Bug#870688: [Debian-science-sagemath] Sage 8.0 status (was Re: Sage 7.6 upload for RC bugfix and GAP 4.8.7 in unstable)

2017-08-05 Thread Ximin Luo
Tobias Hansen: > [..]> > > Hi, > > good work on finding the fpylll issue! Now the main holdup for sage 8.0 > is still cypari2 being stuck in NEW. I wrote on June 21 to > ftpmas...@debian.org and August 2 directly to the ftpmaster who helped > us get sagemath through NEW in time for stretch. Let'

Bug#870698: [Debian-science-sagemath] Possible fix for fplll/fpylll issue with default strategy path

2017-08-07 Thread Ximin Luo
Julien Puydt: > Hi, > > I just pushed to fplll's Debian git repository a tentative 5.1.0-3 which > would fix the recently reported issue with fpylll : I rewrote the patch > for the default strategies path changes. > > I'm a bit at loss on how to check if that really fixes anything : I > tried to

Bug#870698: [Debian-science-sagemath] Possible fix for fplll/fpylll issue with default strategy path

2017-08-07 Thread Ximin Luo
Ximin Luo: > Julien Puydt: >> Hi, >> >> I just pushed to fplll's Debian git repository a tentative 5.1.0-3 which >> would fix the recently reported issue with fpylll : I rewrote the patch >> for the default strategies path changes. >> >> I&#x

Bug#870698: [Debian-science-sagemath] Possible fix for fplll/fpylll issue with default strategy path

2017-08-07 Thread Ximin Luo
Ximin Luo: > Ximin Luo: >> Julien Puydt: >>> Hi, >>> >>> I just pushed to fplll's Debian git repository a tentative 5.1.0-3 which >>> would fix the recently reported issue with fpylll : I rewrote the patch >>> for the default strategies

Bug#869778: [Debian-science-sagemath] Sage 8.0 status (was Re: Sage 7.6 upload for RC bugfix and GAP 4.8.7 in unstable)

2017-08-07 Thread Ximin Luo
Control: block 870688 by 869778 Control: affects 869778 + sagemath Ximin Luo: > Tobias Hansen: >> [..] >> >> The accidental upload of cysignals 1.6.5 to unstable is now a RC bug >> (#870688). Not sure if we should fix it by downgrading cysignals, >> patching sage

Bug#870688: [Debian-science-sagemath] Sage 8.0 status (was Re: Sage 7.6 upload for RC bugfix and GAP 4.8.7 in unstable)

2017-08-07 Thread Ximin Luo
-#869778 Ximin Luo: > [..] > > Hi, I see that libgsl23 was uploaded but who is taking care of the library > transition? It seems that this process was not followed: > https://wiki.debian.org/Teams/ReleaseTeam/Transitions > > The transition tracker detected the li

Bug#870688: [Debian-science-sagemath] Sage 8.0 status (was Re: Sage 7.6 upload for RC bugfix and GAP 4.8.7 in unstable)

2017-08-08 Thread Ximin Luo
Ximin Luo: > -#869778 > > Ximin Luo: >> [..] >> >> Hi, I see that libgsl23 was uploaded but who is taking care of the library >> transition? It seems that this process was not followed: >> https://wiki.debian.org/Teams/ReleaseTeam/Transitions >> &

Bug#871638: [Pkg-rust-maintainers] Bug#871638: Bug#871638: rustc panics when trying to list the target cpus if the current directory does not exist anymore

2017-08-10 Thread Ximin Luo
Control: severity -1 minor Markus Wanner: > Control: tags -1 +confirmed > Control: found -1 1.18.0+dfsg1 > > Hello Alex, > > On 08/10/2017 10:32 AM, Alex Riesen wrote: >> just trying to run the commands below (with or without RUST_BACKTRACE) causes >> rustc to panic. The removal of the directory

Bug#869665: libgit2-dev: please update version in Debian unstable and do a library transition

2017-08-10 Thread Ximin Luo
Russell Sim: > [..] > > Thanks, for doing all that. > > I'm happy to lodge the bugs, I'll wait for the package to clear the new > queue and then send out the emails. > > I have had a look over the package build logs you posted, it appears that > most of them have failed because the package defin

Bug#860116: RFH: cargo -- Rust package manager

2017-04-11 Thread Ximin Luo
Package: wnpp Severity: normal We request assistance with maintaining the cargo package, as well as Rust packaging in general. Firefox's next versions[1] will require rust, but the Debian pkg-rust team is severely short on time to maintain these packages. sylvestre@ and I are just about managing

Bug#860116: [Pkg-rust-maintainers] Bug#860116: RFH: cargo -- Rust package manager

2017-04-11 Thread Ximin Luo
Ximin Luo: > [..] > > Right now, cargo needs to be updated to the next version, there are some open > bugs about it: > > https://bugs.debian.org/cgi-bin/pkgreport.cgi?src=cargo > > I have not yet looked at this package myself but if there are any questions > you &g

