Bug#856133: shiboken FTBFS on i386/armel/armhf: other_collector_external_operator test failed

On Sat, 4 Mar 2017 20:06:36 +0100 gregor herrmann wrote: > On Sat, 25 Feb 2017 16:07:03 +0200, Adrian Bunk wrote: > > > Source: shiboken > > Version: 1.2.2-3 > > Severity: serious > > > > https://buildd.debian.org/status/package.php?p=shiboken=sid > > > > FWIW, the package

Bug#857921: Unwritable cache for new jars

Gilles Filippini a écrit le 20/03/2017 à 21:58 : > Hi, > > On Thu, 16 Mar 2017 12:25:46 +0100 Ole Streicher <oleb...@debian.org> wrote: >> Package: jython >> Version: 2.5.3-15 >> Severity: normal >> >> when I use jython to import from a j

Bug#857921: Unwritable cache for new jars

Hi, On Thu, 16 Mar 2017 12:25:46 +0100 Ole Streicher wrote: > Package: jython > Version: 2.5.3-15 > Severity: normal > > when I use jython to import from a jar as a user, I get the following > messages: > > >>> import sys > >>> sys.path.append('/usr/share/java/adql.jar') >

Bug#855929: mclibs: FTBFS: Test failures

-Nru mclibs-20061220+dfsg3/debian/changelog mclibs-20061220+dfsg3/debian/changelog --- mclibs-20061220+dfsg3/debian/changelog 2013-08-23 19:13:53.0 +0200 +++ mclibs-20061220+dfsg3/debian/changelog 2017-03-05 22:14:26.0 +0100 @@ -1,3 +1,11 @@ +mclibs (20061220+dfsg3-3.

Bug#855810: libhdf5-openmpi-100 doesn't work on arm64

Package: libhdf5-openmpi-100 Version: 1.10.0-patch1+docs-3 Severity: important -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 The attached simple testcase fails on arm64 with: HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) MPI-process 0: #000: ../../../src/H5F.c line 491 in H5Fcreate():

Bug#855689: jython.jar does not provide a Class-Path

00 +0100 +++ jython-2.5.3/debian/changelog 2017-02-21 20:22:33.0 +0100 @@ -1,3 +1,9 @@ +jython (2.5.3-15) UNRELEASED; urgency=medium + + * Set 'Class-Path' into jython.jar's manifest (closes: #855689) + + -- Gilles Filippini <p...@debian.org> Tue, 21 Feb 2017 20:22:33 +0100 + jy

Bug#855130: med-fichier: MED library is not compatible with HDF5 1.10

On Wed, 15 Feb 2017 20:05:59 +0100 Anton Gladky wrote: thanks for your effort on this bug, very appreciate. Unfortunately the provided patch does not solve the problem. med-fichier still fails on autopkgtests and unit tests. I have to remove the patch tag. I've received a patch from upstream

Bug#855130: med-fichier: MED library is not compatible with HDF5 1.10

Control: tags -1 + patch On 2017-02-14 14:37, Gilles Filippini wrote: Source: med-fichier Version: 3.0.6-11 Severity: grave Justification: renders package unusable Hi, From the Salome Platform support forum [1]: Problems with Salome and Code Saturne in Debian Posted by Elektrix at January

Bug#855130: med-fichier: MED library is not compatible with HDF5 1.10

Source: med-fichier Version: 3.0.6-11 Severity: grave Justification: renders package unusable Hi, From the Salome Platform support forum [1]: > Problems with Salome and Code Saturne in Debian > Posted by Elektrix at January 03. 2017 > > Hello all, > > I'm trying to set up a CFD case with

Bug#806879: xsp: FTBFS when built with dpkg-buildpackage -A (dh_clideps fails)

Control: tags -1 + patch On Wed, 02 Dec 2015 12:09:08 + Santiago Vila wrote: > Package: src:xsp > Version: 3.8-2.1 > User: sanv...@debian.org > Usertags: binary-indep > Severity: important > > Dear maintainer: > > I tried to build this package with "dpkg-buildpackage

Bug#812002: smokeqt: FTBFS with GCC 6: deleted function

Control: tags -1 + patch On Tue, 19 Jan 2016 20:25:00 -0800 Martin Michlmayr wrote: > Package: smokeqt > Version: 4:4.14.3-1 > Severity: important > User: debian-...@lists.debian.org > Usertags: ftbfs-gcc-6 > > This package fails to build with GCC 6. GCC 6 has not been released >

Bug#852908: mako: FTBFS: Test failures

Control: tags -1 + patch On Sat, 4 Feb 2017 14:37:33 +0500 Andrey Rahmatullin wrote: > Looks like the problem is caused by something in Pygments but apart from > making sure the version used is the same I don't know how to proceed. The failure is caused by the recent upload of

Bug#849315: ruby-rabl: FTBFS: Rabl::Engine without bson root #attribute asserts that it can add attribute under a different key name

@@ -1,3 +1,11 @@ +ruby-rabl (0.13.0-1.1) UNRELEASED; urgency=medium + + * Non-maintainer upload. + * def-bson-serialize.patch: reintroduce BSON.serialize method dropped +from ruby-bson since release 2.0.0 (closes: #849315) + + -- Gilles Filippini <p...@debian.org> Sun, 05 Feb 2017 16:0

