Re: [galaxy-dev] errors installing tool dependencies...

2016-01-25 Thread Martin Čech 
Hi Edgar,

I am not sure about this one. Please try setting 'new_file_path' in your
galaxy.ini to an absolute path, try again and check whether something
changes.

Martin

On Mon, Jan 25, 2016 at 9:23 AM Fernandez Edgar <
edgar.fernan...@umontreal.ca> wrote:

> Hello Martin,
>
>
>
> Thank you!
>
> Your instructions for my problem with Perl package worked.
>
> For the URL of hmmer, it is wrong and I will report it like you suggested
> it.
>
>
>
> Finally, a new error occurred for bowtie.
>
> Would you please take a look?
>
>
>
> My Sincere Salutations,
>
>
>
> *Edgar Fernandez*
>
> System Administrator (Linux)
>
> Direction Générale des Technologies de l'Information et de la Communication
>
> *Université de Montréal*
>
>
>
> PAVILLON ROGER-GAUDRY, bureau X-210
>
> (  Bur. : *1-514-343-6111 poste 16568*
>
>
>
>
>
> *From:* Martin Čech [mailto:mar...@bx.psu.edu]
> *Sent:* January-22-16 2:34 PM
> *To:* Fernandez Edgar <edgar.fernan...@umontreal.ca>;
> galaxy-...@bx.psu.edu
> *Subject:* Re: [galaxy-dev] errors installing tool dependencies...
>
>
>
> Hi Edgar,
>
> for the package_perl issue please try installing updates to the
> dependencies (package_gnu_coreutils and package_perl in their respective
> versions) and then return to this screen and click the 'repository action'
> button and then 'manage dependencies' from the menu. Uninstall both
> dependencies (gnu_coreutil and perl) and then install them again.
>
> That should pick up the newest versions and you should be set.
>
>
>
> Regarding the hmmer that is a more prosaic problem, at the time of the
> installation the software was not available at the given URL. Check the
> machine's internet connection and if it is ok try downloading the file
> manually. If it succeeds the problem might have been on their side and is
> ok now. If it does not the problem can still be on their side and in that
> case either wait a bit and try again or report the issue at
> https://github.com/galaxyproject/tools-iuc/issues
>
>
>
> thank you for using Galaxy.
>
>
>
> Martin
>
> On Fri, Jan 22, 2016 at 2:24 PM Fernandez Edgar <
> edgar.fernan...@umontreal.ca> wrote:
>
> Hello guys,
>
>
>
> Happy new year everyone!
>
> Wish you all the best!
>
>
>
> I have a couple of small problems I’ve attached as pictures…
>
> Can you please help me?
>
>
>
> INFO: My galaxy installation and database is updated today!
>
>
>
> My sincere salutations,
>
>
>
> *Edgar Fernandez*
>
> System Administrator (Linux)
>
> Direction Générale des Technologies de l'Information et de la Communication
>
> *Université de Montréal*
>
>
>
> PAVILLON ROGER-GAUDRY, bureau X-210
>
> (  Bur. : *1-514-343-6111 poste 16568 *
>
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
>
>
___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Re: [galaxy-dev] errors installing tool dependencies...

2016-01-25 Thread Martin Čech 
That was my second guess, I wasn't sure whether it should create that dir
structure. Are you installing this package at this revision? And what
system are you installing it on?

https://toolshed.g2.bx.psu.edu/view/iuc/package_bowtie_2_2_6/0d9cd7487cc9

M.