Bug#845659: debpatch: New script, "Apply a debdiff to a Debian source package"

2017-04-18 Thread Ximin Luo
James McCoy: > On Thu, Jan 05, 2017 at 04:18:00PM +0000, Ximin Luo wrote: >> Ximin Luo: >>> As part of the Reproducible Builds effort, I've written a tool called >>> debpatch(1), see the branch here: >>> [..] >> >> Hi devscripts team, >>

Bug#860116: [Pkg-rust-maintainers] Bug#860116: RFH: cargo -- Rust package manager

2017-04-19 Thread Ximin Luo
Ximin Luo: > [..] I've made some more process and have pushed 0.17.0 to git. However we're getting build errors and I don't know how to proceed: https://anonscm.debian.org/cgit/pkg-rust/cargo.git/tree/debian/TODO https://anonscm.debian.org/cgit/pkg-rust/cargo.git/tree/d

Bug#860116: [Pkg-rust-maintainers] Bug#860116: RFH: cargo -- Rust package manager

2017-04-20 Thread Ximin Luo
Josh Triplett: > [..] > > ...and looking at git from 20 minutes ago, it looks like you've switched > over to directory registries now. > Thanks for the tip, yes I figured this out by looking at both your dh-cargo code and also the Fedora cargo package. [1] The new version is uploaded to experi

Bug#857068: Bump libgit2 version to upstream release 0.25.1

2017-04-20 Thread Ximin Luo
Source: libgit2 Version: 0.24.5-1 Followup-For: Bug #857068 Hey, this would be useful for the cargo package. (see #860116) At the moment we have to embed libgit2 0.25.1 in the cargo source package, this is not ideal for Debian especially given that there was already a CVE and it's not obvious to

Bug#847172: sagenb-export: FTBFS: UnicodeEncodeError: 'ascii' codec can't encode characters in position 41-42: ordinal not in range(128)

2016-12-07 Thread Ximin Luo
Hi Chris, I can't reproduce this, even when setting the locale to various non-UTF values. How are you building this? X Chris Lamb: > Source: sagenb-export > Version: 2.0-1 > Severity: serious > Justification: fails to build from source > User: reproducible-bui...@lists.alioth.debian.org > Userta

Bug#847192: jupyter-notebook: please make the build reproducible

2016-12-07 Thread Ximin Luo
Control: tags -1 + pending - patch I've fixed this "properly" in git. I think it's not ideal to drop these if we can fix them with minor changes. For future reference, all you need to do for lessc is to: 1. Pass --source-map-basepath=$SOURCE_ROOT_DIR, e.g. https://anonscm.debian.org/cgit/pytho

Bug#847172: sagenb-export: FTBFS: UnicodeEncodeError: 'ascii' codec can't encode characters in position 41-42: ordinal not in range(128)

2016-12-07 Thread Ximin Luo
I think I narrowed it down, could you try the build again with LC_CTYPE="C.UTF-8" and see how it works? X Chris Lamb: > Ximin Luo wrote: > >> I can't reproduce this, even when setting the locale to various non-UTF >> values > > Not sure why you we

Bug#847172: sagenb-export: FTBFS: UnicodeEncodeError: 'ascii' codec can't encode characters in position 41-42: ordinal not in range(128)

2016-12-07 Thread Ximin Luo
will wait for the upstreams to pick the solutions I proposed. In the meantime, I will work around this FTBFS by overriding LC_CTYPE specially for the tests. X Ximin Luo: > I think I narrowed it down, could you try the build again with > LC_CTYPE="C.UTF-8" and see how it works? &

Bug#719330: Will we manage to upgrade jmol

2016-12-08 Thread Ximin Luo
Andreas Tille: > compile: > [mkdir] Created dir: > /build/biojava3-live-3.1.0+dfsg/build/biojava3-structure/classes > [javac] /build/biojava3-live-3.1.0+dfsg/biojava3-structure/build.xml:72: > warning: 'includeantruntime' was not set, defaulting to > build.sysclasspath=last; set to false

Bug#719330: Will we manage to upgrade jmol

2016-12-08 Thread Ximin Luo
Ximin Luo: > Andreas Tille: >> compile: >> [mkdir] Created dir: >> /build/biojava3-live-3.1.0+dfsg/build/biojava3-structure/classes >> [javac] /build/biojava3-live-3.1.0+dfsg/biojava3-structure/build.xml:72: >> warning: 'include

Bug#847468: python-matplotlib-data: need to get an updated matplotlibrc file

2016-12-08 Thread Ximin Luo
Package: python-matplotlib-data Version: 2.0.0~beta4-1 Severity: normal Dear Maintainer, When running sagemath tests, we are getting many errors caused by too many warnings from matplotlib. They look like this: File "src/sage/schemes/elliptic_curves/ell_rational_field.py", line 5038, in sage.sc

