Edgar,

check 'How to migrate a Galaxy instance from Mercurial Bitbucket to Git
GitHub' at https://wiki.galaxyproject.org/Develop/SourceCode

Thanks

M.
On Mon, Jan 25, 2016 at 12:29 PM Fernandez Edgar <
edgar.fernan...@umontreal.ca> wrote:

> How would I safely make the transition from mercurial to github without my
> installation?
>
>
>
> *Edgar Fernandez*
>
> System Administrator (Linux)
>
> Direction Générale des Technologies de l'Information et de la Communication
>
> *Université de Montréal*
>
>
>
> PAVILLON ROGER-GAUDRY, bureau X-210
>
> (  Bur. : *1-514-343-6111 poste 16568*
>
>
>
>
>
> *From:* Nicola Soranzo [mailto:nicola.sora...@gmail.com] *On Behalf Of *Nicola
> Soranzo
> *Sent:* January-25-16 12:22 PM
> *To:* Fernandez Edgar <edgar.fernan...@umontreal.ca>;
> galaxy-dev@lists.galaxyproject.org
>
>
> *Subject:* Re: [galaxy-dev] errors installing tool dependencies...
>
>
>
> Hi Edgar,
> indeed your bug was fixed long ago, please see
> http://dev.list.galaxyproject.org/Bismark-installation-dependencies-error-td4668186.html
>
> You should really move to the GitHub repository and update to the latest
> 15.07 or (better) to 15.10 .
>
> Cheers,
> Nicola
>
> On 25/01/16 17:09, Fernandez Edgar wrote:
>
> [galaxy@galaxy_sever galaxy-prod]$ hg id -i
>
> f6683935f81a+
>
>
>
> *Edgar Fernandez*
>
> System Administrator (Linux)
>
> Direction Générale des Technologies de l'Information et de la Communication
>
> *Université de Montréal*
>
>
>
> PAVILLON ROGER-GAUDRY, bureau X-210
>
> (  Bur. : *1-514-343-6111 poste 16568*
>
>
>
>
>
> *From:* Nicola Soranzo [mailto:nicola.sora...@gmail.com
> <nicola.sora...@gmail.com>] *On Behalf Of *Nicola Soranzo
> *Sent:* January-25-16 12:05 PM
> *To:* Fernandez Edgar <edgar.fernan...@umontreal.ca>
> <edgar.fernan...@umontreal.ca>; Martin Čech <mar...@bx.psu.edu>
> <mar...@bx.psu.edu>; galaxy-...@bx.psu.edu
> *Subject:* Re: [galaxy-dev] errors installing tool dependencies...
>
>
>
> Hi Edgar,
> this smells like an old fixed bug, what version of Galaxy are you running?
>
> Cheers,
> Nicola
>
> On 25/01/16 14:22, Fernandez Edgar wrote:
>
> Hello Martin,
>
>
>
> Thank you!
>
> Your instructions for my problem with Perl package worked.
>
> For the URL of hmmer, it is wrong and I will report it like you suggested
> it.
>
>
>
> Finally, a new error occurred for bowtie.
>
> Would you please take a look?
>
>
>
> My Sincere Salutations,
>
>
>
> *Edgar Fernandez*
>
> System Administrator (Linux)
>
> Direction Générale des Technologies de l'Information et de la Communication
>
> *Université de Montréal*
>
>
>
> PAVILLON ROGER-GAUDRY, bureau X-210
>
> (  Bur. : *1-514-343-6111 poste 16568*
>
>
>
>
>
> *From:* Martin Čech [mailto:mar...@bx.psu.edu <mar...@bx.psu.edu>]
> *Sent:* January-22-16 2:34 PM
> *To:* Fernandez Edgar <edgar.fernan...@umontreal.ca>
> <edgar.fernan...@umontreal.ca>; galaxy-...@bx.psu.edu
> *Subject:* Re: [galaxy-dev] errors installing tool dependencies...
>
>
>
> Hi Edgar,
>
> for the package_perl issue please try installing updates to the
> dependencies (package_gnu_coreutils and package_perl in their respective
> versions) and then return to this screen and click the 'repository action'
> button and then 'manage dependencies' from the menu. Uninstall both
> dependencies (gnu_coreutil and perl) and then install them again.
>
> That should pick up the newest versions and you should be set.
>
>
>
> Regarding the hmmer that is a more prosaic problem, at the time of the
> installation the software was not available at the given URL. Check the
> machine's internet connection and if it is ok try downloading the file
> manually. If it succeeds the problem might have been on their side and is
> ok now. If it does not the problem can still be on their side and in that
> case either wait a bit and try again or report the issue at
> https://github.com/galaxyproject/tools-iuc/issues
>
>
>
> thank you for using Galaxy.
>
>
>
> Martin
>
> On Fri, Jan 22, 2016 at 2:24 PM Fernandez Edgar <
> edgar.fernan...@umontreal.ca> wrote:
>
> Hello guys,
>
>
>
> Happy new year everyone!
>
> Wish you all the best!
>
>
>
> I have a couple of small problems I’ve attached as pictures…
>
> Can you please help me?
>
>
>
> INFO: My galaxy installation and database is updated today!
>
>
>
> My sincere salutations,
>
>
>
> *Edgar Fernandez*
>
> System Administrator (Linux)
>
> Direction Générale des Technologies de l'Information et de la Communication
>
> *Université de Montréal*
>
>
>
> PAVILLON ROGER-GAUDRY, bureau X-210
>
> (  Bur. : *1-514-343-6111 poste 16568         *
>
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