Re: [cellml-discussion] Switching between graphs in PCEnv: Opinions sought

Hi Andrew, My preference is for Tabs but you could still keep the title bar – just use a shorter one (say half the width of the pane) and put the tabs after that. It is important to be able to preserve the layout of windows and which traces are displayed so that you can get back quickly to a c

Re: [cellml-discussion] fixed model - "A Model for Human Ventricular Tissue"

Hi James, I'm a bit puzzled - the link you have to version 4 is documented as shown below - but this looks like a comment on version 1. All stars (on my webpage anyway) are greyed out - should one be yellow? I think you should ask Tommy to drop the number of stars back to one. When I run tha

Re: [cellml-discussion] Interactions between SVG diagrams and PCEnv.

interpret such a request and show the appropriate trace, but that might get a bit restrictive. Andre. Andrew Miller wrote: Hi all, Peter Hunter has proposed that it be possible to create SVG diagrams which interact with PCEnv so that you can click on parts of the SVG diagra

Re: [cellml-discussion] PMR categories

Dear All, The intention of this discussion was to decide on a list of items for a drop-down list of predefined terms that would be available when choosing 'key words' for a new model and which would be the list of terms used to display models on www.cellml.org/models (together with the defaul

Re: [cellml-discussion] PMR categories

Dear All, Poul and I have looked at the discussion on this thread and to best encompass the various suggestions we've decided to ask Tommy to do the following: 1. Include both a category field with predefined terms (Tommy has this in now) and an additional general 'key word' field. A model ca

Re: [cellml-discussion] Bug in Nygren model

Title: Bug in Nygren model Hi Daniel, Thanks for figuring that out. Would you mind sending the change (or corrected model) to James (CC'd) - he is our principal CellML curator at the moment. Cheers, Peter [EMAIL PROTECTED] wrote: Hi, I found a bug in the Nygren et al. mod

Re: [cellml-discussion] ABI CellML team meeting minutes 2008-05-32

Hi James, Excellent notes! Frank Sachse's name is misspelt near the end. Cheers, Peter James Lawson wrote: Apologies, that link should be http://www.cellml.org/meeting_minutes/abi-meeting-minutes-2008-05-21/ James James Lawson wrote: Dear all, The ABI CellMl team meeting minutes are now u

Re: [cellml-discussion] unit conversion

Hi Mike, I agree - but there they are in the SI base unit list see http://physics.nist.gov/cuu/Units/units.html so probably 150 years too late to do much about it! Cheers, Peter Mike Cooling wrote: Does it strike anyone else as inconsistent that 'moles' are a unit when moles are just a scaling

Re: [cellml-discussion] in case you haven't seen it | "Why Are Computational Neuroscience and Systems Biology So Separate?"

Hi James, Re your final question - the Physiome Project at the moment is largely about (i) the development of the markup languages CellML and FieldML (& maybe ModelML for the physics) and their associated model repositories and software tools, and (ii) strategies for bridging spatial and tempor

Re: [cellml-discussion] Opinion on multiple standards

Dear Michael, I agree completely with your views. Our combined challenge now is to try to agree on common metadata standards that suit both SBML and CellML. The meeting in April will be an opportunity to do this. Cheers, Peter Michael Hucka wrote: AT> P.S. regarding different standards or

Re: [cellml-discussion] Using CellML for simplified neuron models? (Alan Garny)

Thanks Poul. -- Sent using BlackBerry - Original Message - From: cellml-discussion-boun...@cellml.org To: CellML Discussion List Sent: Fri Jun 05 09:22:23 2009 Subject: Re: [cellml-discussion] Using CellML for simplified neuron models? (Alan Garny) Dear Ha

Re: [cellml-discussion] ABI CellML team meeting minutes 2009-07-22

Hi Justin, Some agenda items for the next CellML mtg: 1. I noticed a bug on the new website where the 'home page' reverts to the models top page instead of the CellML home page. 2. A plea from users for implementation of more session files. In particular the Iribe et al model needs to be setup

Re: [cellml-discussion] ABI CellML team meeting minutes 2009-07-22

Hi Catherine, The link on the Iribe model page did let me load OpenCell with the session file, but gave error messages. I take your point re session files in general - we do need to make it easier to create them as the difference between models with (including SVG files) & without them is day &

Re: [cellml-discussion] ABI CellML meeting minutes 2009-09-30

Thanks Dagmar. We are committed to SED-ML! Your comments are very helpful. Peter -- Sent using BlackBerry - Original Message - From: cellml-discussion-boun...@cellml.org To: CellML Discussion List Sent: Fri Oct 09 19:41:19 2009 Subject: Re: [cellml-discussion] A

Re: [cellml-discussion] Remote "attendance" at the CellML hackathon and workshop

Thanks Catherine! -- Sent using BlackBerry - Original Message - From: cellml-discussion-boun...@cellml.org To: CellML Discussion List Sent: Wed Feb 10 09:03:00 2010 Subject: [cellml-discussion] Remote "attendance" at the CellML hackathon and workshop Dear A

Re: [cellml-discussion] CellML for R

Hi Erin, Yes, definitely - not least because both R and CellML originated in Auckland. I'll speak to Ross Ihaka about this to get his thoughts. Cheers, Peter -- Sent using BlackBerry From: cellml-discussion-boun...@cellml.org To: cellml

Re: [cellml-discussion] ABI CellML Meeting Minutes, 25th May 2011

Thanks Lucian, my mistake I think, I got *Darren *Wilkinson mixed up with *Daryl *Shanley - both at Newcastle. Cheers, Peter On 27/05/2011 9:43 a.m., Lucian Smith wrote: For what it's worth, it's 'Darren', not 'Darryl' (the SBML 'distrib' package guy). -Lucian * Dougal Cowan [2011-05-26 22:3

Re: [cellml-discussion] Solicitation of feedback on CellML 1.2

Hi Andre, Support for models with parameter uncertainty is pretty urgent in relation to grants but I'm in your hands re optimal strategy for getting there. Cheers, Peter -- Sent using BlackBerry From: David Nickerson [mailto:david.nicker...@gmail.com] Sent: Monday, Octo

Re: [cellml-discussion] Java error on Mac OSX10.8.2

Hi Mark, FYI, there is a new CellML simulation tool called OpenCOR being developed by Alan Garny that is becoming our primary platform for CellML-based modelling (see http://www.cellml.org/getting-started/tutorials/opencordemo for download instructions). This will shortly have CellML authorin