[med-svn] [Git][med-team/biomaj3] Pushed new tag upstream/3.1.24

2024-04-18 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag upstream/3.1.24 at Debian Med / biomaj3 -- View it on GitLab: https://salsa.debian.org/med-team/biomaj3/-/tree/upstream/3.1.24 You're receiving this email because of your account on salsa.debian.org. ___ debian-med

[med-svn] [Git][med-team/biomaj3] Pushed new tag debian/3.1.24-1

2024-04-18 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag debian/3.1.24-1 at Debian Med / biomaj3 -- View it on GitLab: https://salsa.debian.org/med-team/biomaj3/-/tree/debian/3.1.24-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med

[med-svn] [Git][med-team/biomaj3][pristine-tar] pristine-tar data for biomaj3_3.1.24.orig.tar.xz

2024-04-18 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch pristine-tar at Debian Med / biomaj3 Commits: a39e94da by Charles Plessy at 2024-04-19T09:18:39+09:00 pristine-tar data for biomaj3_3.1.24.orig.tar.xz - - - - - 2 changed files: - + biomaj3_3.1.24.orig.tar.xz.delta - + biomaj3_3.1.24.orig.tar.xz.id Changes

[med-svn] [Git][med-team/bcftools][master] 4 commits: New upstream version 1.20

2024-04-17 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch master at Debian Med / bcftools Commits: 83c9ef0f by Charles Plessy at 2024-04-18T08:51:21+09:00 New upstream version 1.20 - - - - - 217daed1 by Charles Plessy at 2024-04-18T08:51:21+09:00 routine-update: New upstream version - - - - - cf9eccc1 by Charles

[med-svn] [Git][med-team/bowtie2] Pushed new tag upstream/2.5.3

2024-04-16 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag upstream/2.5.3 at Debian Med / bowtie2 -- View it on GitLab: https://salsa.debian.org/med-team/bowtie2/-/tree/upstream/2.5.3 You're receiving this email because of your account on salsa.debian.org. ___ debian-med

[med-svn] [Git][med-team/bowtie2] Pushed new tag debian/2.5.3-1

2024-04-16 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag debian/2.5.3-1 at Debian Med / bowtie2 -- View it on GitLab: https://salsa.debian.org/med-team/bowtie2/-/tree/debian/2.5.3-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med

[med-svn] [Git][med-team/bowtie2][pristine-tar] pristine-tar data for bowtie2_2.5.3.orig.tar.gz

2024-04-16 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch pristine-tar at Debian Med / bowtie2 Commits: 84939e42 by Charles Plessy at 2024-04-17T08:56:22+09:00 pristine-tar data for bowtie2_2.5.3.orig.tar.gz - - - - - 2 changed files: - + bowtie2_2.5.3.orig.tar.gz.delta - + bowtie2_2.5.3.orig.tar.gz.id Changes

Re: Debian-Med policy proposal: 64-bit & little-endian only* for new packages

2024-03-29 Thread Charles Plessy
for May 1st, shortly after the R 4.4 release. Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from home https://framapiaf.org/@charles_plessy - You

Re: Another 2-clause BSD or a mistake?

2024-03-17 Thread Charles Plessy
Le Sat, Mar 16, 2024 at 10:40:16PM -0700, Soren Stoutner a écrit : > License: BSD-custom-2-clause I would recommend a different abbreviation. BSD-custom-2-clause may give the false impression that this is a standard BSD 2-clause license where the copyright holders are not the regents of the

[med-svn] [Git][med-team/last-align] Pushed new tag upstream/1542

2024-02-20 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag upstream/1542 at Debian Med / last-align -- View it on GitLab: https://salsa.debian.org/med-team/last-align/-/tree/upstream/1542 You're receiving this email because of your account on salsa.debian.org. ___ debian-med

[med-svn] [Git][med-team/last-align] Pushed new tag debian/1542-1

2024-02-20 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag debian/1542-1 at Debian Med / last-align -- View it on GitLab: https://salsa.debian.org/med-team/last-align/-/tree/debian/1542-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med

[med-svn] [Git][med-team/last-align][pristine-tar] pristine-tar data for last-align_1542.orig.tar.xz

2024-02-20 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch pristine-tar at Debian Med / last-align Commits: 04c79abe by Charles Plessy at 2024-02-21T08:04:49+09:00 pristine-tar data for last-align_1542.orig.tar.xz - - - - - 2 changed files: - + last-align_1542.orig.tar.xz.delta - + last-align_1542.orig.tar.xz.id