Bug#852163: python3.5-minimal wont configure

Hi, On Sat, 21 Jan 2017 23:48:49 -0800 Gary Roach wrote: > Package: python3.5-minimal > Version: 3.5.3~rc1-1 > OS: Debian Stretch 64 bit > Kde Desktop > > Three different mirror sites gave the same results. > > Aptitude and apt-get consistantly give the following: >

Bug#852130: redmine: fails to install, remove, and install again

Hi, On Sun, 22 Jan 2017 14:29:27 -0200 Antonio Terceiro wrote: > On Sat, Jan 21, 2017 at 08:46:22PM +0100, Andreas Beckmann wrote: > > Package: redmine > > Version: 3.3.1-2 > > Severity: serious > > User: debian...@lists.debian.org > > Usertags: piuparts > > > > Hi, > > >

Bug#849932: libindicate: FTBFS (Fields cannot have void type)

Control: reassign -1 gtk-sharp2-gapi Control: affects -1 src:libindicate Control: retitle -1 gtk-sharp2-gapi: gapi2-codegen generates fields with void type Gilles Filippini a écrit le 01/02/2017 à 00:05 : > On Mon, 02 Jan 2017 12:01:41 + Santiago Vila <sanv...@debian.org> wrote: &

Bug#849932: libindicate: FTBFS (Fields cannot have void type)

On Mon, 02 Jan 2017 12:01:41 + Santiago Vila wrote: > Package: src:libindicate > Version: 0.6.92-3 > Severity: serious > > Dear maintainer: > > I tried to build this package in stretch with "dpkg-buildpackage -A" > (which is what the "Arch: all" autobuilder would do to

Bug#848813: blacs-mpi: FTBFS: make[3]: *** No rule to make target '/usr/lib/openmpi/include/mpif.h', needed by 'mpif.h'. Stop.

Control: tags -1 + patch On Sun, 1 Jan 2017 17:38:52 +0500 Andrey Rahmatullin wrote: > On Mon, Dec 19, 2016 at 10:26:42PM +0100, Lucas Nussbaum wrote: > > > make[3]: *** No rule to make target '/usr/lib/openmpi/include/mpif.h', > > > needed by 'mpif.h'. Stop. > The

Bug#853653: Fwd: Re: Fwd: Bug#853653: scilab: ftbfs with GCC-7

r <paul.bign...@gmail.com>, Gilles Filippini <p...@debian.org> Hi, Thanks for the information, this is fixed in the latest master branch : - if (category == NULL || (lenCategory == 1 && *category == '\0')) + if (category == NULL || (lenCategory == 1 && **category == '\0')) -

Bug#760301: [Openjdk] Bug#760301: openjdk-8: Missing links to jawt_md.h and jni_md.h in /usr/lib/jvm/java-8-openjdk-amd64/include

Control: affects -1 + src:jhdf src:sikulix On Fri, 01 Apr 2016 22:16:53 +0200 Hilko Bengen wrote: > * Matthias Klose: > > >> Additionally passing -I${JAVA_HOME}/include/linux to gcc seems to work > >> around the problem in my Linux-specific case, but that can't be the > >>

Bug#851053: openjdk-8-jre-headless: Can't run a command with Runtime.exec() on kfreebsd-* - errcode 127

Control: tag -1 + patch On Sat, 14 Jan 2017 17:41:18 +0100 Gilles Filippini <p...@debian.org> wrote: > Steven Chamberlain a écrit le 13/01/2017 à 14:43 : > > Hello, > > > > Gilles Filippini wrote: > >> While investigating about ant FTBFS on kfreebsd-*

Bug#851053: openjdk-8-jre-headless: Can't run a command with Runtime.exec() on kfreebsd-* - errcode 127

Steven Chamberlain a écrit le 13/01/2017 à 14:43 : > Hello, > > Gilles Filippini wrote: >> While investigating about ant FTBFS on kfreebsd-* [1][2], I tried the >> very simple testcase below. It fails with errcode 127 on kfreebsd-*: > > Many thanks for the report

Bug#847974: xmds2: FTBFS in stretch

Control: reassign -1 liboctave-dev Control: tag -1 + patch On Sat, 14 Jan 2017 09:57:42 +0100 Gilles Filippini <p...@debian.org> wrote: > Control: reassign 847974 octave > Control: retitle 847974 octave: wrong size for octave_hdf5_id wrt hdf5 1.10 > Control: affects 847974 + src:xm

Bug#842177: Bug#847974: xmds2: FTBFS in stretch

ot a location >> major: Invalid arguments to routine >> minor: Inappropriate type >> #001: ../../../src/H5Gloc.c line 253 in H5G_loc(): invalid object ID >> major: Invalid arguments to routine >> minor: Bad value >> ... [snip] > What happened w

Bug#848753: cython: FTBFS: Test failures

On Thu, 12 Jan 2017 20:30:37 +0100 Gilles Filippini <p...@debian.org> wrote: > Relevant part is: > > FAIL: numpy_test () > Doctest: numpy_test > -- > Traceback (most recent call last): > File &qu