On Mon, Jan 25, 2016 at 11:17 AM Fernandez Edgar <
edgar.fernan...@umontreal.ca> wrote:

> No wait my mistake: the path doesn’t exists:
>
>
> [Errno 2] No such file or directory: 
> '/home/galaxy/galaxy-prod/database/tmp/tmp-toolshed-mtdb6vbEI/bowtie2-2.2.6/bowtie2-2.2.6/'
>
> Because you have twice "bowtie2-2.2.6" in the full path…
>
> Is that normal?
>
>
>
> *Edgar Fernandez*
>
> System Administrator (Linux)
>
> Direction Générale des Technologies de l'Information et de la Communication
>
> *Université de Montréal*
>
>
>
> PAVILLON ROGER-GAUDRY, bureau X-210
>
> (  Bur. : *1-514-343-6111 poste 16568*
>
>
>
>
>
> *From:* Fernandez Edgar
> *Sent:* January-25-16 11:11 AM
> *To:* 'Martin Čech' <mar...@bx.psu.edu>; galaxy-...@bx.psu.edu
> *Subject:* RE: [galaxy-dev] errors installing tool dependencies...
>
>
>
> Hello Martin.
>
>
>
> I changed the setting “new_file_path” like you said and the same error
> occurs (with the full path obviously).
>
> I check that the full path exists. And is rwx for the galaxy user.
>
> Any other ideas I could try?
>
>
>
> *Edgar Fernandez*
>
> System Administrator (Linux)
>
> Direction Générale des Technologies de l'Information et de la Communication
>
> *Université de Montréal*
>
>
>
> PAVILLON ROGER-GAUDRY, bureau X-210
>
> (  Bur. : *1-514-343-6111 poste 16568*
>
>
>
>
>
> *From:* Martin Čech [mailto:mar...@bx.psu.edu <mar...@bx.psu.edu>]
> *Sent:* January-25-16 9:33 AM
>
>
> *To:* Fernandez Edgar <edgar.fernan...@umontreal.ca>;
> galaxy-...@bx.psu.edu
> *Subject:* Re: [galaxy-dev] errors installing tool dependencies...
>
>
>
> Hi Edgar,
>
>
>
> I am not sure about this one. Please try setting 'new_file_path' in your
> galaxy.ini to an absolute path, try again and check whether something
> changes.
>
>
>
> Martin
>
>
>
> On Mon, Jan 25, 2016 at 9:23 AM Fernandez Edgar <
> edgar.fernan...@umontreal.ca> wrote:
>
> Hello Martin,
>
>
>
> Thank you!
>
> Your instructions for my problem with Perl package worked.
>
> For the URL of hmmer, it is wrong and I will report it like you suggested
> it.
>
>
>
> Finally, a new error occurred for bowtie.
>
> Would you please take a look?
>
>
>
> My Sincere Salutations,
>
>
>
> *Edgar Fernandez*
>
> System Administrator (Linux)
>
> Direction Générale des Technologies de l'Information et de la Communication
>
> *Université de Montréal*
>
>
>
> PAVILLON ROGER-GAUDRY, bureau X-210
>
> (  Bur. : *1-514-343-6111 poste 16568*
>
>
>
>
>
> *From:* Martin Čech [mailto:mar...@bx.psu.edu]
> *Sent:* January-22-16 2:34 PM
> *To:* Fernandez Edgar <edgar.fernan...@umontreal.ca>;
> galaxy-...@bx.psu.edu
> *Subject:* Re: [galaxy-dev] errors installing tool dependencies...
>
>
>
> Hi Edgar,
>
> for the package_perl issue please try installing updates to the
> dependencies (package_gnu_coreutils and package_perl in their respective
> versions) and then return to this screen and click the 'repository action'
> button and then 'manage dependencies' from the menu. Uninstall both
> dependencies (gnu_coreutil and perl) and then install them again.
>
> That should pick up the newest versions and you should be set.
>
>
>
> Regarding the hmmer that is a more prosaic problem, at the time of the
> installation the software was not available at the given URL. Check the
> machine's internet connection and if it is ok try downloading the file
> manually. If it succeeds the problem might have been on their side and is
> ok now. If it does not the problem can still be on their side and in that
> case either wait a bit and try again or report the issue at
> https://github.com/galaxyproject/tools-iuc/issues
>
>
>
> thank you for using Galaxy.
>
>
>
> Martin
>
> On Fri, Jan 22, 2016 at 2:24 PM Fernandez Edgar <
> edgar.fernan...@umontreal.ca> wrote:
>
> Hello guys,
>
>
>
> Happy new year everyone!
>
> Wish you all the best!
>
>
>
> I have a couple of small problems I’ve attached as pictures…
>
> Can you please help me?
>
>
>
> INFO: My galaxy installation and database is updated today!
>
>
>
> My sincere salutations,
>
>
>
> *Edgar Fernandez*
>
> System Administrator (Linux)
>

Re: [galaxy-dev] errors installing tool dependencies...