[med-svn] [Git][med-team/last-align] Pushed new tag debian/1540-1

2024-02-04 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag debian/1540-1 at Debian Med / last-align -- View it on GitLab: https://salsa.debian.org/med-team/last-align/-/tree/debian/1540-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med

[med-svn] [Git][med-team/last-align] Pushed new tag upstream/1540

2024-02-04 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag upstream/1540 at Debian Med / last-align -- View it on GitLab: https://salsa.debian.org/med-team/last-align/-/tree/upstream/1540 You're receiving this email because of your account on salsa.debian.org. ___ debian-med

[med-svn] [Git][med-team/last-align][upstream] New upstream version 1540

2024-02-04 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch upstream at Debian Med / last-align Commits: d47302cc by Charles Plessy at 2024-02-05T09:27:01+09:00 New upstream version 1540 - - - - - 30 changed files: - bin/last-dotplot - bin/last-train - bin/maf-cut - + data/RY128-12.seed - doc/FAQ.rst - doc/last

[med-svn] [Git][med-team/last-align][pristine-tar] pristine-tar data for last-align_1540.orig.tar.xz

2024-02-04 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch pristine-tar at Debian Med / last-align Commits: 99029b71 by Charles Plessy at 2024-02-05T09:27:08+09:00 pristine-tar data for last-align_1540.orig.tar.xz - - - - - 2 changed files: - + last-align_1540.orig.tar.xz.delta - + last-align_1540.orig.tar.xz.id

[med-svn] [Git][med-team/last-align][master] 4 commits: routine-update: New upstream version

2024-02-04 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch master at Debian Med / last-align Commits: 0629d171 by Charles Plessy at 2024-02-05T09:27:00+09:00 routine-update: New upstream version - - - - - d47302cc by Charles Plessy at 2024-02-05T09:27:01+09:00 New upstream version 1540 - - - - - 77902401 by Charles

Bug#1061344: User input needed: Stop supporting 32 bit architectures with emboss (Was: emboss-lib: identified for time_t transition but no ABI in shlibs)

2024-01-30 Thread Charles Plessy
Hi Andreas, I agree that we can remove EMBOSS in all 32-bit platforms. I think that a large fraction of the scientific field has no appetite to do any extra volunteer work to such as accepting our patches to support scientific computations on 32-bit systems in 15 years... Have a nice day,

Bug#1061344: User input needed: Stop supporting 32 bit architectures with emboss (Was: emboss-lib: identified for time_t transition but no ABI in shlibs)

2024-01-30 Thread Charles Plessy
Hi Andreas, I agree that we can remove EMBOSS in all 32-bit platforms. I think that a large fraction of the scientific field has no appetite to do any extra volunteer work to such as accepting our patches to support scientific computations on 32-bit systems in 15 years... Have a nice day,

Re: User input needed: Stop supporting 32 bit architectures with emboss (Was: emboss-lib: identified for time_t transition but no ABI in shlibs)

2024-01-30 Thread Charles Plessy
Hi Andreas, I agree that we can remove EMBOSS in all 32-bit platforms. I think that a large fraction of the scientific field has no appetite to do any extra volunteer work to such as accepting our patches to support scientific computations on 32-bit systems in 15 years... Have a nice day,

Bug#1049459: reverse dependencies

2024-01-03 Thread Charles Plessy
u, me, or their maintainer. I am looking forward seeing the end of the mime-support transition ! Have a nice day, -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Tooting from work, https://fediscience.org/@charles_plessy Tooting from home,

Re: Aw: Re: Community renewal and project obsolescence

2023-12-30 Thread Charles Plessy
reedom is deeply connected to everybodys futures. Well, it is too late for invoking Santa Claus, but this said, best wishes for 2024 ! Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/de

[med-svn] [Git][med-team/last-align][master] 7 commits: last*5* commands were removed recently upstream

2023-12-17 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch master at Debian Med / last-align Commits: 418bcdcb by Charles Plessy at 2023-12-18T02:49:01+00:00 last*5* commands were removed recently upstream - - - - - ac00796e by Charles Plessy at 2023-12-18T02:49:54+00:00 New upstream version 1519 - - - - - f186b658

