We would like to inform everyone that the CellML website has been
updated recently. Specifically we have added the names of research
groups who we believe are actively involved, in any capacity, with the
CellML project.
This page can be viewed at:
http://www.cellml.org/related_efforts
We would
will be published
shortly.
For more information please see the CellML Workshop 2008 announcement page:
http://www.cellml.org/workshop/workshop2008/
or contact Catherine Lloyd, Poul Nielsen or Peter Hunter.
Registration is free, and can be arranged my emailing Catherine at
[EMAIL PROTECTED]
We
=70 for
a bit of discussion on this issue within CellML - feel free to add to
that discussion!
Not sure if I can offer much more help than that but let me know if
you have any more questions...
David.
Catherine Lloyd wrote:
Dear Rui
You are welcome!
Hmmm, much as I would hate to lose
Dear All
I just want to thank everyone who presented, chaired, attended and
contributed to the group discussions at the CellML Workshop last week.
The day provided us with valuable community feedback, ideas, and
collaboration opportunities.
For those of you who were unable to attend the
Randall asked me to circulate to discussion 1st.
On 19/08/2008, at 2:59 PM, James Lawson wrote:
Hi Catherine,
Weren't we going to put this through the meeting on Wednesday first?
Ah too late I guess :) Hopefully we don't get bombarded with
feedback quite yet.
bw,
j
Catherine Lloyd
? Or did you come up
with them yourselves?
We will attempt to implement these equations in the CellML models and
I will let you know if we are successful.
Best wishes
Catherine
On 29/12/2008, at 10:35 AM, Nicolas Le novère wrote:
Catherine Lloyd wrote:
Looking at the equations
.
Best wishes
Catherine
On 29/12/2008, at 10:45 AM, Nicolas Le novère wrote:
Catherine Lloyd wrote:
I thought that this might have been the case. I believe we can
mimic your events as you describe them below in CellML by using
piecewise equations.
Just out of interest, where did you get
Dear All
Just to inform you that a friendfeed room for the CellML SBGN SBO
BioPAX MIASE Workshop (5th-9th April) has been created:
http://friendfeed.com/rooms/cellml-sbgn-sbo-biopax-miase-2009.
Anyone who is attending the meeting is welcome to contribute their
thoughts - and for those of
If you are interested in attending the 2010 CellMl workshop
registration is now open. The registration form and more information
about the event can be found on the CellML website:
http://www.cellml.org/community/events/workshop/2010
Best wishes
Catherine
Dear All
We are looking towards using the MIRIAM Standard for the basic set of
CellML model curation flags. In order to do this we need to consider
how we are going to address the following point:
Is the model linked to a precise statement about the terms of
distribution?
This issue
/1 Catherine Lloyd c.ll...@auckland.ac.nz
mailto:c.ll...@auckland.ac.nz
Dear All
We are looking towards using the MIRIAM Standard for the basic set
of CellML model curation flags. In order to do this we need to
consider how we are going to address the following point:
Is the model
Dear all
We would like to advertise that the preliminary programme for the 2010
CellML workshop has recently been outlined. Details can be found on
the CellML website:
http://www.cellml.org/community/events/workshop/2010/programme
We'd also like to take this opportunity to invite
Dear Hannes
Yes, you are welcome to use this image. We are in the process of
applying a Creative Commons Attribution license to the repository and
all it's content, however since we are not quite there yet if you use
this image please just cite the Bioinformatics paper.
If any of the
Dear All
We have received a number of requests for an audio-visual connection
to the CellML hackathon and workshop allowing people to attend
remotely. I have set up meeting rooms on Evo:
http://evo.caltech.edu/evoGate/
If you would like to remotely attend the hackathon and/or the
Dear All
Some further information on the EVO virtual meeting room.
The meetings are password protected. If you are trying to get to
grips with EVO - firstly thank you for doing this in advance of the
meeting! - but you will find you will not be able to login to the
meeting itself until
forwarded message:
From: Lucian Smith lpsm...@spod-central.org
Date: 24 February 2010 9:38:13 AM
To: Catherine Lloyd c.ll...@auckland.ac.nz
Subject: Re: [cellml-discussion] Evo connection
-Currently, I must run my program from the directory with the
'components/'
subdirectory. Is there a way I
Dear All
Please find pdfs of all the CellML workshop presentations online at:
http://www.cellml.org/community/events/workshop/2010
Best wishes
Catherine
___
cellml-discussion mailing list
cellml-discussion@cellml.org
Funny - we just realised this ourselves in this morning's CellML
meeting. Lukas is talking with Andrew right now about events - and I
think he wants to talk with Poul about this too... I'm sure you'll
get some more feedback.
Best wishes
Catherine
On 17/03/2010, at 11:02 AM, Lucian Smith
A stellar effort Lucian - congratulations!
little-used CellML constructs such as partial differential equations
or
rates of change with respect to some non-time variable
Yes - these are a legacy of coding up models in a text editor without
any way of testing them! Partial diffs can be
Dear All
Three weeks ago I sent out an email soliciting feedback on the
proposed curation flags for the CellML model repository.
In the absence of any response I will assume that everyone is happy
with the initial proposal and Tommy and I will begin to work on the
realisation of these
My apologies - my original email was more exclusive to its recipients that to the discussion list!I will be happy to leave this another week to give anyone else a change to respond if they have comments.Best wishesCatherineBegin forwarded message:*From: *Catherine Lloyd c.ll...@auckland.ac.nz
Thanks Dougal.
Just to let you all know I've added a comment to the bottom of the
minutes.
Best wishes
Catherine
On 23/07/2010, at 5:00 AM, Dougal Cowan wrote:
I have put the minutes from this week's meeting up at:
http://www.cellml.org/community/meeting/minutes/2010/07.21
Thanks,
Hi Felix
Following up on what Andre wrote, I can confirm the diagrams are drawn
by hand using Adobe Illustrator. The original files are .ai (from
Adobe Illustrator) and they are converted to .png (for the website)
and .svg (for the OpenCell session files).
We have a library of glyphs
Illustrator file format very well though, I tried opening the glyph
library in Inkscape and I only got part of a cell membrane. It would
be nice if the glyph library was also available in SVG format for
people without access to Adobe Illustrator.
Thanks,
Adam
On 14 October 2010 08:23, Catherine
Hi Hannes
If you give me a couple of hours I can work on the model for you. As
the CellML curator it's my job and I am also interested in getting
these models working.
If you want to take me up on this offer please email the latest copy
of the model to me and I can get back to you -
Dear all
I know I am no longer part of the CellML team but I did read this
week's meeting minutes and I want to comment on this fantastic progress:
Amy: has coded up the Swat 2004 model in CellML and pushed it to the
repository.
Camille: has coded up and pushed Goldbeter et al. 2007 and
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