Bug#848753: cython: FTBFS: Test failures

On Mon, 19 Dec 2016 22:14:43 +0100 Lucas Nussbaum wrote: > Source: cython > Version: 0.25.2~b0-2 > Severity: serious > Tags: stretch sid > User: debian...@lists.debian.org > Usertags: qa-ftbfs-20161219 qa-ftbfs > Justification: FTBFS on amd64 > > Hi, > > During a rebuild of

Bug#850945: ant: exec task fails with error 127 on kfreebsd-i386

Emmanuel Bourg a écrit le 11/01/2017 à 15:21 : > Hi Gilles, > > Le 11/01/2017 à 14:54, Gilles Filippini a écrit : > >> Moreover, ant reports BUILD SUCCESSFUL while it is obviously unsuccessful. > > The task doesn't fail the build by default when an error occurs.

Bug#851053: openjdk-8-jre-headless: Can't run a command with Runtime.exec() on kfreebsd-* - errcode 127

Package: openjdk-8-jre-headless Version: 8u111-b14-2 Severity: important -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, While investigating about ant FTBFS on kfreebsd-* [1][2], I tried the very simple testcase below. It fails with errcode 127 on kfreebsd-*: $ cat MyTest.java public

Bug#850945: ant: exec task fails with error 127 on kfreebsd-i386

Package: ant Version: 1.9.6-1 Severity: important Hi, This simple build.xml file fails with error 127 on kfreebsd-i386: $ cat build.xml $ ant test Buildfile: /home/pini/debian/jxgrabkey-0.3.2/misc/Ant/build.xml test: [exec] Result: 127 BUILD SUCCESSFUL

Bug#848178: gimagereader fails to start

Control: severity -1 normal On Fri, 16 Dec 2016 12:23:03 +0100 Philip Rinn wrote: > Hi Adrian, > > On 15.12.2016 at 20:50, Adrian Bunk wrote: > > Please do not close bugs that are actual bug - the generated > > dependencies must ensure that problems like the issue in this

Bug#850292: stunnel4: killed by shadowserver.org port scanner

Package: stunnel4 Version: 3:5.38-1 Severity: important Hi, I use stunnel4 to tunnel SSH over SSL, and I experience daily failures triggered by shadowserver.org port scanning [1][2]. Here is the pattern from journalctl: janv. 04 14:53:55 maison stunnel[13384]: LOG5[6]: Service [ssh] accepted

Bug#850183: stretch-ignore tag for RC bug #844134 against scilab

Package: release.debian.org Severity: normal Hi Release Team, Would you agree to tag #844134 (scilab segfaults with TSX) stretch-ignore since TSX is about to be disabled for stretch [1][2]? [1] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=844134#32 [2]

Bug#844134: Request for help - scilab segfaults with TSX

On 2017-01-04 19:51, Samuel Thibault wrote: Hello, Gilles Filippini, on Wed 04 Jan 2017 19:31:28 +0100, wrote: On Wed, 28 Dec 2016 02:23:24 +0200 Adrian Bunk <b...@stusta.de> wrote: > This looks like a threading bug in Scilab exposed by TSX. I've just noticed this RC bug [1] again

Bug#844134: Request for help - scilab segfaults with TSX

Control: tag -1 + help Hi, On Wed, 28 Dec 2016 02:23:24 +0200 Adrian Bunk wrote: > This looks like a threading bug in Scilab exposed by TSX. I've just noticed this RC bug [1] against scilab. After reading through the recent thread on this subject [2] I must admit I have no clue

Bug#849466: execnet: testing/test_basics.py::test_stdouterrin_setnull[thread] FAILED

Hi, On Tue, 27 Dec 2016 14:11:17 +0100 Daniel Stender wrote: > Source: execnet > Version: 1.4.1-2 > Severity: important > > This is another test failure from DEP-8, occuring when testing on Python 3.5: > > > testing/test_basics.py::test_stdouterrin_setnull[thread]

Bug#849116: ITP: env2 -- convert environment variables between scripting languages

Gilles Filippini a écrit le 22/12/2016 à 19:35 : > Package: wnpp > Severity: wishlist > Owner: Gilles Filippini <p...@debian.org> > > * Package name: env2 > Version : 20130410 > Upstream Author : David C. Black <dcbl...@hldwizard.com> > * URL

Bug#849116: ITP: env2 -- convert environment variables between scripting languages

Package: wnpp Severity: wishlist Owner: Gilles Filippini <p...@debian.org> * Package name: env2 Version : 20130410 Upstream Author : David C. Black <dcbl...@hldwizard.com> * URL : https://sourceforge.net/projects/env2/ * License : Apache 2.0 Prog

Bug#827280: jython: Jython 2.7.0 released 2015-05, package should be updated

Gilles Filippini a écrit le 11/12/2016 à 15:40 : > Emmanuel Bourg a écrit le 11/12/2016 à 00:02 : >> Le 10/12/2016 à 14:56, Gilles Filippini a écrit : >> >>> It's too late for stretch, because it would trigger a transition. >>> Anyway, I've made a packag

Bug#846923: mpb: FTBFS on mipsel - hanging on autconf test for BLAS zdotc

Thorsten Alteholz a écrit le 11/12/2016 à 16:31 : > > > On Sat, 10 Dec 2016, Gilles Filippini wrote: >> Will you upload the binary packages for mipsel then? > > Sure, do I have to consider something? I have never done a binary only > upload. > > I would add an ent

Bug#827280: jython: Jython 2.7.0 released 2015-05, package should be updated

Emmanuel Bourg a écrit le 11/12/2016 à 00:02 : > Le 10/12/2016 à 14:56, Gilles Filippini a écrit : > >> It's too late for stretch, because it would trigger a transition. >> Anyway, I've made a package for release 2.7.0. >> Emmanuel, permission to upload to experimental?