[med-svn] [Git][med-team/last-align] Pushed new tag debian/1519-1

2023-12-17 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag debian/1519-1 at Debian Med / last-align -- View it on GitLab: https://salsa.debian.org/med-team/last-align/-/tree/debian/1519-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med

[med-svn] [Git][med-team/last-align] Pushed new tag upstream/1519

2023-12-17 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag upstream/1519 at Debian Med / last-align -- View it on GitLab: https://salsa.debian.org/med-team/last-align/-/tree/upstream/1519 You're receiving this email because of your account on salsa.debian.org. ___ debian-med

[med-svn] [Git][med-team/last-align][upstream] New upstream version 1519

2023-12-17 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch upstream at Debian Med / last-align Commits: ac00796e by Charles Plessy at 2023-12-18T02:49:54+00:00 New upstream version 1519 - - - - - 30 changed files: - .gitignore - bin/last-dotplot - bin/last-train - + data/RY64-13.seed - doc/last-cookbook.rst - doc

[med-svn] [Git][med-team/last-align][pristine-tar] pristine-tar data for last-align_1519.orig.tar.xz

2023-12-17 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch pristine-tar at Debian Med / last-align Commits: d9c4409e by Charles Plessy at 2023-12-18T02:49:59+00:00 pristine-tar data for last-align_1519.orig.tar.xz - - - - - 2 changed files: - + last-align_1519.orig.tar.xz.delta - + last-align_1519.orig.tar.xz.id

Bug#1057703: Please stop build-depending on mime-support

2023-12-12 Thread Charles Plessy
Le Thu, Dec 07, 2023 at 08:14:30PM +0900, Charles Plessy a écrit : > > Please either drop the build-depend on mime-support or replace it by > media-types. > > If you are busy I can offer to NMU your package. I would like to remove > mime-support from the archive. Dear Al

Bug#1057702: Please build-depend on media-types instead of mime.support

2023-12-12 Thread Charles Plessy
Le Thu, Dec 07, 2023 at 08:10:49PM +0900, Charles Plessy a écrit : > > the file /etc/mime.types is now provided by the package media-types. > Please build-depend on it instead of media.types. > > If you are busy I can offer to NMU your package. I would like to remove >

Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics)

2023-12-08 Thread Charles Plessy
Hi Graham and Andreas, Le Thu, Dec 07, 2023 at 01:37:02PM -0100, Graham Inggs a écrit : > > Also, why do r-bioc-netsam and r-bioc-org.hs.eg.db not even appear on > the tracker? I do not know for r-bioc-netsam, but for r-bioc-org.hs.eg.db and similar packages, it is because it is an "annotation

Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics)

2023-12-08 Thread Charles Plessy
Hi Graham and Andreas, Le Thu, Dec 07, 2023 at 01:37:02PM -0100, Graham Inggs a écrit : > > Also, why do r-bioc-netsam and r-bioc-org.hs.eg.db not even appear on > the tracker? I do not know for r-bioc-netsam, but for r-bioc-org.hs.eg.db and similar packages, it is because it is an "annotation

Bug#1049459: reverse dependencies

2023-12-07 Thread Charles Plessy
against courier and jool. Can I ask you to fix node-mime-types? You are Uploader of it… Looking at the source code, it seems that node-mime-types does not need mime-support at all. But if it does please build depend on media-types instead. Have a nice day, Charles --

Bug#1057703: Please stop build-depending on mime-support

2023-12-07 Thread Charles Plessy
Source: jool Severity: normal X-Debbugs-Cc: ple...@debian.org Dear Alberto, mime-support is a transitional package replaced by media-types. It provides the file /etc/mime.types. But looking at the source code of jool, it seems that you do not need it at all. Please either drop the

Bug#1057702: Please build-depend on media-types instead of mime.support

2023-12-07 Thread Charles Plessy
Source: courier Severity: normal X-Debbugs-Cc: ple...@debian.org Dear Markus, the file /etc/mime.types is now provided by the package media-types. Please build-depend on it instead of media.types. If you are busy I can offer to NMU your package. I would like to remove mime-support from the

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-27 Thread Charles Plessy
ake place in April or May 2024. As time passes I am starting to wonder if we should just skip the current one... Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-27 Thread Charles Plessy
ake place in April or May 2024. As time passes I am starting to wonder if we should just skip the current one... Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting

