[gentoo-commits] proj/sci:master commit in: sci-biology/BRAKER/
commit: acc57b34ce2bf932901a478ccd70a25e25da7dde Author: Andrew Ammerlaan riseup net> AuthorDate: Thu Mar 18 18:37:24 2021 + Commit: Andrew Ammerlaan riseup net> CommitDate: Thu Mar 18 18:37:24 2021 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=acc57b34 sci-biology/BRAKER: use perl_domodule Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan riseup.net> sci-biology/BRAKER/BRAKER-2.1.2.ebuild | 7 ++- 1 file changed, 2 insertions(+), 5 deletions(-) diff --git a/sci-biology/BRAKER/BRAKER-2.1.2.ebuild b/sci-biology/BRAKER/BRAKER-2.1.2.ebuild index 448ca2463..150bf55a1 100644 --- a/sci-biology/BRAKER/BRAKER-2.1.2.ebuild +++ b/sci-biology/BRAKER/BRAKER-2.1.2.ebuild @@ -1,9 +1,8 @@ -# Copyright 1999-2020 Gentoo Authors +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 -#PERL_EXPORT_PHASE_FUNCTIONS=no inherit perl-module DESCRIPTION="Gene prediction based on RNA-Seq using GeneMark-ET and AUGUSTUS" @@ -22,7 +21,6 @@ SRC_URI="https://github.com/Gaius-Augustus/BRAKER/archive/v${PV}.tar.gz -> ${P}. LICENSE="Artistic" SLOT="0" KEYWORDS="~amd64 ~x86" -IUSE="" DEPEND="" RDEPEND="${DEPEND} @@ -33,8 +31,7 @@ RDEPEND="${DEPEND} src_install(){ perl_set_version dobin scripts/*.pl - insinto ${VENDOR_LIB}/${PN} - doins scripts/*.pm + perl_domodule scripts/*.pm dodoc docs/userguide.pdf }
[gentoo-commits] proj/sci:master commit in: sci-biology/BRAKER/
commit: 0329e0493d40516a501aea07d2d9c95f8c8c2dd3 Author: Horea Christian chymera eu> AuthorDate: Fri Dec 25 18:35:04 2020 + Commit: Horea Christian gmail com> CommitDate: Fri Dec 25 18:35:04 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=0329e049 sci-biology/BRAKER: EAPI bump 7 Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Horea Christian chymera.eu> sci-biology/BRAKER/BRAKER-2.1.2.ebuild | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/sci-biology/BRAKER/BRAKER-2.1.2.ebuild b/sci-biology/BRAKER/BRAKER-2.1.2.ebuild index 908e57e51..448ca2463 100644 --- a/sci-biology/BRAKER/BRAKER-2.1.2.ebuild +++ b/sci-biology/BRAKER/BRAKER-2.1.2.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2019 Gentoo Authors +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 -PERL_EXPORT_PHASE_FUNCTIONS=no +#PERL_EXPORT_PHASE_FUNCTIONS=no inherit perl-module DESCRIPTION="Gene prediction based on RNA-Seq using GeneMark-ET and AUGUSTUS"
[gentoo-commits] proj/sci:master commit in: sci-biology/BRAKER/
commit: c7a40f0c2955843da5c85d0abbeed58351547ce1 Author: Martin Mokrejs fold natur cuni cz> AuthorDate: Thu Jul 18 17:12:10 2019 + Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Thu Jul 18 17:12:10 2019 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=c7a40f0c sci-biology/BRAKER: version bump New HOMEPAGE, SRC_URI, layout of .tar.gz tarball Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Martin Mokrejs fold.natur.cuni.cz> .../BRAKER/{BRAKER-2.1.0.ebuild => BRAKER-2.1.2.ebuild} | 15 +++ 1 file changed, 7 insertions(+), 8 deletions(-) diff --git a/sci-biology/BRAKER/BRAKER-2.1.0.ebuild b/sci-biology/BRAKER/BRAKER-2.1.2.ebuild similarity index 79% rename from sci-biology/BRAKER/BRAKER-2.1.0.ebuild rename to sci-biology/BRAKER/BRAKER-2.1.2.ebuild index 13d63d4b8..908e57e51 100644 --- a/sci-biology/BRAKER/BRAKER-2.1.0.ebuild +++ b/sci-biology/BRAKER/BRAKER-2.1.2.