Bug#847478: FTBFS: needs to Build-Depends on gperf

2016-12-08 Thread Ximin Luo
Package: glibc Version: 2.24-7 Severity: serious Tags: patch Justification: fails to build from source (but built successfully in the past) Dear Maintainer, whilst trying to build glibc: /usr/bin/install -c -m 644 /tmp/debrepro.uGH5xEsmL1/build/source/build-tree/amd64-libc/gnu/lib-names-64.h /

Bug#719330: Will we manage to upgrade jmol

2016-12-08 Thread Ximin Luo
Andreas Tille: > [..] > > compile: > [mkdir] Created dir: > /build/biojava3-live-3.1.0+dfsg/build/biojava3-structure-gui/classes > [javac] > /build/biojava3-live-3.1.0+dfsg/biojava3-structure-gui/build.xml:73: warning: > 'includeantruntime' was not set, defaulting to build.sysclasspath=

Bug#847468: python-matplotlib-data: need to get an updated matplotlibrc file

2016-12-08 Thread Ximin Luo
Ximin Luo: > When running sagemath tests, we are getting many errors caused by too many > warnings from matplotlib. They look like this: > > File "src/sage/schemes/elliptic_curves/ell_rational_field.p

Bug#846365: debrepro: warn about faketime and allow alternative values

2016-12-08 Thread Ximin Luo
Ximin Luo: > > Thank you! The behaviour specifically for glibc_2.24-5 is like this: > > make[2]: Warning: File 'o-iterator.mk' has modification time 18411205 s in > the future > running CONFIG_SHELL=/bin/bash /bin/bash > /tmp/debrepro.afKzxbwOYw/build/source/co

Bug#847596: locales-all non-deterministically generates either kk_KZ.PT154 or kk_KZ.RK1048 despite declaring support for both

2016-12-09 Thread Ximin Luo
bc-2.24/debian/changelog 2016-11-15 18:03:37.0 + @@ -1,3 +1,10 @@ +glibc (2.24-7.1) UNRELEASED; urgency=medium + + * Non-maintainer upload. + * Try for reproducibility. + + -- Ximin Luo Tue, 15 Nov 2016 18:03:37 + + glibc (2.24-7) unstable; urgency=medium [ Samuel Thibault

Bug#783210: glibc: please make the package build reproducibly

2016-12-09 Thread Ximin Luo
- the upstream folks Aurelien Jarno: > On 2016-06-06 02:48, Ximin Luo wrote: >> On Mon, 19 Oct 2015 10:11:25 +0200 Aurelien Jarno >> wrote: >>> It means that the point 3 (usage of __DATE__ and __TIME__) is the only >>> one left to address in the version curren

Bug#847595: diffoscope: test_icc.py test failures

2016-12-09 Thread Ximin Luo
Control: reassign -1 liblcms2-2 2.8-2 Control: retitle -1 liblcms2-2 causes cd-iccdump to output incorrect locale names Control: affects -1 + colord diffoscope Hello liblcms2-2 maintainer, just reassigning the bug described below. You can reproduce it with $ cd-iccdump e.g. from the diffoscop

Bug#847740: jquery: FTBFS: Error: Cannot find module '/usr/lib/nodejs/r.js'

2016-12-11 Thread Ximin Luo
Hello jquery maintainer, This was partially my "fault", I asked requirejs to fix bug #845158 and they did, but of course other packages in Debian would still be using the old name. Upstream says require('requirejs') http://requirejs.org/docs/node.html Here is the new file list: https://packages

Bug#810264: git-dpm: Please add a flag to sign the tags

2016-12-11 Thread Ximin Luo
Hi, attached is a patch that implements this. I was lazy, the patch is a bit lacking because it forces the tag to be signed and no longer allows unsigned tags. However personally I don't see an issue with that, in the context of Debian anyway. X On Thu, 7 Jan 2016 22:26:42 +0300 Dmitry Shachne

Bug#846515: src:jquery-ui-themes: path of css files changed

2016-12-11 Thread Ximin Luo
Hi Paul, Sorry for the late reply. I'm not subscribed to pkg-javascript@ so I don't notice these things, I only notice via my QA page. (Possibly I should remove myself from Uploaders, since I don't intend to maintain this in the future, as far as I can avoid doing so.) On Thu, 01 Dec 2016 21:0

Bug#844789: [Debian-science-sagemath] GAP: issue related to compressed manual.six: PATCHES: reproducing issue

2016-12-11 Thread Ximin Luo
+Bill and the bug back in Jerome BENOIT: > [..] > > gap-alnuth gap-atlasrep gap-autpgrp gap-character-tables gap-core gap-dev > gap-doc gap-gapdoc gap-libs gap-online-help gap-polycyclic gap-prim-groups > gap-small-groups gap-table-of-marks gap-trans-groups > > Please try with this Debain GAP