Re: General Resolution: Statement about the EU Legislation "Cyber Resilience Act and Product Liability Directive"

2023-11-19 Thread Charles Plessy
Hello everybody, thank you for preparing this! Quick comments form somebody who does not have the time to follow debian-vote: "make the best system we can": Maybe this is a good opportunity to point at our social contract, to show to the readers who have no idea what Debian is how important

Bug#1049459: RM: mime-support -- ROM; Transition over

2023-11-14 Thread Charles Plessy
Control: tag -1 - moreinfo Dear Scott, the transition is over; to the best of my knowledge, no package depends exclusively on mime-support, and in all alternatives it comes second after media-types. Please remove mime-support. Have a nice day, Charles -- Charles Plessy

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-10 Thread Charles Plessy
Le Fri, Nov 10, 2023 at 11:30:13PM +0100, Sebastian Ramacher a écrit : > > Can you please clarify whether you are talking about new dependencies or > reverse dependencies above? Thanks. Hi Sebastian, I am talking about the reverse-dependencies of the packages that we need to upload to NEW.

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-10 Thread Charles Plessy
Le Fri, Nov 10, 2023 at 11:30:13PM +0100, Sebastian Ramacher a écrit : > > Can you please clarify whether you are talking about new dependencies or > reverse dependencies above? Thanks. Hi Sebastian, I am talking about the reverse-dependencies of the packages that we need to upload to NEW.

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-10 Thread Charles Plessy
omplete the checks and package the new dependencies and submit the to NEW next week. I suppose that we just have to go through he whole process and notify you when it is done? Have a good week-end, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian M

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-10 Thread Charles Plessy
omplete the checks and package the new dependencies and submit the to NEW next week. I suppose that we just have to go through he whole process and notify you when it is done? Have a good week-end, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian M

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-09 Thread Charles Plessy
d if you think that next time you need to monitor our monitoring, I can for instance toot regularly under a pre-decided hashtag about our preparation and you can review it at the time of the transition, (in about 5 months; the clock is ticking). Have a nice day, Charles -- Charles Plessy

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-09 Thread Charles Plessy
d if you think that next time you need to monitor our monitoring, I can for instance toot regularly under a pre-decided hashtag about our preparation and you can review it at the time of the transition, (in about 5 months; the clock is ticking). Have a nice day, Charles -- Charles Plessy

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-07 Thread Charles Plessy
u if and how much the transition will require the processing of packages through the NEW queue. Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from work,

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-07 Thread Charles Plessy
u if and how much the transition will require the processing of packages through the NEW queue. Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from work,

Bug#1005644: Intent to NMU pillow (Re: Bug#1005644: python3-pil: should depend on "media-types | mime-support")

2023-11-04 Thread Charles Plessy
Le Wed, Oct 25, 2023 at 10:23:44PM +0900, Charles Plessy a écrit : > > I intend to NMU pillow to DELAYED/15 soon, unless you plan to remove the > dependency on mime-support by yourself in a reasonable delay. Hello Matthias, I uploaded to DELAYED/15 on the 29th. Here is the debdiff.

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-02 Thread Charles Plessy
eclare a reverse-dependency to an existing Bioc package that we ship in Debian. Therefore, I do not expect that this transition will require NEW processing. https://bioconductor.org/news/bioc_3_18_release/ Graham, please let us know when we can start uploading. Have a nice day,

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-02 Thread Charles Plessy
eclare a reverse-dependency to an existing Bioc package that we ship in Debian. Therefore, I do not expect that this transition will require NEW processing. https://bioconductor.org/news/bioc_3_18_release/ Graham, please let us know when we can start uploading. Have a nice day,

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-01 Thread Charles Plessy
e dependency chain will change again this time. With this in mind, can I ask why is it necessary to upload to experimental first? We never had to do it before, and it is a lot of extra work. Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan De

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-01 Thread Charles Plessy
e dependency chain will change again this time. With this in mind, can I ask why is it necessary to upload to experimental first? We never had to do it before, and it is a lot of extra work. Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan De

Bug#1005644: Intent to NMU pillow (Re: Bug#1005644: python3-pil: should depend on "media-types | mime-support")

2023-10-25 Thread Charles Plessy
atthias, I intend to NMU pillow to DELAYED/15 soon, unless you plan to remove the dependency on mime-support by yourself in a reasonable delay. Cheers, Charles, maintainer of the media-types, mailcap and mime-support packages. -- Charles Plessy Nagahama, Yomitan,

