[Freesurfer] What’s your dream scanner, coil, peripherals combo?

2023-01-19 Thread Craggs, Jason G.
External Email - Use Caution Greetings, A Dean of Research is seeking input for a new research dedicated neuroimaging suite and asked me about about potential items. While I’m familiar with the setups I’ve used, I’m wondering what others would recommend if they could start

[Freesurfer] Adjusting statistical thresholds

2021-04-30 Thread Craggs, Jason G.
External Email - Use Caution Greetings, My lab is just starting to incorporate - Jason G Craggs, Ph.D. Assistant Professor SHP/Physical Therapy University of Missouri 801 Clark Hall Columbia, MO 65211-4250 Phone: 573-884-9345

Re: [Skim-app-users] GoodReader callout bug

2020-09-01 Thread Craggs, Jason G.
Tom, I use GoodReader a lot as well. FYI: The latest version can email a PDF with flattened annotations embedded that can be seen in Skim. Is this what you wanted? Cheers, Jason On Sep 1, 2020, at 10:55 AM, Schneider, Thomas (NIH/NCI) [E] via Skim-app-users

[Bibdesk-users] Update references

2020-07-14 Thread Craggs, Jason G.
Greetings, My library has more than several pre-prints and incomplete citations (e.g., missing PMID etc.). How can I compare a local record against one from a PubMed search and then update the local version? Cheers, Jason Sent from my phone; please pardon any communication catastrophes.

Re: [Bibdesk-users] Thumbnail after adding PDF and autofiling

2020-07-13 Thread Craggs, Jason G.
Luc, That sounds like a great script. The first thing that came to mind: could you add a timer of some sort and then refresh/reload? Any chance of sharing? Cheers, Jason Sent from my phone; please pardon any communication catastrophes. On Jul 13, 2020, at 7:27 AM, Luc Bourhis via

Re: [Skim-app-users] Interview on Skim with Christiaan Hofman

2020-06-18 Thread Craggs, Jason G.
Agreed. Thanks for sharing. Cheers, Jason - Jason G Craggs, Ph.D. Assistant Professor SHP/Physical Therapy University of Missouri 801 Clark Hall Columbia, MO 65211-4250 Phone: 573-884-9345 http://tinyurl.com/MU-PT-Jason-Craggs

Re: [Bibdesk-users] automatic bibtex (was Re: [Skim-app-users] Updating references)

2020-02-24 Thread Craggs, Jason G.
Tom, Thank you. I did indeed post this to the wrong group. I intended to post the question to the BibDesk forum and hadn’t considered, nor know about, texhax. I will check that group later today. Thanks also for the links. They might just do the trick. Cheers, Jason

Re: [Skim-app-users] All old Skim annotations disappeared after SW update

2020-02-21 Thread Craggs, Jason G.
Thanks for the quick response. Is recommended? Currently I save the external .skim files. Jason > On Feb 21, 2020, at 11:31 AM, Christiaan Hofman wrote: > > The PDFD format wraps the PDF and the notes into a bundle, like the RTFD > format does for text and embeded images. It is a format

Re: [Skim-app-users] Updating references

2020-02-21 Thread Craggs, Jason G.
Oops, yes. Sorry. I will repost. On Feb 21, 2020, at 11:33 AM, Christiaan Hofman mailto:cmhof...@gmail.com>> wrote: Did you mean to ask this for BibDesk? Christiaan Op vr 21 feb. 2020 18:03 schreef Craggs, Jason G. mailto:crag...@health.missouri.edu>: Greetings everyone,

Re: [Skim-app-users] All old Skim annotations disappeared after SW update

2020-02-21 Thread Craggs, Jason G.
Greetings, This thread raised a couple of questions for me. What is the pdfd format? After downloading a pdf article, how does one change to this format? Cheers, Jason > On Feb 21, 2020, at 2:49 AM, Heli Helanummi-COle wrote: > > Dear Alan, Christiaan, Tom and Carsten, > Thank you very

[Skim-app-users] Updating references

2020-02-21 Thread Craggs, Jason G.
Greetings everyone, For a lot of the manuscript and grant applications I have to include the pmid and PMC numbers that pubmed provides. I’ve added the Pmc filed as a default for all references. This works just fine for new references, but is blank in my previous references. I really don’t

