Re: [galaxy-user] Workshop in Chicago
Dear Galaxy and Admin Staff: I was informed by a few peope that the Galaxy workshop in Chicago is reay geared to Bioinformatic people that know how to write code. Not necessiy for general core ab staff that has data analysis needs from time to time. Can anyone shed some light on the subject please Scott Tighe -- Core Laboratory Research Staff DNA and Microarray Core Facility 149 Beaumont Ave University of Vermont HSRF 305 Burlington Vermont USA 05045 802-656-2557 Quoting Louise-Amélie Schmitt louise-amelie.schm...@embl.de: Hello, I want to write an article on Galaxy on our bioinformatics blog ( http://bioinfo-fr.net/), so I would like to know what materials I can use and under which conditions. What is the licence of the pictures (logo etc.)? Can I use them? Is there anything particular you want me to mention? Thanks, L-A ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-user] Galaxy logo: licence? (blog article project)
Hello L-A, Galaxy is open-source for all components, the license is here: http://bitbucket.org/galaxy/galaxy-central/src/3f12abbd2394/LICENSE.txt And in case you haven't seen this wiki, section 3 lists some preferred link URLs: http://wiki.g2.bx.psu.edu/Citing%20Galaxy We'll send more comments as the team has a chance to discuss. Please let us know if we can help with anything else. Thanks! Jen Galaxy team On 4/11/12 2:10 AM, Louise-Amélie Schmitt wrote: Hello, I want to write an article on Galaxy on our bioinformatics blog ( http://bioinfo-fr.net/), so I would like to know what materials I can use and under which conditions. What is the licence of the pictures (logo etc.)? Can I use them? Is there anything particular you want me to mention? Thanks, L-A ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-user] Galaxy logo: licence? (blog article project)
Hello Jen, That helped a lot, thank you! I didn't know the license also applied to the images. Best, L-A Le 11/04/2012 15:45, Jennifer Jackson a écrit : Hello L-A, Galaxy is open-source for all components, the license is here: http://bitbucket.org/galaxy/galaxy-central/src/3f12abbd2394/LICENSE.txt And in case you haven't seen this wiki, section 3 lists some preferred link URLs: http://wiki.g2.bx.psu.edu/Citing%20Galaxy We'll send more comments as the team has a chance to discuss. Please let us know if we can help with anything else. Thanks! Jen Galaxy team On 4/11/12 2:10 AM, Louise-Amélie Schmitt wrote: Hello, I want to write an article on Galaxy on our bioinformatics blog ( http://bioinfo-fr.net/), so I would like to know what materials I can use and under which conditions. What is the licence of the pictures (logo etc.)? Can I use them? Is there anything particular you want me to mention? Thanks, L-A ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-user] Megablast question
Hi Vasu, The three primary megablast databases available on the public main Galaxy instance are comprised of individual fragments/sequences of different types from many species (not assembled genomes): http://user.list.galaxyproject.org/Question-about-megablast-td4543260.html If you want to use megablast to map against specific assembled genomes, then using a local or (better) cloud instance is recommended. In your own instance, the individual genomes would be set up the way that the 'phiX174' is set up on main. To get started, please see: http://getgalaxy.org Does this address your question? If not, perhaps you could explain more what your goal is and we can try to offer help or confirm that this is the best path? Regards, Jen Galaxy team On 4/10/12 11:04 AM, shamsher jagat wrote: Hi, I am using megablast and was wondering how can I get chromosome number and coordinates of its hits. Thanks Shamesher ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-user] Workshop in Chicago
Scott, Your information is incorrect. The Galaxy Community Conference ( http://wiki.g2.bx.psu.edu/Events/GCC2012 ) will have something for everyone who is working with Galaxy, from sys admins to tool developers to core staff to end users/biologists. Our program is still in flux, and we welcome input about what you'd like to see at the conference at outre...@galaxyproject.org Best, J. From: Scott W. Tighe scott.ti...@uvm.edu Date: April 11, 2012 9:42:08 AM EDT To: galaxy-user@lists.bx.psu.edu Subject: Re: [galaxy-user] Workshop in Chicago Dear Galaxy and Admin Staff: I was informed by a few peope that the Galaxy workshop in Chicago is reay geared to Bioinformatic people that know how to write code. Not necessiy for general core ab staff that has data analysis needs from time to time. Can anyone shed some light on the subject please Scott Tighe -- Core Laboratory Research Staff DNA and Microarray Core Facility 149 Beaumont Ave University of Vermont HSRF 305 Burlington Vermont USA 05045 802-656-2557 ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