Bug#846923: mpb: FTBFS on mipsel - hanging on autconf test for BLAS zdotc

Thorsten Alteholz a écrit le 10/12/2016 à 12:05 : > severity 846923 normal > tags 846923 help > thanks > > On Sun, 4 Dec 2016, Gilles Filippini wrote: >> I tested the build on porter box eller.debian.org with the very same >> result. > > I am afraid you have been

Bug#827280: jython: Jython 2.7.0 released 2015-05, package should be updated

On Tue, 14 Jun 2016 15:45:07 +0100 Russel Winder wrote: > Package: jython > Version: 2.5.3-9 > Severity: normal > > Dear Maintainer, > > The jython package reports version 2.5.3, but Jython 2.7.0 was release > 2015-05 and so the package should be > updated. It's too late

Bug#842177: transition: hdf5

Gilles Filippini a écrit le 04/12/2016 à 12:36 : > Emilio Pozuelo Monfort a écrit le 03/12/2016 à 12:26 : >> On 01/12/16 19:38, Emilio Pozuelo Monfort wrote: >>> On 01/12/16 19:32, Gilles Filippini wrote: >>>> Gilles Filippini a écrit le 28/11/2016 à 10:05 : >>&

Bug#846353: FTBFS: ERROR: Test "ruby2.3" failed. Exiting.

Sebastiaan Couwenberg a écrit le 03/12/2016 à 19:33 : > Control: tags -1 pending > > On 12/03/2016 07:19 PM, Gilles Filippini wrote: >> I've filed #846853 against src:hdf-eos5. There are issues in >> ruby-hdfeos5 as well. See the attached patch. >> >> With these

Bug#842815: Re-opening: Please support HDF5 1.10

pini a écrit le 04/12/2016 à 12:42 : > Hi, > > On Wed, 23 Nov 2016 08:06:27 +0100 Andreas Tille > wrote: >> Hi Bernd, >> >> On Wed, Nov 23, 2016 at 06:54:21AM +0100, Bernd Rinn wrote: >>> the migration of JHDF5 to HDF5 1.10 is ongoing and mostly depend on me >>> having a

Bug#846853: hdf-eos5: diff for NMU version 5.1.15.dfsg.1-8.1

hid_t.patch: hid_t isn't native int anymore (closes: #846853) + + -- Gilles Filippini <p...@debian.org> Sat, 03 Dec 2016 01:48:32 +0100 + hdf-eos5 (5.1.15.dfsg.1-8) unstable; urgency=medium * Patch to build against hdf5-1.10.1: use hid_t not int (hid_t == int64_t diff -Nru hdf-eos5-5.1.1

Bug#842177: transition: hdf5

Emilio Pozuelo Monfort a écrit le 03/12/2016 à 12:26 : > On 01/12/16 19:38, Emilio Pozuelo Monfort wrote: >> On 01/12/16 19:32, Gilles Filippini wrote: >>> Gilles Filippini a écrit le 28/11/2016 à 10:05 : >>>> Emilio Pozuelo Monfort a écrit le 27/11/2016 à 23:52 : &

Bug#846923: mpb: FTBFS on mipsel - hanging on autconf test for BLAS zdotc

Source: mpb Version: 1.5-2 Severity: serious Justification: FTBFS -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, mpb now FTBFS on mipsel [1]. It is caused by the autoconf test for BLAS zdotc never terminating. Then the build is killed after 150 min of inactivity. [1]

Bug#846372: vtk6: diff for NMU version 6.3.0+dfsg1-2.1

On Thu, 1 Dec 2016 11:29:25 + Iain Lane wrote: > On Thu, Dec 01, 2016 at 11:21:49AM +, Iain Lane wrote: > > Control: tags 846372 + pending > > > > This one works. Here's the diff which I'm uploading to DELAYED/5. Let me > > know if you want to handle it

Bug#846353: FTBFS: ERROR: Test "ruby2.3" failed. Exiting.