Bug#1049459: RM: mime-support -- ROM; Transition over

2023-10-22 Thread Charles Plessy
Le Tue, Oct 10, 2023 at 06:56:43AM +0900, Charles Plessy a écrit : > > python3-pil depends on mime-support | python3-pil.imagetk, and > python3-pil.imagetk does not depend on mime-support, thus python3-pil is > installable without mime-support, isn't it? > > Could you please r

Bug#1049459: RM: mime-support -- ROM; Transition over

2023-10-09 Thread Charles Plessy
to think about it anymore, and focus on the future. If you prefer I NMU pillow instead, please let me know. Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Tooting from work, https://fediscience.org/@charles_plessy Tooting from home

[Bioc-devel] KEGGREST is broken and has a long reverse-dependency chain.

2023-09-21 Thread Charles Plessy
wondering if this bug would be a low-hanging fruit for somebody else in this list? Have a nice day, Charles Plessy -- Charles Plessy - - ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ - - charles.ple...@oist.jp Okinawa Institute of Science and Technology Graduate University Senior staff scientist ~~ Lusc

Bug#1052137: run-mailcap.1: some remarks and editorial changes for this man page

2023-09-18 Thread Charles Plessy
Dear Bjarni, thank you for your report about this manpage and the other ones of this package. I am considering refactoring the whole package as a Perl module that might be called App::Mailcap, and as part of this the manual pages would be converted to Perldoc format. Therefore, I do not intend

Bug#1009768: s3fs-fuse: Please replace mime-support with media-types in Depends

2023-09-02 Thread Charles Plessy
Hello, s3fs-fuse is one of the last packages holding the mime-support transition; I intend to NMU it soon with to close this bug. Have a nice day, Charles Le Sun, Apr 17, 2022 at 02:32:04PM +0900, Charles Plessy a écrit : > Source: s3fs-fuse > Severity: normal > X-Debbugs-Cc: ple...@d

Bug#1009768: s3fs-fuse: Please replace mime-support with media-types in Depends

2023-08-25 Thread Charles Plessy
Le Sun, Apr 17, 2022 at 02:32:04PM +0900, Charles Plessy a écrit : > > In the previous release cycle, I have split the `mime-support` package > into two: `media-types` supplies /etc/mime.types and `mailcap` supplies > the mailcap system. `mime-support` is now a transitional pack

Bug#980347: Please Recommend mailcap instead of mime-support

2023-08-25 Thread Charles Plessy
Le Mon, Jan 18, 2021 at 07:54:19AM +0900, Charles Plessy a écrit : > > I have recently split the `mime-support` package into two: `mailcap` for > the mailcap system, and `media-types` for providing `/etc/mime.types` > to allow minimal systems without `mailcap`. > > The `mailca

Bug#1009771: netsurf: Please replace mime-support with media-types or mailcap in Recommends

2023-08-25 Thread Charles Plessy
Le Sun, Apr 17, 2022 at 02:48:31PM +0900, Charles Plessy a écrit : > > In the previous release cycle, I have split the `mime-support` package > into two: `media-types` supplies /etc/mime.types and `mailcap` supplies > the mailcap system. `mime-support` is now a transitional pa

Bug#1049459: RM: mime-support -- ROM; Transition over

2023-08-24 Thread Charles Plessy
Dear Scott, I just saw your "moreinfo" tag. I forgot to mention in the bug that I have a wiki page tracking final stage of the transition: https://wiki.debian.org/mime-support Please let me know if you need more information or if you would prefer me to NMU the unresponsive packages before you

Bug#1050481: Please depend on media-types or mailcap instead of mime-support

2023-08-24 Thread Charles Plessy
Package: pygopherd Severity: normal X-Debbugs-Cc: ple...@debian.org Dear John, the mime-support package on which pygopherd depends is a transition package that was superseded by media-types, providing /etc/mime.types, and mailcap, providing the mailcap system. I need you to update the

[med-svn] [Git][med-team/last-align] Pushed new tag upstream/1471

2023-08-23 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag upstream/1471 at Debian Med / last-align -- View it on GitLab: https://salsa.debian.org/med-team/last-align/-/tree/upstream/1471 You're receiving this email because of your account on salsa.debian.org. ___ debian-med