Bug#844789: [Debian-science-sagemath] GAP: issue related to compressed manual.six: PATCHES: reproducing issue

2016-12-11 Thread Ximin Luo
Ximin Luo: > [..] > > Arguably GAP should not error out the whole "HELP" command when encountering > one of the "bad" files. But probably either you or Bill know better here, > what the "real" problem is. > I'm also fairly certain that th

Bug#844789: [Debian-science-sagemath] GAP: issue related to compressed manual.six: PATCHES: reproducing issue

2016-12-11 Thread Ximin Luo
Bill Allombert: > On Sun, Dec 11, 2016 at 07:37:00PM +0000, Ximin Luo wrote: >> But the "corrupt" file is not "/usr/share/gap/doc/tut/manual.six.gz", the >> "read" call gave back exactly what was expected. In fact the actual >> "corrupted

Bug#844789: [Debian-science-sagemath] GAP: issue related to compressed manual.six: PATCHES: reproducing issue

2016-12-11 Thread Ximin Luo
Ximin Luo: > [..] > > To demonstrate this in slightly more detail, I have attached two files: > > - sagetest.g - this is directly from Sage, for Bill's reference > > - sagetest.py - this is my attempt to come up with a "minimal test example". Here is a m

Bug#844789: [Debian-science-sagemath] GAP: issue related to compressed manual.six: PATCHES: reproducing issue

2016-12-11 Thread Ximin Luo
Ximin Luo: > Ximin Luo: >> [..] >> >> To demonstrate this in slightly more detail, I have attached two files: >> >> - sagetest.g - this is directly from Sage, for Bill's reference >> >> - sagetest.py - this is my attempt to come up with a "

Bug#844789: [Debian-science-sagemath] GAP: issue related to compressed manual.six: PATCHES: reproducing issue

2016-12-11 Thread Ximin Luo
Bill Allombert: > On Sun, Dec 11, 2016 at 11:41:22PM +0100, Bill Allombert wrote: >> On Sun, Dec 11, 2016 at 10:15:00PM +0000, Ximin Luo wrote: >>> So it seems saving a workspace, even an "empty" one, then loading it >>> again, causes GAP to be unable to parse

Bug#810264: git-dpm: Please add a flag to sign the tags

2016-12-12 Thread Ximin Luo
Attached is an updated version of the patch. This fixes a bug in the previous patch which would cause git-dpm-tag to fail when trying to re-tag the same upstream commit, because the annotated tag is a different object to the commit that it points to. X Ximin Luo: > Hi, attached is a pa

Bug#817236: schroot: no access to pseudo-terminals in new chroots

2016-12-13 Thread Ximin Luo
Package: debootstrap Version: 1.0.87 Followup-For: Bug #817236 (Not CCing people on purpose because this doesn't add to the current thread's discussion:) Just wanted to add for the record (e.g. online readers) that Ansgar's workaround of replacing the current fstab /dev/pts line does works to unb

Bug#848131: libmpich.so.12: cannot open shared object file: No such file or directory

2016-12-14 Thread Ximin Luo
Package: tachyon-bin-nox Version: 0.99~b6+dsx-6 Severity: grave Tags: patch Justification: renders package unusable Dear Maintainer, This package is missing either a direct or indirect dependency libmpich12: (unstable-amd64-sbuild)infinity0:/build/sagemath-fBCYuv/sagemath-7.4$ tachyon-nox tachy

Bug#848131: Acknowledgement (libmpich.so.12: cannot open shared object file: No such file or directory)

2016-12-14 Thread Ximin Luo
Control: reassign -1 libtachyon-mpich-0 Control: affects -1 tachyon-bin-nox Control: affects -1 tachyon-bin-ogl Note that the problem occurs only when you install libtachyon-mpich-0. (For some reason, that is what sbuild chose to satisfy sage's "tachyon" dependency. Probably I should remove my w

Bug#847917: jupyter-notebook: Unhandled error in API request

2016-12-15 Thread Ximin Luo
Control: notfound -1 4.2.3-3 Hi Paride, This is fixed in version 4.2.3-3 of the package, it is caused by empty files in /etc/jupyter/nbconfig/*.json. They should say {} instead. However, I forgot to write logic to overwrite existing empty files that are created by version 4.2.3-2, so simply up

Bug#844789: [Debian-science-sagemath] GAP: issue related to compressed manual.six: PATCHES: reproducing issue

2016-12-16 Thread Ximin Luo
; On Mon, Dec 12, 2016 at 10:19:18PM +0100, Bill Allombert wrote: >>>> On Mon, Dec 12, 2016 at 06:06:37PM +0100, Bill Allombert wrote: >>>>> On Sun, Dec 11, 2016 at 11:15:00PM +, Ximin Luo wrote: >>>>>> Did you remove test.w before trying the tests?