Control: block -1 by 846853 Control: tags -1 + patch Gilles Filippini a écrit le 03/12/2016 à 02:34 : > Gilles Filippini a écrit le 03/12/2016 à 01:35 : >> Gilles Filippini a écrit le 02/12/2016 à 23:26 : >>> Sebastiaan Couwenberg a écrit le 02/12/2016 à 15:34 : >>&

Bug#846853: hdf-eos5: Unusable on 32 bit arches - Makes ruby-hdfeos5 FTBFS

:32.0 +0100 @@ -1,3 +1,10 @@ +hdf-eos5 (5.1.15.dfsg.1-8.1) unstable; urgency=medium + + * Non-maintainer upload + * New patch hid_t.patch: hid_t isn't native int anymore + + -- Gilles Filippini <p...@debian.org> Sat, 03 Dec 2016 01:48:32 +0100 + hdf-eos5 (5.1.15.dfsg.1-8) unstable; urgency=

Bug#846353: FTBFS: ERROR: Test "ruby2.3" failed. Exiting.

Gilles Filippini a écrit le 03/12/2016 à 01:35 : > Gilles Filippini a écrit le 02/12/2016 à 23:26 : >> Sebastiaan Couwenberg a écrit le 02/12/2016 à 15:34 : >>> On 12/02/2016 09:55 AM, Sebastiaan Couwenberg wrote: >>>> On 12/01/2016 07:48 PM, Sebastiaan Couwenberg wr

Bug#846353: FTBFS: ERROR: Test "ruby2.3" failed. Exiting.

Gilles Filippini a écrit le 02/12/2016 à 23:26 : > Sebastiaan Couwenberg a écrit le 02/12/2016 à 15:34 : >> On 12/02/2016 09:55 AM, Sebastiaan Couwenberg wrote: >>> On 12/01/2016 07:48 PM, Sebastiaan Couwenberg wrote: >>>> On Wed, 30 Nov 2016 15:10:03 + Iain

Bug#846353: FTBFS: ERROR: Test "ruby2.3" failed. Exiting.

orks on amd64 and other 64 bit >>>> arches), maybe due to the new hdf5 >>> >>> Quite likely, since hdf-eos5 hasn't been rebuilt for the hdf5 transition >>> yet. I suspect this issue to fix itself once that's done. >> >> It did not, but did only fail on

Bug#842817: fixed in yorick-hdf5 0.8.0-7

ian FTP archive. [cut] > Closes: 842817 > Changes: > yorick-hdf5 (0.8.0-7) experimental; urgency=medium > . >* Bug fix: "FTBFS against HDF5 v1.10", thanks to Gilles Filippini > (Closes: #842817). >* Check against Policy 3.9.8. Could you upload this fix to

Bug#846541: h5py: FTBFS against hdf5 1.10 - Fail to detect HDF5 install dir

Source: h5py Version: 2.6.0-1 Severity: serious Justification: FTBFS -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, h5py FTBFS against hdf5-1.10 with: == ERROR: test_force_swmr_mode_off_raises

Bug#842177: transition: hdf5

Gilles Filippini a écrit le 28/11/2016 à 10:05 : > Emilio Pozuelo Monfort a écrit le 27/11/2016 à 23:52 : >> On 27/11/16 23:21, Gilles Filippini wrote: >>> Hi, >>> >>> Emilio Pozuelo Monfort a écrit le 06/11/2016 à 16:20 : >>>>>> Yes, this is

Bug#846196: RM: sikuli -- ROM; replaced by sikulix

Package: ftp.debian.org Severity: normal -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, The sikuli source package is supeseded by sikulix which has now landed into unstable. Thanks, _g. -BEGIN PGP SIGNATURE- iQEcBAEBCAAGBQJYPUhlAAoJEO/obGx//s+DVl8H/2RJxYXtFyhwYUFH3VdSJPHn

Bug#842177: transition: hdf5

Emilio Pozuelo Monfort a écrit le 27/11/2016 à 23:52 : > On 27/11/16 23:21, Gilles Filippini wrote: >> Hi, >> >> Emilio Pozuelo Monfort a écrit le 06/11/2016 à 16:20 : >>>>> Yes, this is looking very good, so I'm acking it. But please don't upload >&g

Bug#842177: transition: hdf5

Hi, Emilio Pozuelo Monfort a écrit le 06/11/2016 à 16:20 : >>> Yes, this is looking very good, so I'm acking it. But please don't upload >>> just >>> yet, I'll give you the go in a few days when things are a bit calmer (there >>> are >>> just too many transitions at the moment). Any news on

Bug#845270: jython: /usr/bin/jython sets broken python.home property

On Tue, 22 Nov 2016 00:03:48 +0100 Gilles Filippini <p...@debian.org> wrote: > Package: jython > Version: 2.5.3-11 > Severity: normal > > -BEGIN PGP SIGNED MESSAGE- > Hash: SHA256 > > Hi, > > /usr/bin/jython should set python.home = '/usr/share/jython

Bug#845360: jython: the default cachedir path should be set at the library intialization step

) unstable; urgency=medium + + * Non-maintainer upload. + * New patch 03-default-cachedir.patch: the Debian default cachedir +path is now set at the library intialization step, so that it works +for every use case + + -- Gilles Filippini <p...@debian.org> Tue, 22 Nov 2016 00:34:43

Bug#845270: jython: /usr/bin/jython sets broken python.home property

Package: jython Version: 2.5.3-11 Severity: normal -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, /usr/bin/jython should set python.home = '/usr/share/jython', but it uses dirname(dirname($0)) instead, which returns '/usr'. This setting comes from #705146, to support virtualenv. But it

