Dear All,
I cannot resist responding to this request that Lisa has made. I am very
surprised that no one has mentioned Roman Laskowski's program PDBSUM. It
does a great job applying secondary structure prediction by Lisa Holme and
will mark the beginning and ending of strands and helices. Try it.
My point was that the second hit in the google list, was the CCP4's own program
to make topology diagrams.
There was no issue of installing anything - it was an issue of looking if ccp4
has a program that makes
topology diagrams. If you don't like that program, you could ask is there
another
I like Topdraw very much, have been using it since 2005. But as far as i understand it will not make a topological
figure of my protein with a b-sheet and helix based on its crystal structure. It is a drawing tool to help you make
your own topology drawing. (I will be very happy to learn if I
Hi all,
I want to make a topological figure of my protein with a b-sheet and helix
based on its crystal structure. Please recommend some online sever of
software?
Thank you.
lisa
Espript will do. http://espript.ibcp.fr/
Good luck,
Jon
On 9 Mar 2013 11:52, LISA science...@gmail.com wrote:
Hi all,
I want to make a topological figure of my protein with a b-sheet and
helix based on its crystal structure. Please recommend some online sever of
software?
Thank you.
On 9 Mar 2013, at 12:11, Jon Agirre wrote:
Espript will do. http://espript.ibcp.fr
Well, if you want a topology diagram, espipt will not do. Brilliant as it may
be, it will annotate the topology linearly on top of a set of aligned sequences
(and more!).
As for a topology diagram, I
Still, I would second Lisa's question. Your google search gives a lot of false hits, and one doesn't want to download
and install a dozen programs (with license forms to fill out in some cases) to see which one works, when Partha can tell
us that Pro-origami will do it and provide a link to the
