Looks like CentOS7 is 4 years behind...
clipper-2.1-26.20140911 vs. clipper_version=2.1.20180802
;-)
On Fri, 8 Apr 2022 02:10:27 +0100
Paul Emsley wrote:
> On 08/04/2022 02:08, C.J. wrote:
> > I checked my clipper. The version is below.
> >
On 08/04/2022 02:08, C.J. wrote:
I checked my clipper. The version is below.
Package clipper-2.1-26.20140911.el7.x86_64 already installed and
latest version
Here is the version of clipper-devel.
Package clipper-devel-2.1-26.20140911.el7.x86_64 already installed and
latest version
From the
GCC) 8.3.1 20190311 (Red Hat 8.3.1-3)
> > Copyright (C) 2018 Free Software Foundation, Inc.
> > This is free software; see the source for copying conditions. There is NO
> > warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> > PURPOSE.
> >
> > I tried to build it with
tried to build it with the script
(https://raw.githubusercontent.com/pemsley/coot/gtk3/build-it-3-3).
But it failed with unknown reasons. The build.log says only "coot
build failed, exiting" in the last line without any other error
messags. See below for last 20 lines.
numpy is found, ski
https://raw.githubusercontent.com/pemsley/coot/gtk3/build-it-3-3).
But it failed with unknown reasons. The build.log says only "coot build
failed, exiting" in the last line without any other error messags. See
below for last 20 lines.
numpy is found, skip
building rdkit 2020_09_3
building
Hi Paul,
I don't have problems building coot on Debian, be it stable (bullseye)
or testing (bookworm). Also the tests pass
as expected. This is with default options. It is just that the
build-it script seems to set a flag such that the static archives
instead of the dynamic libraries get packed
Hi Paul
Dne 10/26/2021 v 4:37 PM Paul Emsley napsal(a):
> On 20/10/2021 14:12, Jan Stransky wrote:
>> Update, no-guile build version passed, but I dont see the icons :-)
>
>
> I don't think that those things are related. I don't know much about
> icons, maybe there something of interest in the
On 20/10/2021 14:12, Jan Stransky wrote:
Update, no-guile build version passed, but I dont see the icons :-)
I don't think that those things are related. I don't know much about
icons, maybe there something of interest in the console output.
Jan
On 10/20/21 14:04, Jan Stransky wrote:
Update, no-guile build version passed, but I dont see the icons :-)
Jan
On 10/20/21 14:04, Jan Stransky wrote:
> Hi,
>
> since CCP4-bundled Coot is not working in the second latest Ubuntu
> (21.04), I went into the adventure of building it my own, using the
> build-it script.
>
> Everything
Hi,
since CCP4-bundled Coot is not working in the second latest Ubuntu
(21.04), I went into the adventure of building it my own, using the
build-it script.
Everything builds an works (as far as I can tell) up to the point of
building Coot it self. The log congratulates me on using Guile, and
Hello Paul,
with the latest build-it script, executed on Debian bookworm, the
tar-archive is missing the dynamic libraries. Only the archives are
packed.
The build-script finishes with
[...]
second coot test passed
about to publish files:
finished.
Would you mind taking a look at the logs in
build is done, coot is running fine.
amazing script!
-Bryan
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it is chugging along, but is it bad if it says this :
./build-it.sh: line 2065:
/home/lepore/autobuild/Linux-hostname-pre-release-gtk2-python/bin/guile-config:
No such file or directory
./build-it.sh: line 2067:
/home/lepore/autobuild/Linux-hostname-pre-release-gtk2-python/bin/guile-config:
No
On 07/01/2021 14:55, Bryan Lepore wrote:
Greetings - I noticed the last copyright in the build-it script is
2016 - is there any current guidance for this script (before I get
carried away with it)?
I'm not on top of the license and copyright notices. But I suppose now
is the time to update
Greetings - I noticed the last copyright in the build-it script is 2016 -
is there any current guidance for this script (before I get carried away
with it)?
-Bryan
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OK, actually looking at what you wrote this time… your patch makes sense to
me. I guess your patch fixes several cases of underlinking, which would also
explain how Marcin’s suggestion addresses it. I further suspect that
geometry/make_shelx_restraints doesn’t actually need to link to
In what I gather is a rite of passage for folks wishing to build/use
coot, I'm running into some troubles trying to build coot from source. I
think I've got the right prerequisites built and installed:
mmdb2
libccp4
clipper-2.1
ssm-1.4
and of course the various prerequisites (python, gtk,
On Oct 27, 2014, at 16:55, Cyrus Harmon cy...@bobobeach.com wrote:
In what I gather is a rite of passage for folks wishing to build/use coot,
I'm running into some troubles trying to build coot from source. I think I've
got the right prerequisites built and installed:
mmdb2
libccp4
On 27 October 2014 20:55, Cyrus Harmon cy...@bobobeach.com wrote:
../coot-utils/.libs/libcoot-coord-utils.so: undefined reference to
`clipper::MMDBManager::cell() const'
Your linker complains that a library that is part of coot is not
linked to libclipper-mmdb.so (which is part of clipper).
Following up on my on email...
The following patch fixes the build for me from the latest SVN
coot-read-only sources. Is the list preference to paste these sorts of
things inline to the email, or to send the patch as an attachment?
If anyone has any comments/suggestions on the patches, I
Just my two cents: I would always send this as an attachment, because
some (all?) email clients will mess with line breaks.
-jens
On Mon, 2014-10-27 at 16:43 -0700, Cyrus Harmon wrote:
Following up on my on email...
The following patch fixes the build for me from the latest SVN
Thank you so much! I will try this as suggested.
Also, I installed a new version of coot and add terminal residue plus real
space refinement could do the job too!
Best,
Wei
Try to download Bernhard's key bindings (coot wiki), center on empty map
of DNA and press N. It runs tool named Cootilus, which auto-builds
nucleic acids.
In Extension toolbar, You can run RCrane, which produce new tab designed
to build NA.
Hope it helps.
Jan
On 03/17/2013 01:47 AM, Wei Shi
Hi all,
I am refining a structure of protein-DNA complex with coot. The DNA in
my search model is shorter than the DNA in the crystal, and now I
could see the density for extra DNA(6 base pairs) on either end of the
search model DNA. But, I don't know how to build the extra DNA back to
fit the
Hi,
I'm attempting to build Coot r3440 on CentOS 5 x86_64, and it fails to
build with the error:
c-interface-build-gui.cc: In function ‘void execute_refmac(GtkWidget*)’:
c-interface-build-gui.cc:484: error: cast from ‘void*’ to ‘gint’ loses precision
c-interface-build-gui.cc: In function ‘void
: x86_64--
update_libtool: 1
update_config_guess_sub: 1
AUTOBUILD_BUILD=/var/tmp/coot/src
AUTOBUILD_INSTALLED=/var/tmp/coot-build
AUTOBUILD_SOURCES=/var/tmp/coot/src/sources
BASH=/bin/sh
BASH_ARGC=()
BASH_ARGV=()
BASH_LINENO=([0]=0)
BASH_SOURCE=([0]=./build-it-gtk2-simple)
BASH_VERSINFO=([0]=3 [1]=2
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