2016-01-25 Thread Nicola Soranzo 

Hi Edgar,
this smells like an old fixed bug, what version of Galaxy are you running?

Cheers,
Nicola

On 25/01/16 14:22, Fernandez Edgar wrote:


Hello Martin,

Thank you!

Your instructions for my problem with Perl package worked.

For the URL of hmmer, it is wrong and I will report it like you 
suggested it.


Finally, a new error occurred for bowtie.

Would you please take a look?

My Sincere Salutations,

*Edgar Fernandez*

System Administrator (Linux)

Direction Générale des Technologies de l'Information et de la 
Communication*//*


*/Université de Montréal/*

*//*

PAVILLON ROGER-GAUDRY, bureau X-210

(  Bur. : *1-514-343-6111 poste 16568//*

*From:*Martin Čech [mailto:mar...@bx.psu.edu]
*Sent:* January-22-16 2:34 PM
*To:* Fernandez Edgar <edgar.fernan...@umontreal.ca>; 
galaxy-...@bx.psu.edu

*Subject:* Re: [galaxy-dev] errors installing tool dependencies...

Hi Edgar,
*
*for the package_perl issue please try installing updates to the 
dependencies (package_gnu_coreutils and package_perl in their 
respective versions) and then return to this screen and click the 
'repository action' button and then 'manage dependencies' from the 
menu. Uninstall both dependencies (gnu_coreutil and perl) and then 
install them again.


That should pick up the newest versions and you should be set.

Regarding the hmmer that is a more prosaic problem, at the time of the 
installation the software was not available at the given URL. Check 
the machine's internet connection and if it is ok try downloading the 
file manually. If it succeeds the problem might have been on their 
side and is ok now. If it does not the problem can still be on their 
side and in that case either wait a bit and try again or report the 
issue athttps://github.com/galaxyproject/tools-iuc/issues


thank you for using Galaxy.

Martin

On Fri, Jan 22, 2016 at 2:24 PM Fernandez Edgar 
<edgar.fernan...@umontreal.ca <mailto:edgar.fernan...@umontreal.ca>> 
wrote:


Hello guys,

Happy new year everyone!

Wish you all the best!

I have a couple of small problems I’ve attached as pictures…

Can you please help me?

INFO: My galaxy installation and database is updated today!

My sincere salutations,

*Edgar Fernandez*

System Administrator (Linux)

Direction Générale des Technologies de l'Information et de la
Communication

*/Université de Montréal/*

*//*

PAVILLON ROGER-GAUDRY, bureau X-210

(  Bur. : *1-514-343-6111 poste 16568 *

___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/



___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
   https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
   http://galaxyproject.org/search/mailinglists/


___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Re: [galaxy-dev] errors installing tool dependencies...

2016-01-25 Thread Fernandez Edgar 
Hello Martin.

I changed the setting “new_file_path” like you said and the same error occurs 
(with the full path obviously).
I check that the full path exists. And is rwx for the galaxy user.
Any other ideas I could try?

Edgar Fernandez
System Administrator (Linux)
Direction Générale des Technologies de l'Information et de la Communication
Université de Montréal

PAVILLON ROGER-GAUDRY, bureau X-210
•  Bur. : 1-514-343-6111 poste 16568


From: Martin Čech [mailto:mar...@bx.psu.edu]
Sent: January-25-16 9:33 AM
To: Fernandez Edgar <edgar.fernan...@umontreal.ca>; galaxy-...@bx.psu.edu
Subject: Re: [galaxy-dev] errors installing tool dependencies...

Hi Edgar,

I am not sure about this one. Please try setting 'new_file_path' in your 
galaxy.ini to an absolute path, try again and check whether something changes.