[med-svn] [Git][med-team/last-align] Pushed new tag debian/1471-1

2023-08-23 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag debian/1471-1 at Debian Med / last-align -- View it on GitLab: https://salsa.debian.org/med-team/last-align/-/tree/debian/1471-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med

[med-svn] [Git][med-team/last-align][pristine-tar] pristine-tar data for last-align_1471.orig.tar.xz

2023-08-23 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch pristine-tar at Debian Med / last-align Commits: 806cff34 by Charles Plessy at 2023-08-24T01:51:58+00:00 pristine-tar data for last-align_1471.orig.tar.xz - - - - - 2 changed files: - + last-align_1471.orig.tar.xz.delta - + last-align_1471.orig.tar.xz.id

Debian is not X (was Re: Questionable Package Present in Debian: fortune-mod)

2023-08-19 Thread Charles Plessy
Le Fri, Aug 18, 2023 at 07:46:51PM -0500, G. Branden Robinson a écrit : > > "Debian is not X, it's an operating system" is an old trope Well, X is only one month old, and Debian is 30 years old, so the comparison is not fair. This said, X contains many more fortunes than Debian, and for many

Bug#1041556: [R-pkg-team] Bug#1041556: What is the architecture name in R what we call armel/armhf

2023-08-17 Thread Charles Plessy
Le Thu, Aug 17, 2023 at 07:52:35AM +0200, Andreas Tille a écrit : > > arch <- R.version$arch > identical(arch, "i386") || identical(arch, "i686") || identical(arch, > "armel") || identical(arch, "armhf") Hi Andreas, how about: system("dpkg-architecture -qDEB_BUILD_ARCH", intern=TRUE)

Bug#1041556: [R-pkg-team] Bug#1041556: What is the architecture name in R what we call armel/armhf

2023-08-17 Thread Charles Plessy
Le Thu, Aug 17, 2023 at 07:52:35AM +0200, Andreas Tille a écrit : > > arch <- R.version$arch > identical(arch, "i386") || identical(arch, "i686") || identical(arch, > "armel") || identical(arch, "armhf") Hi Andreas, how about: system("dpkg-architecture -qDEB_BUILD_ARCH", intern=TRUE)

Bug#1049459: RM: mime-support -- ROM; Transition over

2023-08-15 Thread Charles Plessy
Package: ftp.debian.org Severity: normal User: ftp.debian@packages.debian.org Usertags: remove X-Debbugs-Cc: mime-supp...@packages.debian.org Control: affects -1 + src:mime-support Dear FTP team, please remove mime-support (binary and source) from trixie. The transition from mime-support to

Re: RIP VIM

2023-08-09 Thread Charles Plessy
Le Mon, Aug 07, 2023 at 11:22:23AM +0200, ajh-valmer a écrit : > > Sans le mode graphique, combien de fois VIM m'a sauvé, > que j'ai remplacé par NANO car VIM à partir d'une nouvelle version > a du mal avec les copier/coller. C'est un changement de configuration par défaut d'il y a quelques

Re: Gérer l'état d'un serveur avec update-alternatives

2023-08-09 Thread Charles Plessy
Le Wed, Aug 09, 2023 at 08:34:46AM +0200, Olivier a écrit : > > J'ai souvent besoin de coordonner la bascule simultanée de plusieurs > liens symboliques quand je bascule un serveur d'un état "En > préparation" à son état "En production" (ou réciproquement). Si ce sont les seuls fichiers qui

Re: Can we distribute pre-built locales to speed up image generation?

2023-08-01 Thread Charles Plessy
Le Tue, Aug 01, 2023 at 03:18:18PM +0530, Nilesh Patra a écrit : > > https://micronews.debian.org/2023/1686751737.html Thanks ! I was using sid but just switched to fasttrack thanks to your message. Cheers, -- Charles

Re: Can we distribute pre-built locales to speed up image generation?

2023-08-01 Thread Charles Plessy
Le Tue, Aug 01, 2023 at 11:56:28AM +0200, PICCA Frederic-Emmanuel a écrit : > > I sthere a maliling list where we can speak about these singuarity/apptainer > applications ? I wouln't mind debian-hpc@l.d.o, but I do not know about the opinion of the other subscribers? Cheers, --

[solved] Re: Can we distribute pre-built locales to speed up image generation?