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2019 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=5 @@ -8,9 +8,10 @@ inherit perl-module DESCRIPTION="Gene prediction based on RNA-Seq using GeneMark-ET and AUGUSTUS" # http://bioinf.uni-greifswald.de/bioinf/publications/pag2015.pdf -HOMEPAGE="http://bioinf.uni-greifswald.de/bioinf/braker +HOMEPAGE="https://github.com/Gaius-Augustus/BRAKER + http://bioinf.uni-greifswald.de/bioinf/braker http://bioinf.uni-greifswald.de/augustus/downloads; -SRC_URI="http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER_v"${PV}".tar.gz -> ${P}.tar.gz" +SRC_URI="https://github.com/Gaius-Augustus/BRAKER/archive/v${PV}.tar.gz -> ${P}.tar.gz" # Example data for testing the BRAKER2 pipeline is available at # http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER2examples.tar.gz (1.1 GB). @@ -29,14 +30,12 @@ RDEPEND="${DEPEND} sci-biology/augustus" #>=sci-biology/GeneMark_ET-bin-4.29" -S="${WORKDIR}"/BRAKER_v"${PV}" - src_install(){ perl_set_version - dobin *.pl + dobin scripts/*.pl insinto ${VENDOR_LIB}/${PN} - doins *.pm - dodoc userguide.pdf + doins scripts/*.pm + dodoc docs/userguide.pdf } pkg_postinst(){
[gentoo-commits] proj/sci:master commit in: sci-biology/BRAKER/
commit: 3724acdd4d192ac400d81a94f91e957c0e832ccd Author: Martin Mokrejs fold natur cuni cz> AuthorDate: Sat Mar 31 00:15:01 2018 + Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Sat Mar 31 00:15:01 2018 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=3724acdd sci-biology/BRAKER: version bump, update LICENSE Package-Manager: Portage-2.3.24, Repoman-2.3.6 .../{BRAKER-2.ebuild => BRAKER-2.1.0.ebuild} | 30 +- 1 file changed, 12 insertions(+), 18 deletions(-) diff --git a/sci-biology/BRAKER/BRAKER-2.ebuild b/sci-biology/BRAKER/BRAKER-2.1.0.ebuild similarity index 58% rename from sci-biology/BRAKER/BRAKER-2.ebuild rename to sci-biology/BRAKER/BRAKER-2.1.0.ebuild index b4c752457..13d63d4b8 100644 --- a/sci-biology/BRAKER/BRAKER-2.ebuild +++ b/sci-biology/BRAKER/BRAKER-2.1.0.ebuild @@ -10,15 +10,17 @@ DESCRIPTION="Gene prediction based on RNA-Seq using GeneMark-ET and AUGUSTUS" # http://bioinf.uni-greifswald.de/bioinf/publications/pag2015.pdf HOMEPAGE="http://bioinf.uni-greifswald.de/bioinf/braker http://bioinf.uni-greifswald.de/augustus/downloads; -SRC_URI="http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER"${PV}".tar.gz -> ${P}.tar.gz" -# Download BRAKER1 from http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1.tar.gz. -# The most recent release is version 1.8, from December 15th 2015. -# Example data for testing the BRAKER1 pipeline is available at -# http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1examples.tar.gz (1.1 GB). - -LICENSE="GPL-3" +SRC_URI="http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER_v"${PV}".tar.gz -> ${P}.tar.gz" +# Example data for testing the BRAKER2 pipeline is available at +# http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER2examples.tar.gz (1.1 GB). + +# BRAKER2 is using the Artistic-1.0 version without clause 8 about +# commercial distribution +# See discussion at https://opensource.org/licenses/artistic-license-1.0 +# Practically the license is same as http://dev.perl.org/licenses/artistic.html +LICENSE="Artistic" SLOT="0" -KEYWORDS="" +KEYWORDS="~amd64 ~x86" IUSE="" DEPEND="" @@ -26,23 +28,15 @@ RDEPEND="${DEPEND} dev-perl/Scalar-Util-Numeric sci-biology/augustus" #>=sci-biology/GeneMark_ET-bin-4.29" -# -# BUG: -# this causes: -# [blocks B ]