Martin

On Mon, Jan 25, 2016 at 9:23 AM Fernandez Edgar 
<edgar.fernan...@umontreal.ca<mailto:edgar.fernan...@umontreal.ca>> wrote:
Hello Martin,

Thank you!
Your instructions for my problem with Perl package worked.
For the URL of hmmer, it is wrong and I will report it like you suggested it.

Finally, a new error occurred for bowtie.
Would you please take a look?

My Sincere Salutations,

Edgar Fernandez
System Administrator (Linux)
Direction Générale des Technologies de l'Information et de la Communication
Université de Montréal

PAVILLON ROGER-GAUDRY, bureau X-210
•  Bur. : 1-514-343-6111 poste 16568


From: Martin Čech [mailto:mar...@bx.psu.edu<mailto:mar...@bx.psu.edu>]
Sent: January-22-16 2:34 PM
To: Fernandez Edgar 
<edgar.fernan...@umontreal.ca<mailto:edgar.fernan...@umontreal.ca>>; 
galaxy-...@bx.psu.edu<mailto:galaxy-...@bx.psu.edu>
Subject: Re: [galaxy-dev] errors installing tool dependencies...

Hi Edgar,

for the package_perl issue please try installing updates to the dependencies 
(package_gnu_coreutils and package_perl in their respective versions) and then 
return to this screen and click the 'repository action' button and then 'manage 
dependencies' from the menu. Uninstall both dependencies (gnu_coreutil and 
perl) and then install them again.
That should pick up the newest versions and you should be set.

Regarding the hmmer that is a more prosaic problem, at the time of the 
installation the software was not available at the given URL. Check the 
machine's internet connection and if it is ok try downloading the file 
manually. If it succeeds the problem might have been on their side and is ok 
now. If it does not the problem can still be on their side and in that case 
either wait a bit and try again or report the issue at 
https://github.com/galaxyproject/tools-iuc/issues

thank you for using Galaxy.

Martin
On Fri, Jan 22, 2016 at 2:24 PM Fernandez Edgar 
<edgar.fernan...@umontreal.ca<mailto:edgar.fernan...@umontreal.ca>> wrote:
Hello guys,

Happy new year everyone!
Wish you all the best!

I have a couple of small problems I’ve attached as pictures…
Can you please help me?

INFO: My galaxy installation and database is updated today!

My sincere salutations,

Edgar Fernandez
System Administrator (Linux)
Direction Générale des Technologies de l'Information et de la Communication
Université de Montréal

PAVILLON ROGER-GAUDRY, bureau X-210
•  Bur. : 1-514-343-6111 poste 16568
___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Re: [galaxy-dev] errors installing tool dependencies...

2016-01-25 Thread Nicola Soranzo 

Hi Edgar,
indeed your bug was fixed long ago, please see 
http://dev.list.galaxyproject.org/Bismark-installation-dependencies-error-td4668186.html 



You should really move to the GitHub repository and update to the latest 
15.07 or (better) to 15.10 .


Cheers,
Nicola

On 25/01/16 17:09, Fernandez Edgar wrote:


[galaxy@galaxy_sever galaxy-prod]$ hg id -i

f6683935f81a+

*Edgar Fernandez*

System Administrator (Linux)

Direction Générale des Technologies de l'Information et de la 
Communication*//*


*/Université de Montréal/*

*//*

PAVILLON ROGER-GAUDRY, bureau X-210

(  Bur. : *1-514-343-6111 poste 16568//*

*From:*Nicola Soranzo [mailto:nicola.sora...@gmail.com] *On Behalf Of 
*Nicola Soranzo

*Sent:* January-25-16 12:05 PM
*To:* Fernandez Edgar <edgar.fernan...@umontreal.ca>; Martin Čech 
<mar...@bx.psu.edu>; galaxy-...@bx.psu.edu

*Subject:* Re: [galaxy-dev] errors installing tool dependencies...

Hi Edgar,
this smells like an old fixed bug, what version of Galaxy are you running?