Bug#844760: fastqc: Please temporarily drop support for fast5 files

(#842815). +fast5 files can easily be converted to fastq using poretools. + + -- Gilles Filippini <p...@debian.org> Fri, 18 Nov 2016 19:03:15 +0100 + fastqc (0.11.5+dfsg-4) unstable; urgency=low * Team upload. diff --git a/debian/control b/debian/control index 7fa5f02..9cd7223

Bug#842815: closed by Andreas Tille <ti...@debian.org> (Bug#842815: fixed in libsis-jhdf5-java 14.12.6-1)

On Mon, 14 Nov 2016 22:15:18 +0100 Gilles Filippini <p...@debian.org> wrote: > Control: reopen -1 > > Andreas Tille a écrit le 14/11/2016 à 21:15 : > > Hi Gilles, > > > > On Mon, Nov 14, 2016 at 07:32:04PM +0100, Gilles Filippini wrote: > >> Debian Bug

Bug#842815: closed by Andreas Tille <ti...@debian.org> (Bug#842815: fixed in libsis-jhdf5-java 14.12.6-1)

Control: reopen -1 Andreas Tille a écrit le 14/11/2016 à 21:15 : > Hi Gilles, > > On Mon, Nov 14, 2016 at 07:32:04PM +0100, Gilles Filippini wrote: >> Debian Bug Tracking System a écrit le 14/11/2016 à 16:09 : >>> This is an automatic notification regarding your Bug re

Bug#842815: closed by Andreas Tille <ti...@debian.org> (Bug#842815: fixed in libsis-jhdf5-java 14.12.6-1)

Debian Bug Tracking System a écrit le 14/11/2016 à 16:09 : > This is an automatic notification regarding your Bug report > which was filed against the src:libsis-jhdf5-java package: > > #842815: libsis-jhdf5-java: Please support HDF5 1.10 > > It has been closed by Andreas Tille

Bug#843040: c-blosc: diff for NMU version 1.11.1+ds1-2.1

bigendian.patch: fix endianness issue in the bitshuffle +filter (closes: #8430040) + + -- Gilles Filippini <p...@debian.org> Fri, 04 Nov 2016 11:19:43 +0100 + c-blosc (1.11.1+ds1-2) unstable; urgency=medium * add preserve-cflags-from-environment.patch. diff -Nru c-blosc-1.11.1+ds1/

Bug#833457: hdf5: Please enable packaging of libhdf5-openmpi-dev on hppa arch

Control: tags -1 confirmed On Thu, 4 Aug 2016 17:33:58 +0200 Helge Deller wrote: > Package: hdf5 > Version: 1.8.16+docs-8 > Severity: normal > > Can you please re-enable hppa as arch which builds libhdf5-openmpi-dev ? > It breaks building other packages, and openmpi now builds on

Bug#842177: transition: hdf5

Control: block -1 by 843040 842815 Emilio Pozuelo Monfort a écrit le 05/11/2016 à 17:29 : > Control: tags -1 confirmed > > On 04/11/16 14:45, Gilles Filippini wrote: >> Gilles Filippini a écrit le 02/11/2016 à 19:05 : >>> Hi, >>> >>> Good news: every hd

Bug#841959: Problems with your ismrmrd/1.3.2-4.1 NMU

On 2016-11-04 15:50, Ghislain Vaillant wrote: Hi Gilles, On 01/11/16 17:50, Gilles Filippini wrote: Could you give me more insight of the compatibility problem with HDF5 1.10? The most important change in the HDF5 1.10 release is that the hid_t type was changed from 'int' to 'long long' [1

Bug#842177: transition: hdf5

Gilles Filippini a écrit le 02/11/2016 à 19:05 : > Hi, > > Good news: every hdf5 reverse dependency but 8 is now 'binnmu OK'. The > remainder is: > * shogun FTBFS unrelated to hdf5 - not in testing - #809290 > * tessa FTBFS unrelated to hdf5 - not in

Bug#843040: libblosc1: Bitshuffle problems on bigendian architectures

+0100 @@ -1,3 +1,11 @@ +c-blosc (1.11.1+ds1-2.1) unstable; urgency=medium + + * Non-maintainer upload + * New patch bigendian.patch: fix endianness issue in the bitshuffle +filter (closes: #8430040) + + -- Gilles Filippini <p...@debian.org> Fri, 04 Nov 2016 11:19:43 +0100 + c-blosc (1.11

Bug#842177: transition: hdf5

Hi, Good news: every hdf5 reverse dependency but 8 is now 'binnmu OK'. The remainder is: * shogun FTBFS unrelated to hdf5 - not in testing - #809290 * tessa FTBFS unrelated to hdf5 - not in testing - #817690 * aster FTBFS unrelated to hdf5 - not in testing

Bug#842817: yorick-hdf5: FTBFS against HDF5 v1.10

On 2016-11-02 13:46, Thibaut Paumard wrote: Le 02/11/2016 à 10:30, Gilles Filippini a écrit : Yes, this plan (quick hack + temporarily disabling tests on other archs) sounds sensible. Dear Gilles, I uploaded the hacked version(0.8.0-6) to experimental (build-depending on hdf5-dev 1.10