[Bibdesk-users] Batch additions to a custom field

2019-12-04 Thread Craggs, Jason G.
Greetings, I’m trying to add journal impact factor scores to my bib file. How can I add the score to all instances of a journal at once? Cheers, Jason ___ Bibdesk-users mailing list Bibdesk-users@lists.sourceforge.net

Re: [Skim-app-users] SkimNotes 1.4

2019-10-09 Thread Craggs, Jason G.
Christiaan, Wonderful news. Thank you. Cheers, Jason Sent from my iPad; please pardon any communication catastrophes. On Oct 9, 2019, at 4:30 AM, Christiaan Hofman mailto:cmhof...@gmail.com>> wrote: For those interested in the SkimNotes framework or tools, I'd like to say that there is a

[Skim-app-users] Convert Notes Skim 1.5.2 (118)

2019-06-26 Thread Craggs, Jason G.
Greetings, I’m trying to learn more about Skim functionality. What does the the following option supposed to do? Nothing seems to happen. File > Convert Notes Cheers, Jason ___ Skim-app-users mailing list Skim-app-users@lists.sourceforge.net

[Bibdesk-users] Text selection in lower panel of pdf split view

2019-06-26 Thread Craggs, Jason G.
Greetings, When using split view to read a pdf, having the ability to highlight or make any other notes in the lower pane would be a great function. Is this a possibility or out of the question? Cheers, Jason ___ Bibdesk-users mailing list

Re: [Bibdesk-users] Blank library window and search issues

2019-02-26 Thread Craggs, Jason G.
Welp, I’m embarrassed. Cheers, Jason Sent from my phone; please pardon any communication catastrophes. On Feb 26, 2019, at 4:55 PM, Christiaan Hofman mailto:cmhof...@gmail.com>> wrote: On 26 Feb 2019, at 20:10, Craggs, Jason G. mailto:crag...@health.missouri.edu>> wrote: Greet

[Freesurfer] How to convert enhanced dicom format

2018-10-05 Thread Craggs, Jason G.
External Email - Use Caution Greeting, Our radiology department recently installed a Siemens Vida system. It apparently exports in "enhanced dicom” format, which doesn't work with any of my software. Does anyone know anything about this format? Cheers, Jason

Re: [Bibdesk-users] Adding field for bibliography output

2018-09-13 Thread Craggs, Jason G.
, or bibtex creates. Apparently I have to edit a .bbx or .cbx style file, but I don’t know which one or where they are located. Jason > On Sep 13, 2018, at 3:46 PM, Simon Spiegel wrote: > > Hi Jason > >> On 13 Sep 2018, at 21:52, Craggs, Jason G. >> wrote: &g

Re: [Bibdesk-users] Adding field for bibliography output

2018-09-13 Thread Craggs, Jason G.
Hi Simon, I usually typeset everything via TeXShop. Where can I find information on how to use, and customize biblatex? Cheers, Jason > On Sep 13, 2018, at 12:59 AM, Simon Spiegel wrote: > > > >> On 12 Sep 2018, at 22:42, Christiaan Hofman wrote: >> >> I don't really know, I learned

Re: [Bibdesk-users] Adding field for bibliography output

2018-09-13 Thread Craggs, Jason G.
..@gmail.com>> wrote: I don't really know, I learned it by looking at some standard styles in the tex distribution. Christiaan Op wo 12 sep. 2018 22:18 schreef Craggs, Jason G. mailto:crag...@health.missouri.edu>>: Christiaan, Thanks for quick response. Do you know where I can learn

Re: [Bibdesk-users] Adding field for bibliography output

2018-09-13 Thread Craggs, Jason G.
ngeles On Wed, Sep 12, 2018 at 1:42 PM, Christiaan Hofman mailto:cmhof...@gmail.com>> wrote: I don't really know, I learned it by looking at some standard styles in the tex distribution. Christiaan Op wo 12 sep. 2018 22:18 schreef Craggs, Jason G. mailto:crag...@health.missouri.edu&g