[gentoo-commits] proj/sci:master commit in: sci-biology/BRAKER/
commit: e506aabb717f6536e683c88a998e7b566aab8164 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Mon Jan 8 14:11:10 2018 + Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Mon Jan 8 14:11:10 2018 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=e506aabb sci-biology/BRAKER: version bump Package-Manager: Portage-2.3.19, Repoman-2.3.6 sci-biology/BRAKER/{BRAKER-1.9.ebuild => BRAKER-2.ebuild} | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/sci-biology/BRAKER/BRAKER-1.9.ebuild b/sci-biology/BRAKER/BRAKER-2.ebuild similarity index 89% rename from sci-biology/BRAKER/BRAKER-1.9.ebuild rename to sci-biology/BRAKER/BRAKER-2.ebuild index 7c814763f..b4c752457 100644 --- a/sci-biology/BRAKER/BRAKER-1.9.ebuild +++ b/sci-biology/BRAKER/BRAKER-2.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2018 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 EAPI=5 @@ -10,7 +10,7 @@ DESCRIPTION="Gene prediction based on RNA-Seq using GeneMark-ET and AUGUSTUS" # http://bioinf.uni-greifswald.de/bioinf/publications/pag2015.pdf HOMEPAGE="http://bioinf.uni-greifswald.de/bioinf/braker http://bioinf.uni-greifswald.de/augustus/downloads; -SRC_URI=" http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1_v"${PV}".tar.gz -> ${P}.tar.gz" +SRC_URI="http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER"${PV}".tar.gz -> ${P}.tar.gz" # Download BRAKER1 from http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1.tar.gz. # The most recent release is version 1.8, from December 15th 2015. # Example data for testing the BRAKER1 pipeline is available at @@ -31,7 +31,7 @@ RDEPEND="${DEPEND} # this causes: # [blocks B ]
[gentoo-commits] proj/sci:master commit in: sci-biology/BRAKER/
commit: c976d64e8e6458c02d70ec3aeb8a883e86c26e37 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Sat Dec 3 18:51:08 2016 + Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Sat Dec 3 18:51:08 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=c976d64e sci-biology/BRAKER: version bump, point to additional dependency Package-Manager: portage-2.3.2 sci-biology/BRAKER/{BRAKER-1.8.ebuild => BRAKER-1.9.ebuild} | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/sci-biology/BRAKER/BRAKER-1.8.ebuild b/sci-biology/BRAKER/BRAKER-1.9.ebuild similarity index 90% rename from sci-biology/BRAKER/BRAKER-1.8.ebuild rename to sci-biology/BRAKER/BRAKER-1.9.ebuild index 439b5c2..4074279 100644 --- a/sci-biology/BRAKER/BRAKER-1.8.ebuild +++ b/sci-biology/BRAKER/BRAKER-1.9.ebuild @@ -26,8 +26,7 @@ DEPEND="" RDEPEND="${DEPEND} dev-perl/Scalar-Util-Numeric sci-biology/augustus" -# Current version of BRAKER1 1.8 requires GeneMark-ET v.4.29 (or up). - + #>=sci-biology/GeneMark_ET-bin-4.29" # # BUG: # this causes: @@ -48,6 +47,6 @@ src_install(){ } pkg_postinst(){ - einfo "Please install GeneMark-ET >= v.4.29 after obtaininig a license from" + einfo "Please install sci-biology/GeneMark_ET after obtaininig a license and binaries from" einfo "http://exon.gatech.edu/GeneMark/gmes_instructions.html; }
