Re: [ccp4bb] High Rfree: Phasing issue or partial crystal disorder

2017-04-21 Thread Andreas Förster
Dear Pravin, this brings me to re-emphasize a point I've just made at RapiData. If you're working with PILATUS or EIGER detectors, there is no good reason not to spread your dose over at least 360° of data. You will get better statistics than if you collect 57.2° or whatever your strategy

Re: [ccp4bb] High Rfree: Phasing issue or partial crystal disorder

2017-04-19 Thread James Holton
In situations like this I always try dropping to P1. Even if the data are highly incomplete in P1 you can still refine it. Difference maps are degraded by poor completeness, but you still might see something. But either way, the R-factors will tell you something. if dropping to P1 solves

Re: [ccp4bb] High Rfree: Phasing issue or partial crystal disorder

2017-04-12 Thread Eleanor Dodson
> *From:* CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of > Pravinkumar Jagtap [pravinja...@gmail.com] > *Sent:* Tuesday, April 11, 2017 1:54 PM > *To:* CCP4BB@JISCMAIL.AC.UK > *Subject:* [ccp4bb] High Rfree: Phasing issue or partial crystal disorder > > Dear All,

Re: [ccp4bb] High Rfree: Phasing issue or partial crystal disorder

2017-04-12 Thread Phoebe A. Rice
To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] High Rfree: Phasing issue or partial crystal disorder Dear All, I am stuck with this problem for 2 months and hope you could help. We have a 2.1 A dataset for a 380 amino acid long protein. The space group is I4 (single molecule in asymmetric unit, 48% solve

Re: [ccp4bb] High Rfree: Phasing issue or partial crystal disorder

2017-04-12 Thread Pravinkumar Jagtap
Dear Mark, Thanks for your reply. I have already tried P1 SG (we do have 360 degree data) and Zanuda server without success. I do now have crystals in different conditions (and visually they are of different shape). In parallel I am trying heavy metal soaking and hope one of the strategy will

Re: [ccp4bb] High Rfree: Phasing issue or partial crystal disorder

2017-04-12 Thread Mark J van Raaij
Dear Pravin, we've had a couple of these unfortunately, in our case the only solution has been to find alternative crystal forms. Or several crystal forms in which different domains are disordered, but allowing to make a composite, complete structure for interpretation. Your N-terminal domain

[ccp4bb] High Rfree: Phasing issue or partial crystal disorder

2017-04-11 Thread Pravinkumar Jagtap
Dear All, I am stuck with this problem for 2 months and hope you could help. We have a 2.1 A dataset for a 380 amino acid long protein. The space group is I4 (single molecule in asymmetric unit, 48% solvent content) and the dataset is quite perfect (no obvious pathologies). The protein itself is