Cheers,
Nicola

On 25/01/16 14:22, Fernandez Edgar wrote:

Hello Martin,

Thank you!

Your instructions for my problem with Perl package worked.

For the URL of hmmer, it is wrong and I will report it like you
suggested it.

Finally, a new error occurred for bowtie.

Would you please take a look?

My Sincere Salutations,

*Edgar Fernandez*

System Administrator (Linux)

Direction Générale des Technologies de l'Information et de la
Communication

*/Université de Montréal/*

*//*

PAVILLON ROGER-GAUDRY, bureau X-210

(  Bur. : *1-514-343-6111 poste 16568*

*From:*Martin Čech [mailto:mar...@bx.psu.edu]
*Sent:* January-22-16 2:34 PM
*To:* Fernandez Edgar <edgar.fernan...@umontreal.ca>
<mailto:edgar.fernan...@umontreal.ca>; galaxy-...@bx.psu.edu
<mailto:galaxy-...@bx.psu.edu>
    *Subject:* Re: [galaxy-dev] errors installing tool dependencies...

Hi Edgar,
*
*for the package_perl issue please try installing updates to the
dependencies (package_gnu_coreutils and package_perl in their
respective versions) and then return to this screen and click the
'repository action' button and then 'manage dependencies' from the
menu. Uninstall both dependencies (gnu_coreutil and perl) and then
install them again.

That should pick up the newest versions and you should be set.

Regarding the hmmer that is a more prosaic problem, at the time of
the installation the software was not available at the given URL.
Check the machine's internet connection and if it is ok try
downloading the file manually. If it succeeds the problem might
have been on their side and is ok now. If it does not the problem
can still be on their side and in that case either wait a bit and
try again or report the issue
athttps://github.com/galaxyproject/tools-iuc/issues

thank you for using Galaxy.

Martin

On Fri, Jan 22, 2016 at 2:24 PM Fernandez Edgar
<edgar.fernan...@umontreal.ca
<mailto:edgar.fernan...@umontreal.ca>> wrote:

Hello guys,

Happy new year everyone!

Wish you all the best!

I have a couple of small problems I’ve attached as pictures…

Can you please help me?

INFO: My galaxy installation and database is updated today!

My sincere salutations,

*Edgar Fernandez*

System Administrator (Linux)

Direction Générale des Technologies de l'Information et de la
Communication

*/Université de Montréal/*

*//*

PAVILLON ROGER-GAUDRY, bureau X-210

(  Bur. : *1-514-343-6111 poste 16568 *

___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/




___

Please keep all replies on the list by using "reply all"

in your mail client.  To manage your subscriptions to this

and other Galaxy lists, please use the interface at:

   https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:

   http://galaxyproject.org/search/mailinglists/



___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Re: [galaxy-dev] errors installing tool dependencies...

2016-01-25 Thread Martin Čech 
Edgar,

check 'How to migrate a Galaxy instance from Mercurial Bitbucket to Git
GitHub' at https://wiki.galaxyproject.org/Develop/SourceCode