[gentoo-commits] proj/sci:master commit in: sci-biology/BRAKER/
commit: a87311f012ae7f20a57d4302b78456e15fa2b600 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Fri Jul 1 10:46:11 2016 + Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Fri Jul 1 10:46:11 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=a87311f0 sci-biology/BRAKER: fix PERL5INC Package-Manager: portage-2.2.28 sci-biology/BRAKER/BRAKER-1.8.ebuild | 4 1 file changed, 4 insertions(+) diff --git a/sci-biology/BRAKER/BRAKER-1.8.ebuild b/sci-biology/BRAKER/BRAKER-1.8.ebuild index 208b741..439b5c2 100644 --- a/sci-biology/BRAKER/BRAKER-1.8.ebuild +++ b/sci-biology/BRAKER/BRAKER-1.8.ebuild @@ -35,6 +35,10 @@ RDEPEND="${DEPEND} S="${WORKDIR}"/BRAKER_v"${PV}" +src_prepare(){ + sed -e 's/^use helpMod/use BRAKER::helpMod/' -i braker.pl || die +} + src_install(){ perl_set_version dobin *.pl
[gentoo-commits] proj/sci:master commit in: sci-biology/BRAKER/
commit: 51cbdef2f5cdf735664fb3869a98c63e31d96078 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Fri Jul 1 10:40:17 2016 + Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Fri Jul 1 10:40:17 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=51cbdef2 sci-biology/BRAKER: fix DEPENDency on dev-perl/Scalar-Util-Numeric Package-Manager: portage-2.2.28 sci-biology/BRAKER/BRAKER-1.8.ebuild | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sci-biology/BRAKER/BRAKER-1.8.ebuild b/sci-biology/BRAKER/BRAKER-1.8.ebuild index ebf7e28..208b741 100644 --- a/sci-biology/BRAKER/BRAKER-1.8.ebuild +++ b/sci-biology/BRAKER/BRAKER-1.8.ebuild @@ -24,7 +24,7 @@ IUSE="" DEPEND="" RDEPEND="${DEPEND} - virtual/perl-Scalar-List-Utils + dev-perl/Scalar-Util-Numeric sci-biology/augustus" # Current version of BRAKER1 1.8 requires GeneMark-ET v.4.29 (or up).
[gentoo-commits] proj/sci:master commit in: sci-biology/BRAKER/
commit: c619dfb295649b810b3534ebb55ff5c69ed74482 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Fri Jul 1 10:28:17 2016 + Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Fri Jul 1 10:28:17 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=c619dfb2 sci-biology/BRAKER: fix S Package-Manager: portage-2.2.28 sci-biology/BRAKER/BRAKER-1.8.ebuild | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sci-biology/BRAKER/BRAKER-1.8.ebuild b/sci-biology/BRAKER/BRAKER-1.8.ebuild index 11fe269..ebf7e28 100644 --- a/sci-biology/BRAKER/BRAKER-1.8.ebuild +++ b/sci-biology/BRAKER/BRAKER-1.8.ebuild @@ -33,7 +33,7 @@ RDEPEND="${DEPEND} # this causes: # [blocks B ]
[gentoo-commits] proj/sci:master commit in: sci-biology/BRAKER/
