Please also note there are two MAC builders currently listed in the daily build
reports for Bioc devel 3.9.
Please ignore merida2.
Merida2 is a legacy build machine that will be taken offline shortly. Please
satisfy all install/build/check for the active build machines
Active build machines:
merida2 is a legacy build machine that will be taken offline shortly. Please
satisfy celaya2.
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
Dear Bioconductor,
With your very helpful assistance, for which we are extremely grateful,
we have succeeded in removing the errors from the devel branch of our
bumphunter package. More or less, anyway.
We are passing on celaya2 and failing on merida2. The reason is that
celaya2 is running
Thanks Lori :)
I've already written to my reviewer (Qian Liu) asking if it's possible to
proceed with the review in the current situation.
The code in the package is quite fast (and simple) but I'll take a look at that
link to see if I can get a few more seconds out.
Bernat
El 4/5/19
Also, the reviewer might be able to glance at the code and help try to make it
run more efficiently. See points on
http://bioconductor.org/developers/how-to/efficient-code/ for things like
vectorization and pre-allocation.
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer
If the check time is passing on the other platforms, and the windows check
isn't incredibly over the time limit, you should be okay. Talk with your
reviewer but in general we would make an exception for this warning.
Most of the time subsets of data can be used for examples and vignettes
Hi all,
I've submitted a new package (CopyNumberPlots, issue 1076) and I have a
problem. It keeps giving me a warning because on windows it takes more
than 5 minutes to check (in Lunix it works with no problems). I've
reduced the examples, removed part of the vignette... and in my machine
The final day to submit new packages to the Bioconductor contributions tracker
to have a shot at being included in the upcoming 3.9 release is TODAY!
Please note: submission by this date does not guarantee it will be included -
the package must undergo an official review and be accepted by