Bug#842817: yorick-hdf5: FTBFS against HDF5 v1.10

Hi Thibaut, On 2016-11-02 09:04, Thibaut Paumard wrote: The "long" type is 64-bit on 64-bit arches. My quick hack works only on these. The proper fix is more involving: I have to create a custom, opaque data type that will hold the actual hid_t. However, overloading the comparison operator for

Bug#842817: yorick-hdf5: FTBFS against HDF5 v1.10

Hi Thibaut, Thibaut Paumard a écrit le 01/11/2016 à 22:51 : > Thanks Gilles. > > This is due to hid_t changing from 32bit to 64bit and mapping that to > the correct integer type in Yorick. > > I managed a quick fix, need a little more time to upload it. Thanks for the foll

Bug#842881: libmpich12: extraneous - and possibly wrong - symbolic link: /usr/lib/libmpich.so.12 -> libmpi.so

Package: libmpich12 Version: 3.2-7 Severity: serious Justification: make other packages FTBFS -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, I've just experienced a weird FTBFS on hdf5 on my box, caused by an extraneous symlink: /usr/lib/libmpich.so.12 -> libmpi.so Steps to reproduce: 1-

Bug#841959: Problems with your ismrmrd/1.3.2-4.1 NMU

Hi Ghislain, Ghislain Vaillant a écrit le 01/11/2016 à 17:13 : > Thanks for dealing with the HDF 1.10 compatibility for ismrmrd whilst I > was away. I did not have the opportunity to look at your patch before > your submission today. That's unfortunate, as there are a couple of > problems with

Bug#842817: yorick-hdf5: FTBFS against HDF5 v1.10

Source: yorick-hdf5 Version: 0.8.0-5 Severity: important -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, yorick-hdf5 FTBFS againt HDF5 v1.10 currently in experimental: dh_auto_test make -j1 check make[1]: Entering directory '/<>' /usr/lib/yorick/bin/yorick -batch check.i

Bug#842815: libsis-jhdf5-java: Please support HDF5 1.10

Source: libsis-jhdf5-java Version: 14.12.1-2 Severity: important -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, libsis-jhdf5-java FTBFS against hdf5-1.10 currently in experimental: === All Total tests run: 309, Failures: 279, Skips: 6

Bug#842177: transition: hdf5

On 2016-10-28 14:12, Gilles Filippini wrote: Status update: insighttoolkit4: hdf5 libmincpatch provided via #842342 And: ants: hdf5 insighttoolkit4OK There is only pytables remaining on the way now Thanks, _g.

Bug#842177: transition: hdf5

On 2016-10-26 19:12, Gilles Filippini wrote: On 2016-10-26 19:03, Sebastiaan Couwenberg wrote: On 10/26/2016 06:46 PM, Gilles Filippini wrote: I've checked the build of every reverse dependencies. These few ones are of concern: * libsis-jhdf5-java : unmaintained upstream - low popcon

Bug#842342: insighttoolkit4: Pease support building against HDF5 1.10

(4.10.1-dfsg1-1.1) unstable; urgency=medium + + * Non-maintainer upload + * New patch to support HDF5 1.10 + + -- Gilles Filippini <p...@debian.org> Fri, 28 Oct 2016 10:12:49 +0200 + insighttoolkit4 (4.10.1-dfsg1-1) unstable; urgency=medium * New upstream version diff -Nru insightto

Bug#842177: transition: hdf5

On 2016-10-26 19:03, Sebastiaan Couwenberg wrote: On 10/26/2016 06:46 PM, Gilles Filippini wrote: I've checked the build of every reverse dependencies. These few ones are of concern: * libsis-jhdf5-java : unmaintained upstream - low popcon * pytables : doesn't support new hdf5 API - popcon

Bug#842177: transition: hdf5

Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi Release Team, I hereby request a transition slot for hdf5 1.10 currently in experimental. This release ships major changes and has

Bug#841954: [Debichem-devel] Bug#841954: HDF5 1.10

On 2016-10-25 12:12, Graham Inggs wrote: Gilles, just to be clear, do you want us to upload chemps2 before or after you upload HDF5 1.10? Hi Graham, Before. Then Release Team handle the necessary binnmus during the transition. Thanks, _g.

Bug#841975: src:scilab: Please support building with HDF5 1.10

@@ +scilab (5.5.2-3) unstable; urgency=medium + + * New patch to support HDF5-1.10 + + -- Gilles Filippini <p...@debian.org> Sat, 22 Oct 2016 15:54:20 +0200 + scilab (5.5.2-2) unstable; urgency=medium * Team upload. diff -Nru scilab-5.5.2/debian/patches/hdf5-1.10-api.patch scilab-5.5.2/

Bug#841972: minc-tools: Please support building against HDF5 1.10

HDF5-1.10. + + -- Gilles Filippini <p...@debian.org> Thu, 20 Oct 2016 20:52:19 +0200 + minc-tools (2.3.00+dfsg-1) unstable; urgency=medium * New upstream release. diff -Nru minc-tools-2.3.00+dfsg/debian/patches/hdf5-1.10-support.patch minc-tools-2.3.00+dfsg/debian/patches/hdf