Bug#832565: rustc: don't embed llvm in librustc_llvm

2016-07-26 Thread Ximin Luo
Package: rustc Version: 1.10.0+dfsg1-1 Severity: normal Dear Maintainer, librustc_llvm-xx.so is approx 30MB, taking about half the space of libstd-rust-xx. Upstream tells me that this is due to embedding pretty much all of LLVM. We should explore options to make it instead dynamically link agai

Bug#833300: libgtksourceview2.0-dev: Please depend on libpng-dev

2016-08-02 Thread Ximin Luo
Package: libgtksourceview2.0-dev Version: 2.10.5-2 Severity: important Dear Maintainer, If libpng-dev is not installed, then `pkg-config --exists gtksourceview-2.0` will fail. $ pkg-config --exists gtksourceview-2.0 [..] Looking for package 'libpng16' Looking for package 'libpng16-uninstalled'

Bug#833300: closed by Michael Biebl (Re: Bug#833300: libgtksourceview2.0-dev: Please depend on libpng-dev)

2016-08-02 Thread Ximin Luo
Debian Bug Tracking System: > This is an automatic notification regarding your Bug report > which was filed against the libgtksourceview2.0-dev package: > > #833300: libgtksourceview2.0-dev: Please depend on libpng-dev > > It has been closed by Michael Biebl . > > Their explanation is attached b

Bug#833300: closed by Michael Biebl (Re: Bug#833300: libgtksourceview2.0-dev: Please depend on libpng-dev)

2016-08-03 Thread Ximin Luo
Michael Biebl: > Am 03.08.2016 um 02:24 schrieb Ximin Luo: >> Debian Bug Tracking System: >>> This is an automatic notification regarding your Bug report >>> which was filed against the libgtksourceview2.0-dev package: >>> >>> #833300: libgtks

Bug#833300: closed by Michael Biebl (Re: Bug#833300: libgtksourceview2.0-dev: Please depend on libpng-dev)

2016-08-05 Thread Ximin Luo
Emilio Pozuelo Monfort: > [..] > > The failure indicates that something is missing a dependency on libpng-dev, > but > pkg-config is recursive. So when you do `pkg-config --cflags > gtksourceview-2.0' > it will look for the cflags of required packages, recursively. And the package > that require

Bug#852780: cantor-backend-sage: sagemath is now in Debian, package does not work with it

2017-01-27 Thread Ximin Luo
Package: cantor-backend-sage Version: 4:16.08.3-1 Severity: normal Dear Maintainer, SageMath has been in Debian for about a month now: https://packages.qa.debian.org/s/sagemath.html I just did a quick test and it seems not to work however, it detects the Sage version incorrectly and has troubl

Bug#852780: [Debian-science-sagemath] Bug#852780: cantor-backend-sage: sagemath is now in Debian, package does not work with it

2017-01-27 Thread Ximin Luo
Ximin Luo: > Package: cantor-backend-sage > Version: 4:16.08.3-1 > Severity: normal > > Dear Maintainer, > > SageMath has been in Debian for about a month now: > https://packages.qa.debian.org/s/sagemath.html > > I just did a quick test and it seems not to wor

Bug#852013: Patch to prevent segfaults on signal

2017-01-29 Thread Ximin Luo
Brett Smith: > [..] > > I've also attached a script I used to help reproduce the issue. It > doesn't do so reliably, and it's not totally robust itself, but I found > it more reliable than trying to time timeout or a ^C right. > > [..] Hey Brett, could you also upload the ink*.tar files somewhe

Bug#783975: ITP: giac -- computer algebra system

2017-01-30 Thread Ximin Luo
Package: wnpp Followup-For: Bug #783975 Owner: Ximin Luo Control: retitle -1 RFP: giac -- computer algebra system

Bug#848895: Acknowledgement (Chromium freezes randomly)

2017-02-02 Thread Ximin Luo
Control: affects -1 + vlc mpv gnome-mpv baka-mplayer (I am using a personal package of baka-mplayer that I built for #813591 but it's doesn't follow Debian policy in some areas so I can't upload it yet.) Ximin Luo: > [..] > > A shorter workaround: > > $ pkill -

Bug#848895: Chromium freezes randomly

2017-02-02 Thread Ximin Luo
Ximin Luo: > Control: affects -1 + vlc mpv gnome-mpv baka-mplayer > > (I am using a personal package of baka-mplayer that I built for #813591 but > it's doesn't follow Debian policy in some areas so I can't upload it yet.) > > Ximin Luo: >> [..] >&

