Matthieu

tksurfer has been deprecated for years. Is there a reason you can't 
switch to freeview?

cheers
Bruce
On Thu, 18 Jul 2019, Matthieu VANHOUTTE wrote:

>External Email - Use Caution
>
> Dear experts,
>
> I use tksurfer in command line to generate multiple faces images of
> overlays on the fsaverage surface.
>
> Graphically it is possible via freeview to set the color scale of the
> overlay with "Color Wheel" setting. I searched into the tksufer command
> help but didn' t find any option to specify this color scale. Doas
> anyone know how to deal with it by command lines ?
>
> Best regards,
>
> Matthieu
>
>
> ___
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> Freesurfer@nmr.mgh.harvard.edu
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>
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[Freesurfer] Command line tksurfer: use of the color scale "Color Wheel"

2019-07-18 Thread Matthieu VANHOUTTE 
External Email - Use Caution

Dear experts,

I use tksurfer in command line to generate multiple faces images of 
overlays on the fsaverage surface.

Graphically it is possible via freeview to set the color scale of the 
overlay with "Color Wheel" setting. I searched into the tksufer command 
help but didn' t find any option to specify this color scale. Doas 
anyone know how to deal with it by command lines ?

Best regards,

Matthieu


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