2023-08-01 Thread Charles Plessy
t; locales-all has Installed-Size: 227M, I don't know why that differs so > much from your estimate. I was reporting the size of the Singularity image, which must be compressed in some way. A minimal image containing the hello package and locales-all is ~90M. Cheers, Charle

Can we distribute pre-built locales to speed up image generation?

2023-08-01 Thread Charles Plessy
to provide pre-built locales again, either in a separate package or in one of the system images that we distribute, in the interest of embracing language diversity. It has been a long time I have not posted here, and I am not subscribed at the moment. Please CC me! Have a nice day, Charles -- Charles

[Blends-commit] [Git][blends-team/med][master] Remove legacy r-bioc-deseq package

2023-08-01 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch master at Debian Blends Team / med Commits: 36570d31 by Charles Plessy at 2023-08-01T06:22:16+00:00 Remove legacy r-bioc-deseq package - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev

Bug#1042776: [R-pkg-team] Bug#1042776: Bug#1042776: r-bioc-deseq: still depends on obsolete r-api-bioc-3.16

2023-07-31 Thread Charles Plessy
Le Tue, Aug 01, 2023 at 09:29:59AM +0900, Charles Plessy a écrit : > > the DESeq Bioconductor package was removed from the 3.17 release > upstream. I think that we can remove it from unstable and testing too. > > I will fill a removal later today. Actually it was removed

Bug#1042776: [R-pkg-team] Bug#1042776: Bug#1042776: r-bioc-deseq: still depends on obsolete r-api-bioc-3.16

2023-07-31 Thread Charles Plessy
Le Tue, Aug 01, 2023 at 09:29:59AM +0900, Charles Plessy a écrit : > > the DESeq Bioconductor package was removed from the 3.17 release > upstream. I think that we can remove it from unstable and testing too. > > I will fill a removal later today. Actually it was removed

Bug#1042776: marked as pending in r-bioc-deseq

2023-07-31 Thread Charles Plessy
/bad370412269ea6b7543b3f76d238f1765e3affd r-bioc-deseq (1.39.0-12) unstable; urgency=medium * Team upload. * Update patch to rebuild for BioC API 3.17 (Closes: #1042776) -- Charles Plessy Tue, 01 Aug 2023 11:41:09 +0900

Bug#1042776: [R-pkg-team] Bug#1042776: r-bioc-deseq: still depends on obsolete r-api-bioc-3.16

2023-07-31 Thread Charles Plessy
7 release upstream. I think that we can remove it from unstable and testing too. I will fill a removal later today. Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Too

Bug#1042776: [R-pkg-team] Bug#1042776: r-bioc-deseq: still depends on obsolete r-api-bioc-3.16

2023-07-31 Thread Charles Plessy
7 release upstream. I think that we can remove it from unstable and testing too. I will fill a removal later today. Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Too

Re: Re: Moving debootstrap to fully team maintained (drop Uploaders field)

2023-07-18 Thread Charles Plessy
cing them would be a service to the team, not a claim of ownership! Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from home https://framapiaf.org/

[med-svn] [Git][med-team/last-align] Pushed new tag upstream/1460

2023-07-13 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag upstream/1460 at Debian Med / last-align -- View it on GitLab: https://salsa.debian.org/med-team/last-align/-/tree/upstream/1460 You're receiving this email because of your account on salsa.debian.org. ___ debian-med

[med-svn] [Git][med-team/last-align] Pushed new tag debian/1460-1

2023-07-13 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag debian/1460-1 at Debian Med / last-align -- View it on GitLab: https://salsa.debian.org/med-team/last-align/-/tree/debian/1460-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med

[med-svn] [Git][med-team/last-align][pristine-tar] pristine-tar data for last-align_1460.orig.tar.xz

2023-07-13 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch pristine-tar at Debian Med / last-align Commits: 79e1ab8b by Charles Plessy at 2023-07-14T09:36:22+09:00 pristine-tar data for last-align_1460.orig.tar.xz - - - - - 2 changed files: - + last-align_1460.orig.tar.xz.delta - + last-align_1460.orig.tar.xz.id

Bug#1039926: Will file bug report for complete R transition (Was: Bug#1039926: svglite requires rebuild under R 4.3.*)

2023-06-30 Thread Charles Plessy
! Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from home https://framapiaf.org/@charles_plessy - You do not have my permission to use this email to train

Bug#1028631: media-types: rss is associated with application/x-rss+xml instead of application/rss+xml