Bug#848246: [Debian-science-sagemath] Fwd: sagemath_7.4-1_amd64.changes is NEW

2016-12-18 Thread Ximin Luo
Control: retitle -1 Document SYMPOW_CACHEDIR better and automatically try to create it Jerome BENOIT: > Hello SymPow enthusiasts, > > On 17/12/16 15:46, Jerome BENOIT wrote: >>> It would be good if sympow could automatically create SYMPOW_CACHEDIR if it doesn't exist. Otherwise, I would hav

Bug#783210: glibc: please make the package build reproducibly

2016-12-19 Thread Ximin Luo
Aurelien Jarno: > [..] > > It would be nice to have an explanation why the changes from your patch > are needed. See my comments below. > > >> diff -Nru glibc-2.24/debian/rules glibc-2.24/debian/rules >> --- glibc-2.24/debian/rules 2016-11-25 21:59:04.0 + >> +++ glibc-2.24/debian/ru

Bug#842348: Patch: Let linspace accept input that has an array_interface...

2016-12-19 Thread Ximin Luo
Hello Sandro, I noticed you uploaded numpy 1.12 recently. Could you consider backporting this patch to that, and uploading a new version? This patch is the last patch that fixes a good number of failures in Sage's testsuite. If it were applied it would bring the number of failures down from ~5

Bug#848705: dpkg-dev: have dpkg-genbuildinfo add extra information based on DEB_BUILD_OPTIONS=buildinfo=xxx

2016-12-19 Thread Ximin Luo
Package: dpkg-dev Version: 1.18.15 Severity: wishlist Dear Maintainer, One of the purposes of buildinfo files is to aid in debugging, e.g. to be able to see what particular build-environment variation (between two builds) may have caused a failure to reproduce some binary hashes. This goal sugges

Bug#848768: biojava4-live: FTBFS: [javac] /<>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/core/QuatSymmetryDetector.java:27: error: package o

2016-12-20 Thread Ximin Luo
Hey all, Indeed, jmol in unstable is still version 12. If biojava4-live 4.2.4 is supposed to work with 14, that would be the problem. I will upload jmol 14 to unstable in the next 2-3 hours, you can try it again with that. Perhaps it would already solve this FTBFS. X olivier sallou: > Le mar.

Bug#839643: [Pkg-rust-maintainers] Bug#839643: src:rustc: ppc64el is missing

2016-12-23 Thread Ximin Luo
Erwan Prioul: > Hi, > I've noticed big progress upstream. I'm able to compile on ppc64el \o/ > What would be the next steps to have it packaged? First, I guess, is to have > a new tag/version upstream, but then? > Hi Erwan, see https://anonscm.debian.org/cgit/pkg-rust/rust.git/tree/debian/READM

Bug#848403: diffoscope: FTBFS randomly (Fatal Python error: deallocating None)

2016-12-24 Thread Ximin Luo
I still haven't managed to reproduce this myself but I'll just note for the record we have seen this on jenkins before: https://jenkins.debian.net/job/reproducible_diffoscope_from_git_master/63/console Santiago Vila: > Package: src:diffoscope > Version: 63 > Severity: serious > > Hello folks. >

Bug#849204: jupyter-nbextension-jupyter-js-widgets: fails to configure

2016-12-24 Thread Ximin Luo
Control: reassign -1 jupyter-notebook 4.2.3-2 Control: severity -1 normal Control: close -1 4.2.3-3 Control: merge -1 847917 Hi Norbert, this is due to a bug in jupyter-notebook 4.2.3-2. You can fix it locally by removing any empty files matching /etc/jupyter/nbconfig/*.json, then reinstalling/r

Bug#848403: diffoscope: FTBFS randomly (Fatal Python error: deallocating None)

2016-12-24 Thread Ximin Luo
Chris Lamb: > Ximin Luo wrote: > >> I still haven't managed to reproduce this myself but I'll just note >> for the record we have seen this on jenkins before > > My guess is that one of the third-party Python extension modules that > we import does not corre

Bug#849150: sagemath: FTBFS on arm64 and ppc64el: cannot allocate memory building docs

2016-12-25 Thread Ximin Luo
Hi, this does not look like a simple out-of-memory, but a bug involving libgomp. A quick Google search of the error message shows that there was some issue involving libgomp, dlopen and GCC years ago, but it's unclear if this is issue here is related. The error occurs right when the docbuild st

Bug#849152: sagemath: FTBFS on i386: many tests fail

2016-12-25 Thread Ximin Luo
On Thu, 22 Dec 2016 18:59:24 -0500 "Aaron M. Ucko" wrote: > Source: sagemath > Version: 7.4-3 > Severity: important > Justification: fails to build from source > > The i386 build of sagemath failed with many test suite errors > (including some outright crashes), as detailed at > > https://buildd

Bug#849414: Crashes immediately on armhf with "Segmentation fault"

2016-12-26 Thread Ximin Luo
Package: motion Version: 4.0-1 Severity: normal Forwarded Message Subject: Bug report for motion: Crashes immediately with "Segmentation fault" Date: Mon, 26 Dec 2016 19:04:19 +0100 From: Alek To: Ximin Luo Hi, sorry for not using reportbug to report the bug, but

Bug#719330: [Debian-science-sagemath] Jmol transition?

