Re: [base] porting base

ore... I've moved BASE installations around a bit between different machines. Also, the demo data set that we handed out at MGED 6/7 was a MySQL data directory and the BASE data directory. //Carl -- Carl Troein - [EMAIL PROTECTED] http://www.thep.lu.se/~carl/ BASE develo

[base] Re: Lowess normalization

. Or use our funky BASEfile format, but if you're not using BASE that just seems wrong. Or you could start using BASE, but doing so just for a normalizer is a bit like contracting a Vogon contructor fleet to have them dig a small hole in your back yard - it works, but you'll get more

Re: [base] BASE 1.2.17b compilation error

or 4.x. But it's an easy thing to fix, so I'll do it right away. Osvid, I'll send you the updated jobRunner.c off the mailing list (not that it's very big, but still). //Carl -- Carl Troein - [EMAIL PROTECTED] http://www.thep.lu.se/~carl/ BASE developer - http://base.

Re: [base] compile BASE on x86_64

treat C and C++ differently. But to give it a try, you could comment out the line in configure.ac that says AC_CHECK_LIB(m,main,[MATH_LIB="-lm" LIBS="-lm $LIBS"]) or remove the corresponding lines in configure (everything from one "# must add" to the next

Re: [base] error header

mat identifier" and "data header" lines are, down where the the beginning of the file is displayed. //Carl -- Carl Troein - [EMAIL PROTECTED] http://www.thep.lu.se/~carl/ BASE developer - http://base.thep.lu.se/ --- This S

Re: [base] analyze data - filter question

7;s not much there since the HD crash 5 months ago. If you bug him at johan.enell (at) med.lu.se, he might make something available. //Carl -- Carl Troein - [EMAIL PROTECTED] http://www.thep.lu.se/~carl/ --- This SF.net email is sponsored by: Splu

[base] Regarding rejected mails

few real mails through, so now I'm just doing to send every mail that's being held for approval straight into oblivion. I hope this won't cause any problems. //Carl -- Carl Troein - [EMAIL PROTECTED] http://www.thep.lu.se/~carl/ ---

Re: [base] BASE with Mysql CLuster

sted, though, and I can't imagine how big a BASE installation must be for it to be needed. //Carl -- Carl Troein - [EMAIL PROTECTED] http://www.thep.lu.se/~carl/ --- This SF.net email is sponsored by: Splunk Inc. Do you grep through lo

Re: [base] base index.phtml

ther different problem. But if you look in the apache error log (which can be in various places depending on how apache was installed), there should be some hint. //Carl -- Carl Troein - [EMAIL PROTECTED] http://www.thep.lu.se/~carl/ ---

Re: [base] permanently remove reporters?

s possible to run the bin/purgeDatabase.php script, which'll permanently delete all unused reporters plus everything that has been flagged as removed (and that is not referenced anymore). //Carl -- Carl Troein - [EMAIL PROTECTED] http://www.thep.lu.se/~carl/ -

Re: [base] Help needed on jobRunner

shouldn't touch), you're probably better off without the --with-jobrunner-* flags, since it complicates the installation a bit to use them. //Carl -- Carl Troein - [EMAIL PROTECTED] http://www.thep.lu.se/~carl/ --- This SF.net email is sp

Re: [base] Help needed on jobRunner

it to the admin and user to handle this manually. It would probably make sense to not have any limits by default, though, even if that means that an ill- behaved plugin could possibly crash the BASE server (which is a testament to how badly Linux still handles out-of-memory situations, and how m

Re: [base] Fix for tifftopnm.c for Fedora Core 3

and changed TRUE and FALSE to 1 and 0 in the file now. Not only does this save several bytes, but it also make the source somewhat more obfuscated. Which I like. ;-D //Carl -- Carl Troein - [EMAIL PROTECTED] http://www.thep.lu.se/~carl/ ---

Re: [base] Installation problem - base-1.2.17b.tar.gz

ion of jobRunner.c that should compile on your system. //Carl -- Carl Troein - [EMAIL PROTECTED] http://www.thep.lu.se/~carl/ // $Id: jobRunner.c,v 1.7 2005/12/09 18:25:17 troein Exp $ // // BioArray Software Environment (BASE) - homepage http://base.thep.lu.se/ // Copyright (C) 2003-2005 Carl Troe

Re: [base] Uploade file size limit and custom column how-to

individual subscribers? If it's not from lists.sourceforge.net it could be that some subscribers aren't there anymore and that their mail servers are broken enough that they try to tell you about it (rather than obey the Errors-To: header that would have such error messages sent to me).

[base] MAGE-ML compilation error

code's been there since April, so I'm thinking the error must be on my end. Should I upgrade Java to 1.5, or is it something else? //Carl -- Carl Troein - [EMAIL PROTECTED] http://www.thep.lu.se/~carl/ - Using

Re: [base] Problem on converting plug-ins on BASE 1.2.10 to 1.2.17

is that even though this "section" header is required, the web part of BASE doesn't check if it's present. The plugin editing page should of course show a big red warning text if there's no "section", and it should probably even be created by default... Sorry for

Re: [base] BASE 1 : flock question

ocess that was supposed to print A. I hope the one-liner doesn't fall apart in transmission, but if it does just put it back together again. php -r '$f=fopen("test.lock","w");flock($f,LOCK_EX);sleep(3);echo "A\n";' & php -r 'sleep(1);$f=fop