commit: 0c868df8f4ba2220ce6b98584c94e23870f0e308 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Sat Feb 27 20:45:25 2016 + Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Sat Feb 27 20:45:25 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=0c868df8 sci-biology/BRAKER: add einfo referring to GeneMark-ET requirement Package-Manager: portage-2.2.26 sci-biology/BRAKER/BRAKER-1.8.ebuild | 7 +++ 1 file changed, 7 insertions(+) diff --git a/sci-biology/BRAKER/BRAKER-1.8.ebuild b/sci-biology/BRAKER/BRAKER-1.8.ebuild index ca09108..11fe269 100644 --- a/sci-biology/BRAKER/BRAKER-1.8.ebuild +++ b/sci-biology/BRAKER/BRAKER-1.8.ebuild @@ -26,6 +26,8 @@ DEPEND="" RDEPEND="${DEPEND} virtual/perl-Scalar-List-Utils sci-biology/augustus" +# Current version of BRAKER1 1.8 requires GeneMark-ET v.4.29 (or up). + # # BUG: # this causes: @@ -40,3 +42,8 @@ src_install(){ doins *.pm dodoc README.braker } + +pkg_postinst(){ + einfo "Please install GeneMark-ET >= v.4.29 after obtaininig a license from" + einfo "http://exon.gatech.edu/GeneMark/gmes_instructions.html; +}
[gentoo-commits] proj/sci:master commit in: sci-biology/BRAKER/
commit: 44918a4a9d9844c8d805694864e978e2c5306eec Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Sat Feb 27 20:38:11 2016 + Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Sat Feb 27 20:38:11 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=44918a4a sci-biology/BRAKER: version bump; update to a new LICENSE; update HOMEPAGE and SRC_URI Package-Manager: portage-2.2.26 .../BRAKER/{BRAKER-20150330.ebuild => BRAKER-1.8.ebuild} | 16 +++- 1 file changed, 11 insertions(+), 5 deletions(-) diff --git a/sci-biology/BRAKER/BRAKER-20150330.ebuild b/sci-biology/BRAKER/BRAKER-1.8.ebuild similarity index 55% rename from sci-biology/BRAKER/BRAKER-20150330.ebuild rename to sci-biology/BRAKER/BRAKER-1.8.ebuild index a6ae578..ca09108 100644 --- a/sci-biology/BRAKER/BRAKER-20150330.ebuild +++ b/sci-biology/BRAKER/BRAKER-1.8.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2016 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ @@ -9,17 +9,23 @@ inherit perl-module DESCRIPTION="Gene prediction based on RNA-Seq using GeneMark-ET and AUGUSTUS" # http://bioinf.uni-greifswald.de/bioinf/publications/pag2015.pdf -HOMEPAGE="http://bioinf.uni-greifswald.de/augustus/downloads; -SRC_URI=" http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1.tar.gz -> ${P}.tar.gz" +HOMEPAGE="http://bioinf.uni-greifswald.de/bioinf/braker + http://bioinf.uni-greifswald.de/augustus/downloads; +SRC_URI=" http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1_v"${PV}".tar.gz -> ${P}.tar.gz" +# Download BRAKER1 from http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1.tar.gz. +# The most recent release is version 1.8, from December 15th 2015. +# Example data for testing the BRAKER1 pipeline is available at +# http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1examples.tar.gz (1.1 GB). -LICENSE="Artistic" +LICENSE="GPL-3" SLOT="0" KEYWORDS="" IUSE="" DEPEND="" RDEPEND="${DEPEND} - virtual/perl-Scalar-List-Utils" + virtual/perl-Scalar-List-Utils + sci-biology/augustus" # # BUG: # this causes:
[gentoo-commits] proj/sci:master commit in: sci-biology/BRAKER/
