Hi Edgar, I am not sure about this one. Please try setting 'new_file_path' in your galaxy.ini to an absolute path, try again and check whether something changes.
Martin On Mon, Jan 25, 2016 at 9:23 AM Fernandez Edgar < edgar.fernan...@umontreal.ca> wrote: > Hello Martin, > > > > Thank you! > > Your instructions for my problem with Perl package worked. > > For the URL of hmmer, it is wrong and I will report it like you suggested > it. > > > > Finally, a new error occurred for bowtie. > > Would you please take a look? > > > > My Sincere Salutations, > > > > *Edgar Fernandez* > > System Administrator (Linux) > > Direction Générale des Technologies de l'Information et de la Communication > > *Université de Montréal* > > > > PAVILLON ROGER-GAUDRY, bureau X-210 > > ( Bur. : *1-514-343-6111 poste 16568* > > > > > > *From:* Martin Čech [mailto:mar...@bx.psu.edu] > *Sent:* January-22-16 2:34 PM > *To:* Fernandez Edgar <edgar.fernan...@umontreal.ca>; > galaxy-...@bx.psu.edu > *Subject:* Re: [galaxy-dev] errors installing tool dependencies... > > > > Hi Edgar, > > for the package_perl issue please try installing updates to the > dependencies (package_gnu_coreutils and package_perl in their respective > versions) and then return to this screen and click the 'repository action' > button and then 'manage dependencies' from the menu. Uninstall both > dependencies (gnu_coreutil and perl) and then install them again. > > That should pick up the newest versions and you should be set. > > > > Regarding the hmmer that is a more prosaic problem, at the time of the > installation the software was not available at the given URL. Check the > machine's internet connection and if it is ok try downloading the file > manually. If it succeeds the problem might have been on their side and is > ok now. If it does not the problem can still be on their side and in that > case either wait a bit and try again or report the issue at > https://github.com/galaxyproject/tools-iuc/issues > > > > thank you for using Galaxy. > > > > Martin > > On Fri, Jan 22, 2016 at 2:24 PM Fernandez Edgar < > edgar.fernan...@umontreal.ca> wrote: > > Hello guys, > > > > Happy new year everyone! > > Wish you all the best! > > > > I have a couple of small problems I’ve attached as pictures… > > Can you please help me? > > > > INFO: My galaxy installation and database is updated today! > > > > My sincere salutations, > > > > *Edgar Fernandez* > > System Administrator (Linux) > > Direction Générale des Technologies de l'Information et de la Communication > > *Université de Montréal* > > > > PAVILLON ROGER-GAUDRY, bureau X-210 > > ( Bur. : *1-514-343-6111 poste 16568 * > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > >
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