Re: [Bibdesk-users] Adding field for bibliography output

2018-09-12 Thread Craggs, Jason G.
Christiaan, Thanks for quick response. Do you know where I can learn about this, or is google a better option? :-) Cheers, Jason > On Sep 12, 2018, at 3:00 PM, Christiaan Hofman wrote: > > You need to copy and edit a bibtex style. > > Christiaan >

[Bibdesk-users] Adding field for bibliography output

2018-09-12 Thread Craggs, Jason G.
Greetings, I have to put together a CV that includes impact factor scores with my publications. I can add this information to each BibDesk entry, but am not sure how to have it included in the actual output. Does anyone have any suggestions how this can be accomplished? Cheers, Jason

Re: [Bibdesk-users] Reading pdfs from Bibdesk on iPad

2018-09-01 Thread Craggs, Jason G.
Depending on your needs, I’ve liked using Texpad. I'd like to know what others use and like. Cheers, Jason From: Morten Risager Sent: Saturday, September 1, 2018 7:47:06 AM To: bibdesk-users@lists.sourceforge.net Subject: [Bibdesk-users] Reading pdfs from

[Bibdesk-users] Awesome new release

2018-07-27 Thread Craggs, Jason G.
Greetings, I just wanted to say thanks for adding an indicator as to whether a linked file has skim notes! Personally, this will be extremely helpful! You all do tremendous work and I really appreciate the time and effort put into these projects! Cheers, Jason

Re: [Bibdesk-users] Question about script groups

2018-07-23 Thread Craggs, Jason G.
Thanks for the great info. I really appreciate your time and effort. Cheers, Jason Sent from my phone; please pardon any communication catastrophes. On Jul 23, 2018, at 2:36 PM, Adam R. Maxwell via Bibdesk-users wrote: > On Jul 23, 2018, at 12:19 PM, "Craggs, Jason G.&qu

Re: [Bibdesk-users] Question about script groups

2018-07-23 Thread Craggs, Jason G.
, 2018, at 11:10 AM, "Craggs, Jason G." mailto:crag...@health.missouri.edu>> wrote: @ Christian, thanks for the information about the cite key. Just so I know, If it’s not a field, how then is it stored? It's stored as a separate attribute of an item, unlike the normal "foo = ba

Re: [Bibdesk-users] Question about script groups

2018-07-23 Thread Craggs, Jason G.
final bibliography. However there was a period when I was trying to consolidate the two and that means there are duplicate entries which is throwing errors from the latex compiler. On Jul 23, 2018, at 1:12 PM, Craggs, Jason G. mailto:crag...@health.missouri.edu>> wrote: Jan, Sorry for asking

Re: [Bibdesk-users] Question about script groups

2018-07-23 Thread Craggs, Jason G.
Jan, Sorry for asking the obvious, but why do you need to separate/remove the other entries? Cheers, Jason Sent from my phone; please pardon any communication catastrophes. On Jul 22, 2018, at 3:03 PM, Adam R. Maxwell via Bibdesk-users mailto:bibdesk-users@lists.sourceforge.net>> wrote:

Re: [Bibdesk-users] Question about script groups

2018-07-23 Thread Craggs, Jason G.
@ Jan, there are a bunch of free text editors available that will allow you to do a find and replace using regular expressions. Given that you can open up your .bib file with any text editor this may be helpful for your particular situation. @ Christian, thanks for the information about the

Re: [Bibdesk-users] Question about script groups

2018-07-23 Thread Craggs, Jason G.
Stephan, That’s great information, and feature I didn’t know about! Cheers, Jason Sent from my phone; please pardon any communication catastrophes. On Jul 22, 2018, at 4:04 PM, Stephan Kurz wrote: Trying to think of possible reasons on what you want/need to achieve, I'm chiming in with

Re: [Bibdesk-users] TeXShop Insert citation

2018-07-10 Thread Craggs, Jason G.
4.html Use F5 or opt-esc to activate it, unless you have a different keybinding set up for the complete: selector. https://www.google.com/search?q=bibdesk+texshop+autocomplete=bibdesk+texshop+autocomplete=chrome..69i57.5679j0j7=chrome=UTF-8 From: Craggs, Jason G. [mailto:crag...@health.missou

