Hi Edgar,
indeed your bug was fixed long ago, please see
http://dev.list.galaxyproject.org/Bismark-installation-dependencies-error-td4668186.html
You should really move to the GitHub repository and update to the latest
15.07 or (better) to 15.10 .
Cheers,
Nicola
On 25/01/16 17:09, Fernandez Edgar wrote:
[galaxy@galaxy_sever galaxy-prod]$ hg id -i
f6683935f81a+
*Edgar Fernandez*
System Administrator (Linux)
Direction Générale des Technologies de l'Information et de la
Communication*//*
*/Université de Montréal/*
*//*
PAVILLON ROGER-GAUDRY, bureau X-210
( Bur. : *1-514-343-6111 poste 16568//*
*From:*Nicola Soranzo [mailto:[email protected]] *On Behalf Of
*Nicola Soranzo
*Sent:* January-25-16 12:05 PM
*To:* Fernandez Edgar <[email protected]>; Martin Čech
<[email protected]>; [email protected]
*Subject:* Re: [galaxy-dev] errors installing tool dependencies...
Hi Edgar,
this smells like an old fixed bug, what version of Galaxy are you running?
Cheers,
Nicola
On 25/01/16 14:22, Fernandez Edgar wrote:
Hello Martin,
Thank you!
Your instructions for my problem with Perl package worked.
For the URL of hmmer, it is wrong and I will report it like you
suggested it.
Finally, a new error occurred for bowtie.
Would you please take a look?
My Sincere Salutations,
*Edgar Fernandez*
System Administrator (Linux)
Direction Générale des Technologies de l'Information et de la
Communication
*/Université de Montréal/*
*//*
PAVILLON ROGER-GAUDRY, bureau X-210
( Bur. : *1-514-343-6111 poste 16568*
*From:*Martin Čech [mailto:[email protected]]
*Sent:* January-22-16 2:34 PM
*To:* Fernandez Edgar <[email protected]>
<mailto:[email protected]>; [email protected]
<mailto:[email protected]>
*Subject:* Re: [galaxy-dev] errors installing tool dependencies...
Hi Edgar,
*
*for the package_perl issue please try installing updates to the
dependencies (package_gnu_coreutils and package_perl in their
respective versions) and then return to this screen and click the
'repository action' button and then 'manage dependencies' from the
menu. Uninstall both dependencies (gnu_coreutil and perl) and then
install them again.
That should pick up the newest versions and you should be set.
Regarding the hmmer that is a more prosaic problem, at the time of
the installation the software was not available at the given URL.
Check the machine's internet connection and if it is ok try
downloading the file manually. If it succeeds the problem might
have been on their side and is ok now. If it does not the problem
can still be on their side and in that case either wait a bit and
try again or report the issue
athttps://github.com/galaxyproject/tools-iuc/issues
thank you for using Galaxy.
Martin
On Fri, Jan 22, 2016 at 2:24 PM Fernandez Edgar
<[email protected]
<mailto:[email protected]>> wrote:
Hello guys,
Happy new year everyone!
Wish you all the best!
I have a couple of small problems I’ve attached as pictures…
Can you please help me?
INFO: My galaxy installation and database is updated today!
My sincere salutations,
*Edgar Fernandez*
System Administrator (Linux)
Direction Générale des Technologies de l'Information et de la
Communication
*/Université de Montréal/*
*//*
PAVILLON ROGER-GAUDRY, bureau X-210
( Bur. : *1-514-343-6111 poste 16568 *
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___________________________________________________________
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