2016-10-27 Thread Ximin Luo
Progress report: I've done most of the packaging for java2script and jmol, here: https://github.com/infinity0/java2script https://github.com/infinity0/jmol The current version of Jmol actually has *less* dependencies than the old one in Debian. It looks like they're shifting the priority onto JS

Bug#837359: ocaml: FTBFS on -fPIE binNMU on armhf - test failure

2016-11-01 Thread Ximin Luo
Adrian Bunk: > ... testing 'quicksort2':/usr/bin/ld: quicksort2.o: relocation > R_ARM_THM_MOVW_ABS_NC against `cmp' can not be used when making a shared > object; recompile with -fPIC > quicksort2.o: error adding symbols: Bad value > collect2: error: ld returned 1 exit status > => failed > ...

Bug#837359: ocaml: FTBFS on -fPIE binNMU on armhf - test failure

2016-11-01 Thread Ximin Luo
Ximin Luo: > Adrian Bunk: >> ... testing 'quicksort2':/usr/bin/ld: quicksort2.o: relocation >> R_ARM_THM_MOVW_ABS_NC against `cmp' can not be used when making a shared >> object; recompile with -fPIC >> quicksort2.o: error adding symbols: Bad value >

Bug#837359: ocaml: FTBFS on -fPIE binNMU on armhf - test failure

2016-11-01 Thread Ximin Luo
Ximin Luo: > Ximin Luo: >> >> It's possible OCaml itself is to blame: >> >> asmcomp/arm/emit.mlp: >> if nh = 0l then begin >> ` movw{emit_reg dst}, #{emit_int32 nl}\n`; 1 >> end else if Int32.logand nl 0xffl = n

Bug#842956: llvm-3.9-dev: Please backport 279980 since rustc 1.12.1 needs it

2016-11-02 Thread Ximin Luo
Package: llvm-3.9-dev Version: 1:3.9-4 Severity: important Tags: patch Dear Maintainer, Please apply the patch here: https://reviews.llvm.org/rL279980 Otherwise issue-36023.rs in rustc 1.12.1 will compile but segfault when run: https://github.com/rust-lang/rust/issues/36023 https://llvm.org/bugs

Bug#842956: llvm-3.9-dev: Please backport 279980 since rustc 1.12.1 needs it

2016-11-03 Thread Ximin Luo
Ximin Luo: > [..] > > rust.git$ git format-patch 4105790 # 4105790 and earlier are already applied > to our LLVM > 0001-Add-some-Rust-allocation-functions-to-TargetLibraryI.patch > 0002-Add-support-for-i1-compare-operations-to-X86-FastISe.patch > 0003-Disable-the-PassInf

Bug#842956: llvm-3.9-dev: Please backport 279980 since rustc 1.12.1 needs it

2016-11-03 Thread Ximin Luo
Sylvestre Ledru: > Le 03/11/2016 à 18:04, Ximin Luo a écrit : >> Ximin Luo: >>> [..] >>> >>> rust.git$ git format-patch 4105790 # 4105790 and earlier are already >>> applied to our LLVM >>> 0001-Add-some-Rust-allocation-functions-to-Ta

Bug#842956: llvm-3.9-dev: Please backport 279980 since rustc 1.12.1 needs it

2016-11-04 Thread Ximin Luo
Sylvestre Ledru: > Le 03/11/2016 à 18:52, Ximin Luo a écrit : >> you agree it's OK to backport them if they're already applied to trunk? > no, sorry :) > LLVM r279980 attached as patch, I built this and confirmed it can be used to successfully build+test our 1.12.1 rust

Bug#783210: [PATCH] nscd_stat.c: make the build reproducible

2016-11-04 Thread Ximin Luo
Mike Frysinger: > On 28 Jul 2016 15:15, Florian Weimer wrote: >> On 03/09/2016 05:30 PM, Mike Frysinger wrote: >>> would it be so terrible to properly marshall this data ? >> >> Ximin Luo and I discussed this and I wonder if it is possible to read >> out the

Bug#783210: [PATCH] nscd_stat.c: make the build reproducible

2016-11-04 Thread Ximin Luo
Ximin Luo: > Mike Frysinger: >> On 28 Jul 2016 15:15, Florian Weimer wrote: >>> On 03/09/2016 05:30 PM, Mike Frysinger wrote: >>>> would it be so terrible to properly marshall this data ? >>> >>> Ximin Luo and I discussed this and I wonder if it is