commit: aa013962dcd3a5c45b467c96cda43c4bd8e33fad Author: Martin Mokrejš mmokrejs AT fold DOT natur DOT cuni DOT cz AuthorDate: Mon Apr 27 11:38:58 2015 + Commit: Martin Mokrejs mmokrejs AT fold DOT natur DOT cuni DOT cz CommitDate: Mon Apr 27 11:38:58 2015 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=aa013962 sci-biology/BRAKER: new package; somehow RDEPENDs are installed wrongly: Can't locate Scalar/Util/Numeric.pm in @INC (you may need to install the Scalar::Util::Numeric module) Package-Manager: portage-2.2.18 sci-biology/BRAKER/BRAKER-20150330.ebuild | 32 +++ sci-biology/BRAKER/ChangeLog | 11 +++ sci-biology/BRAKER/metadata.xml | 9 + 3 files changed, 52 insertions(+) diff --git a/sci-biology/BRAKER/BRAKER-20150330.ebuild b/sci-biology/BRAKER/BRAKER-20150330.ebuild new file mode 100644 index 000..9ee5465 --- /dev/null +++ b/sci-biology/BRAKER/BRAKER-20150330.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +PERL_EXPORT_PHASE_FUNCTIONS=no +inherit perl-module + +DESCRIPTION=Gene prediction based on RNA-Seq using GeneMark-ET and AUGUSTUS +# http://bioinf.uni-greifswald.de/bioinf/publications/pag2015.pdf +HOMEPAGE=http://bioinf.uni-greifswald.de/augustus/downloads; +SRC_URI= http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1.tar.gz - ${P}.tar.gz + +LICENSE=Artistic +SLOT=0 +KEYWORDS= +IUSE= + +DEPEND= +RDEPEND=${DEPEND} + virtual/perl-Scalar-List-Utils + +S=${WORKDIR} + +src_install(){ + perl_set_version + dobin *.pl + insinto ${VENDOR_LIB}/${PN} + doins *.pm + dodoc README.braker +} diff --git a/sci-biology/BRAKER/ChangeLog b/sci-biology/BRAKER/ChangeLog new file mode 100644 index 000..0a1fbb2 --- /dev/null +++ b/sci-biology/BRAKER/ChangeLog @@ -0,0 +1,11 @@ +# ChangeLog for sci-biology/BRAKER +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*BRAKER-20150330 (27 Apr 2015) + + 27 Apr 2015; Martin Mokrejs mmokr...@fold.natur.cuni.cz + +BRAKER-20150330.ebuild, +metadata.xml: + sci-biology/BRAKER: new package; somehow RDEPENDs are installed wrongly: Can't + locate Scalar/Util/Numeric.pm in @INC (you may need to install the + Scalar::Util::Numeric module) diff --git a/sci-biology/BRAKER/metadata.xml b/sci-biology/BRAKER/metadata.xml new file mode 100644 index 000..2bc8930 --- /dev/null +++ b/sci-biology/BRAKER/metadata.xml @@ -0,0 +1,9 @@ +?xml version=1.0 encoding=UTF-8? +!DOCTYPE pkgmetadata SYSTEM http://www.gentoo.org/dtd/metadata.dtd; +pkgmetadata + herdsci-biology/herd + maintainer +emailmmokr...@fold.natur.cuni.cz/email +nameMartin Mokrejs/name + /maintainer +/pkgmetadata
[gentoo-commits] proj/sci:master commit in: sci-biology/BRAKER/
commit: 03b89a8b4872d92052038aab0a9f64d7bc13c65a Author: Martin Mokrejš mmokrejs AT fold DOT natur DOT cuni DOT cz AuthorDate: Mon Apr 27 18:30:06 2015 + Commit: Martin Mokrejs mmokrejs AT fold DOT natur DOT cuni DOT cz CommitDate: Mon Apr 27 18:30:06 2015 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=03b89a8b sci-biology/BRAKER: added a note about perl-core/Scalar-List-Utils blocking virtual/perl-Scalar-List-Utils (huh?) Package-Manager: portage-2.2.18 sci-biology/BRAKER/BRAKER-20150330.ebuild | 4 1 file changed, 4 insertions(+) diff --git a/sci-biology/BRAKER/BRAKER-20150330.ebuild b/sci-biology/BRAKER/BRAKER-20150330.ebuild index 9ee5465..63fe5f1 100644 --- a/sci-biology/BRAKER/BRAKER-20150330.ebuild +++ b/sci-biology/BRAKER/BRAKER-20150330.ebuild @@ -20,6 +20,10 @@ IUSE= DEPEND= RDEPEND=${DEPEND} virtual/perl-Scalar-List-Utils +# +# BUG: +# this causes: +# [blocks B ] perl-core/Scalar-List-Utils-1.380.0 (perl-core/Scalar-List-Utils-1.380.0 is blocking virtual/perl-Scalar-List-Utils-1.380.0) S=${WORKDIR}