Thanks

M.
On Mon, Jan 25, 2016 at 12:29 PM Fernandez Edgar <
edgar.fernan...@umontreal.ca> wrote:

> How would I safely make the transition from mercurial to github without my
> installation?
>
>
>
> *Edgar Fernandez*
>
> System Administrator (Linux)
>
> Direction Générale des Technologies de l'Information et de la Communication
>
> *Université de Montréal*
>
>
>
> PAVILLON ROGER-GAUDRY, bureau X-210
>
> (  Bur. : *1-514-343-6111 poste 16568*
>
>
>
>
>
> *From:* Nicola Soranzo [mailto:nicola.sora...@gmail.com] *On Behalf Of *Nicola
> Soranzo
> *Sent:* January-25-16 12:22 PM
> *To:* Fernandez Edgar <edgar.fernan...@umontreal.ca>;
> galaxy-dev@lists.galaxyproject.org
>
>
> *Subject:* Re: [galaxy-dev] errors installing tool dependencies...
>
>
>
> Hi Edgar,
> indeed your bug was fixed long ago, please see
> http://dev.list.galaxyproject.org/Bismark-installation-dependencies-error-td4668186.html
>
> You should really move to the GitHub repository and update to the latest
> 15.07 or (better) to 15.10 .
>
> Cheers,
> Nicola
>
> On 25/01/16 17:09, Fernandez Edgar wrote:
>
> [galaxy@galaxy_sever galaxy-prod]$ hg id -i
>
> f6683935f81a+
>
>
>
> *Edgar Fernandez*
>
> System Administrator (Linux)
>
> Direction Générale des Technologies de l'Information et de la Communication
>
> *Université de Montréal*
>
>
>
> PAVILLON ROGER-GAUDRY, bureau X-210
>
> (  Bur. : *1-514-343-6111 poste 16568*
>
>
>
>
>
> *From:* Nicola Soranzo [mailto:nicola.sora...@gmail.com
> <nicola.sora...@gmail.com>] *On Behalf Of *Nicola Soranzo
> *Sent:* January-25-16 12:05 PM
> *To:* Fernandez Edgar <edgar.fernan...@umontreal.ca>
> <edgar.fernan...@umontreal.ca>; Martin Čech <mar...@bx.psu.edu>
> <mar...@bx.psu.edu>; galaxy-...@bx.psu.edu
> *Subject:* Re: [galaxy-dev] errors installing tool dependencies...
>
>
>
> Hi Edgar,
> this smells like an old fixed bug, what version of Galaxy are you running?
>
> Cheers,
> Nicola
>
> On 25/01/16 14:22, Fernandez Edgar wrote:
>
> Hello Martin,
>
>
>
> Thank you!
>
> Your instructions for my problem with Perl package worked.
>
> For the URL of hmmer, it is wrong and I will report it like you suggested
> it.
>
>
>
> Finally, a new error occurred for bowtie.
>
> Would you please take a look?
>
>
>
> My Sincere Salutations,
>
>
>
> *Edgar Fernandez*
>
> System Administrator (Linux)
>
> Direction Générale des Technologies de l'Information et de la Communication
>
> *Université de Montréal*
>
>
>
> PAVILLON ROGER-GAUDRY, bureau X-210
>
> (  Bur. : *1-514-343-6111 poste 16568*
>
>
>
>
>
> *From:* Martin Čech [mailto:mar...@bx.psu.edu <mar...@bx.psu.edu>]
> *Sent:* January-22-16 2:34 PM
> *To:* Fernandez Edgar <edgar.fernan...@umontreal.ca>
> <edgar.fernan...@umontreal.ca>; galaxy-...@bx.psu.edu
> *Subject:* Re: [galaxy-dev] errors installing tool dependencies...
>
>
>
> Hi Edgar,
>
> for the package_perl issue please try installing updates to the
> dependencies (package_gnu_coreutils and package_perl in their respective
> versions) and then return to this screen and click the 'repository action'
> button and then 'manage dependencies' from the menu. Uninstall both
> dependencies (gnu_coreutil and perl) and then install them again.
>
> That should pick up the newest versions and you should be set.
>
>
>
> Regarding the hmmer that is a more prosaic problem, at the time of the
> installation the software was not available at the given URL. Check the
> machine's internet connection and if it is ok try downloading the file
> manually. If it succeeds the problem might have been on their side and is
> ok now. If it does not the problem can still be on their side and in that
> case either wait a bit and try again or report the issue at
> https://github.com/galaxyproject/tools-iuc/issues
>
>
>
> thank you for using Galaxy.
>
>
>
> Martin
>
> On Fri, Jan 22, 2016 at 2:24 PM Fernandez Edgar <
> edgar.fernan...@umontreal.ca> wrote:
>
> Hello guys,
>
>
>
> Happy new year everyone!
>
> Wish you all the best!
>
>
>
> I have a couple of small problems I’ve attached as pictures…
>
> Can you please help me?
>
>
>
> INFO: My galaxy installation and database is updated today!
>
>
>
> My sincere salutations,
>
>
>
&g