Re: [Bibdesk-users] TeXShop Insert citation

2018-07-10 Thread Craggs, Jason G.
ibdesk+texshop+autocomplete=chrome..69i57.5679j0j7=chrome=UTF-8 From: Craggs, Jason G. [mailto:crag...@health.missouri.edu] Sent: Tuesday, July 10, 2018 2:10 PM To: BibDesk Users mailto:bibdesk-users@lists.sourceforge.net>> Subject: [Bibdesk-users] TeXShop Insert citation The other day I stu

[Bibdesk-users] TeXShop Insert citation

2018-07-10 Thread Craggs, Jason G.
The other day I stumbled across a keyboard shortcut to auto-complete a BibDesk citation while in TeXShop. However, I can't find any documentation on this. Does anyone have a clue? Cheers, Jason -- Check out the vibrant

Re: [Bibdesk-users] Syncing across machines

2018-07-10 Thread Craggs, Jason G.
Ok Thanks. Theoretically, I could do this with an rsync command right? Jason On Jul 10, 2018, at 3:56 PM, Christiaan Hofman mailto:cmhof...@gmail.com>> wrote: On 10 Jul 2018, at 22:00, Craggs, Jason G. mailto:crag...@health.missouri.edu>> wrote: Slight correction to prev

Re: [Bibdesk-users] Syncing across machines

2018-07-10 Thread Craggs, Jason G.
Slight correction to previous example. The colors eventually showed up, but the columns are definitely not the same. Jason --- Greetings, I access my bib file with different machines. Which files do I have to sync so that BibDesk is the same at work and home? For

[Bibdesk-users] Syncing across machines

2018-07-10 Thread Craggs, Jason G.
Greetings, I access my bib file with different machines. Which files do I have to sync so that BibDesk is the same at work and home? For example, the columns are different and no colors show up on my work machine. Cheers, Jason

Re: [Bibdesk-users] [BEWARE-SUSPECTED SPAM]Re: Labels and ratings and notes - oh my

2018-07-09 Thread Craggs, Jason G.
M]Re: [Bibdesk-users] Labels and ratings and notes - oh my Sorry, that should be "Local File". It should be in the list of the combo box when you add a new column. Christiaan Op ma 9 jul. 2018 18:43 schreef Craggs, Jason G. mailto:crag...@health.missouri.edu>>: Ok, well I down

[Skim-app-users] Downloads window

2018-07-09 Thread Craggs, Jason G.
Greetings, I’ve noticed that Skim has a Downloads window. However, I can't find any information about its purpose or use. Where can I find this information? Cheers, Jason -- Check out the vibrant tech community on

Re: [Bibdesk-users] Labels and ratings and notes - oh my

2018-07-09 Thread Craggs, Jason G.
Ok, well I downloaded the most recent nightly and I haven't found a "Local Files" column. The closest I found was "Local url" and I don't think that is what you mean. Where have I gone wrong and where can I get the right information? Thanks again for any and all help. Cheers, Jason

Re: [Bibdesk-users] Labels and ratings and notes - oh my

2018-07-09 Thread Craggs, Jason G.
Thanks Christiaan, 1) Having the ability to sort by color is a really nice feature. Kudos. One question, how do I remove a color - just make it white? 2) I completely missed the column headings in contextual menu of the main table. Sorry. 3) Regarding Skim notes: FWIW, I was thinking of a

Re: [Skim-app-users] join notes across a page

2018-07-09 Thread Craggs, Jason G.
be counter intuitive and therefore wrong. Christiaan Op ma 9 jul. 2018 02:25 schreef Craggs, Jason G. mailto:crag...@health.missouri.edu>>: Greetings, I’ve found the link below from the archives. However, I was wondering, giving the hierarchy issue, if when trying to join notes on different

[Bibdesk-users] Labels and ratings and notes - oh my

2018-07-08 Thread Craggs, Jason G.
Greetings, I’ve recently begun the migration from Papers to BibDesk & Skim and have a few questions. 1) I can add the column "Color Label" but have no idea what information it should contain or how to use the column appropriately. Where can I find this information? 2) Although I can rate

[Skim-app-users] join notes across a page

2018-07-08 Thread Craggs, Jason G.
Greetings, I’ve found the link below from the archives. However, I was wondering, giving the hierarchy issue, if when trying to join notes on different pages, just the text from the second note could be appended to the first note. To me, a non-programmer, this would essentially combine the