Bug#841971: gnudatalanguage: Please support building against HDF5 1.10

to support HDF5 1.10 + + -- Gilles Filippini <p...@debian.org> Sat, 23 Jul 2016 18:34:25 +0200 + gnudatalanguage (0.9.6v2-3) unstable; urgency=medium * Another patch for gcc-6 compatibility diff -Nru gnudatalanguage-0.9.6v2/debian/patches/hdf5-1.10.patch gnudatalanguage-0.9.6v2/debian/patche

Bug#841970: libminc: Please support building against HDF5 1.10

@@ +libminc (2.3.00-3.1) unstable; urgency=medium + + * Non-maintainer upload + * New patch to support HDF5 1.10 + + -- Gilles Filippini <p...@debian.org> Thu, 20 Oct 2016 19:31:10 +0200 + libminc (2.3.00-3) unstable; urgency=medium * Wrote watch file diff -Nru libminc-2.3.00/debian/p

Bug#841967: adios: Please support building against HDF5 1.10

/debian/changelog 2016-08-25 22:46:00.0 +0200 +++ adios-1.9.0/debian/changelog 2016-10-22 12:01:21.0 +0200 @@ -1,3 +1,10 @@ +adios (1.9.0-12.1) unstable; urgency=medium + + * Non-maintainer upload + * New patch type-bool-already-defined.patch to fix FTBFS against HDF5 1.10 + + -- Gilles

Bug#841966: xdmf: Please support building against HDF5 1.10

+ + -- Gilles Filippini <p...@debian.org> Sat, 23 Jul 2016 15:06:23 +0200 + xdmf (2.1.dfsg.1-15) unstable; urgency=medium * Fix Typo in depends lib*gz*stream-dev. Closes: 819872 diff -Nru xdmf-2.1.dfsg.1/debian/patches/hdf5-1.10.patch xdmf-2.1.dfsg.1/debian/patches/hdf5-1.10.patch --- xd

Bug#841965: nexus: Please support building against HDF5-1.10

/changelog --- nexus-4.3.2-svn1921/debian/changelog 2015-12-14 00:09:11.0 +0100 +++ nexus-4.3.2-svn1921/debian/changelog 2016-10-21 00:25:42.0 +0200 @@ -1,3 +1,9 @@ +nexus (4.3.2-svn1921-4) unstable; urgency=medium + + * Fix HDF5 1.10 detection + + -- Gilles Filippini <p...@debian.org>

Bug#841964: med-fichier: 3.0.6-10

to fix FTBFS with +HDF5 1.10 + + -- Gilles Filippini <p...@debian.org> Thu, 20 Oct 2016 21:59:50 +0200 + med-fichier (3.0.6-10) unstable; urgency=medium * [f6af4e3] Fix autopkgtest. diff -Nru med-fichier-3.0.6/debian/patches/fix-fid-type-in-medequivinfo.patch med-fichier-3.0.6/debian/p

Bug#841963: libpdl-io-hdf5-perl: Please support building against HDF5-1.10

patch for HDF5 1.10 support + + -- Gilles Filippini <p...@debian.org> Sun, 24 Jul 2016 08:34:49 +0200 + libpdl-io-hdf5-perl (1:0.73-2) unstable; urgency=medium * Team upload. diff -Nru libpdl-io-hdf5-perl-0.73/debian/patches/hdf5-1.10.patch libpdl-io-hdf5-perl-0.73/debian/patches/hdf

Bug#841962: libgpiv: Please support building against HDF5 1.10

-0.6.1/debian/changelog +++ libgpiv-0.6.1/debian/changelog @@ -1,3 +1,10 @@ +libgpiv (0.6.1-4.4) unstable; urgency=medium + + * Non-maintainer upload. + * New patch 04-avoid-bool-keyword.diff to fix FTBFS against HDF5 1.10. + + -- Gilles Filippini <p...@debian.org> Fri, 22 Jul 2016 14:05:02

Bug#841961: nmu: ocaml_4.02.3-7

Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: binnmu -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Please rebuild ocaml against the pie-enabled compiler chain, to fix an FTBFS of scilab package: ocamlopt -o modelicac -I

Bug#841959: ismrmrd: Please support building against HDF5 1.10

/debian/changelog 2016-09-02 12:27:37.0 +0200 +++ ismrmrd-1.3.2/debian/changelog 2016-10-19 00:59:02.0 +0200 @@ -1,3 +1,10 @@ +ismrmrd (1.3.2-4.1) unstable; urgency=medium + + * Non-maintainer upload + * New patch to support HDF5 1.10 + + -- Gilles Filippini <p...@debian.org> W

Bug#841947: [pkg-boost-devel] Bug#841947: libboost-*1.61-dev: Please build static libs with -fPIC

t; > Note that using -fPIC on static libs is against current Debian Policy. You're right. I've just tested building psi4 against a fresh build of boost1.61, and it works. I've submitted a binnmu request accordingly. Thanks, _g. > > On Mon, Oct 24, 2016 at 08:19:13PM +0200, Gilles Filippi

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