2023-06-16 Thread Charles Plessy
05250 10 years later, that surely does not look like it was the best choice… But please give a try to the IANA registration. It is way easier than 10 years ago. Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http:/

Re: Clé USB bootable à partir d'un iso

2023-05-18 Thread Charles Plessy
c. https://www.debian.org/releases/bookworm/amd64/ch04s03.fr.html#usb-copy-isohybrid Je ne sais pas si ça s'applique à toutes les isos en général. Librement, -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Too

Bug#1028631: media-types: rss is associated with application/x-rss+xml instead of application/rss+xml

2023-05-18 Thread Charles Plessy
Hi Patrice, maybe you or someone else can register the media type to the IANA based on the expired IETF draft and see if it goes? In any case, we have time as Debian is currently frozen... Have a nice day, -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med

Re: Re : Re: Bookworm ou pas ?

2023-05-12 Thread Charles Plessy
n-security/ bookworm-security main contrib Attention à ne pas oublier la nouvelle section non-free-firmware qui contient entre autre des mises à jour des microcodes des processeurs Intel et AMD. https://www.debian.org/releases/bookworm/amd64/release-notes/ch-information.fr.html#non

Re: Nextflow - have just used it on our HPC cluster and liked it

2023-05-08 Thread Charles Plessy
nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from home https://framapiaf.org/@charles_plessy - You do not have my permission to use this email to train an AI -

Re: Comment éviter la saisie de longs chemins avec /bin/bash ?

2023-03-02 Thread Charles Plessy
satisfait, sauf que la complétion avec tab n'explore pas les sous-répertoires... Amicalement, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from home https://framap

Re: Brief update about software freedom and artificial intelligence

2023-02-23 Thread Charles Plessy
dataset and the result of the training process to be open source if a work under that license is present in the training data? Would GPLv3 be sufficient? Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http

Bug#1028631: media-types: rss is associated with application/x-rss+xml instead of application/rss+xml

2023-01-13 Thread Charles Plessy
Dear Giuseppe, thank you for your report, registration to IANA is not difficult, can you find somebody who is willing to do it ? https://www.iana.org/form/media-types Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging

Bug#978984: media-types: /etc/mime.types reported as oldconfig

2022-12-25 Thread Charles Plessy
Le Sun, Dec 25, 2022 at 10:58:12AM +0200, Martin-Éric Racine a écrit : > > Where? What was the explanation? https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=886389#45 -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team

[med-svn] [Git][med-team/seaview][master] Patch for command-line arguments of MUSCLE 5.

2022-12-14 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch master at Debian Med / seaview Commits: 15722bf4 by Charles Plessy at 2022-12-15T15:14:40+09:00 Patch for command-line arguments of MUSCLE 5. - - - - - 4 changed files: - align.cxx - debian/changelog - + debian/patches/muscle5 - + debian/patches/series

[med-svn] [Git][med-team/seaview] Pushed new tag debian/1%5.0.5-2

2022-12-14 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag debian/1%5.0.5-2 at Debian Med / seaview -- View it on GitLab: https://salsa.debian.org/med-team/seaview/-/tree/debian/1%255.0.5-2 You're receiving this email because of your account on salsa.debian.org. ___ debian

Re: Fortunes-off - do we need this as a package for Bookworm?

2022-12-14 Thread Charles Plessy
f opinion texts that I think are important and upload it to NEW because I believe it is cheap for Debian to distributes it, I bet the answer will be something "please distribute it yourself until it demonstrates relevance beyond your own circles". Have a nice day, Charles

Bug#1009118: [Debian-med-packaging] Bug#1009118: python3-biopython: incompatible with muscle >= 5

2022-11-23 Thread Charles Plessy
Hello everybody, I have read the Muscle5 paper and it is a totally different program than Muscle3. https://pubmed.ncbi.nlm.nih.gov/36379955/ Reintroducing muscle3 as a separate package might be useful not only to Biopython, but also to the people who need it in pipelines, etc. Have a nice

Re: [Debian-med-packaging] Bug#1009118: python3-biopython: incompatible with muscle >= 5

2022-11-23 Thread Charles Plessy
Hello everybody, I have read the Muscle5 paper and it is a totally different program than Muscle3. https://pubmed.ncbi.nlm.nih.gov/36379955/ Reintroducing muscle3 as a separate package might be useful not only to Biopython, but also to the people who need it in pipelines, etc. Have a nice

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