Bug#833850: dpkg-dev: add per-architecture optimisation flags to dpkg-buildflags

2016-11-05 Thread Ximin Luo
Holger Levsen: > Hi Ximin, > > On Tue, Aug 09, 2016 at 02:08:45PM +0200, Ximin Luo wrote: >> Many software packages (e.g. see #833846) like to set optimisation flags >> based >> on autodetecting CPU features of the build machine. > > do you really say/think that

Bug#764007: (no subject)

2016-11-05 Thread Ximin Luo
Ximin Luo: > On 31/07/15 12:23, Patrick Schleizer wrote: >> What's the status of this? > > Waiting on https://trac.torproject.org/projects/tor/ticket/12716 > > Help with it would be appreciated. :) As soon as that is merged, I will > upload meek. > > I

Bug#844784: ITP: d3-format -- Formatting numbers for human consumption

2016-11-18 Thread Ximin Luo
Package: wnpp Severity: wishlist Owner: Ximin Luo * Package name: d3-format Version : 1.0.2 Upstream Author : 2010-2015 Mike Bostock * URL : https://github.com/d3/d3-format * License : BSD Programming Lang: JS Description : Formatting numbers for

Bug#817277: phantomjs: PhantomJS fails to run headless

2016-11-19 Thread Ximin Luo
There is more information here: https://github.com/ariya/phantomjs/issues/14240 "If you compiled PhantomJS with X11 enabled, it will use XCB (X11) platform in runtime, which is not supported in headless environment. Instead of that you must build PhantomJS without X11 headers (dev packages inst

Bug#845063: ITP: html2canvas -- Take screenshots of webpages directly in the browser

2016-11-19 Thread Ximin Luo
Package: wnpp Severity: wishlist Owner: Ximin Luo * Package name: html2canvas Version : 0.5.0~beta4 Upstream Author : 2012-2016 Niklas von Hertzen * URL : https://github.com/niklasvh/html2canvas * License : Expat Programming Lang: JS Description

Bug#779804: Updated maxima-ecl debdiff for maxima 5.38.1-2

2016-11-19 Thread Ximin Luo
Camm Maguire: > [..] > > It is a pity that as sage offers a viable alternative, it has > nevertheless been passed over. I hear concerns about human resources, > but then when I offer to help make it work and request a status report > all I get is predetermined conclusions to not make it work. >

Bug#845158: node-requirejs should provide r.js as "requirejs.js"

2016-11-20 Thread Ximin Luo
Package: node-requirejs Version: 2.2.0-1 Severity: important Tags: patch Dear Maintainer, require("requirejs") is used by most javascript projects but the Debian node-requirejs package installs this as /usr/lib/nodejs/r.js. So I have to patch my packages to say require("r") instead. Please fix th

Bug#845659: debpatch: New script, "Apply a debdiff to a Debian source package"

2016-11-25 Thread Ximin Luo
Package: devscripts Version: 2.16.10 Severity: wishlist Tags: patch Dear Maintainer, As part of the Reproducible Builds effort, I've written a tool called debpatch(1), see the branch here: https://anonscm.debian.org/cgit/collab-maint/devscripts.git/commit/?h=pu/debpatch To quote the README entr

Bug#845748: libjs-bootswatch: please symlink /usr/share/javascript/bootstrap/fonts to /usr/share/javascript/bootswatch/fonts

2016-11-26 Thread Ximin Luo
Package: libjs-bootswatch Version: 3.3.5+2+dfsg1-1 Severity: normal Tags: patch Dear Maintainer, grep -Ri "url('../fonts/glyphicons" /usr/share/javascript/bootswatch/ | less turns up lots of results, however that path does not exist. This causes errors in the browser like "GET [$path] net::ERR_

Bug#846164: dpkg-dev: Have dpkg-genchanges support a source+buildinfo-only upload

2016-11-28 Thread Ximin Luo
Package: dpkg-dev Version: 1.18.15 Severity: wishlist Dear Maintainer, Currently one can do $ dpkg-buildpackage --changes-option=-S to do a binary build locally, but only upload the source package so that buildds build on all arches. Note that this command *does* generate a buildinfo file, bu

Bug#836520: reprotest: contains a copy of the autopkgtest code

2016-11-29 Thread Ximin Luo
Hi Martin, I'm looking into de-duplicating reprotest's embedded copies of autopkgtest code. In #833407 you said "Using the Python API (adt_testbed.py) is a lot easier and more robust than talking to the backend servers directly", but adt_testbed.py is currently not available as a public Python

Bug#846164: dpkg-dev: Have dpkg-genchanges support a source+buildinfo-only upload

2016-11-30 Thread Ximin Luo
Guillem Jover: > On Mon, 2016-11-28 at 22:00:32 +0100, Ximin Luo wrote: >> It would be good to be able [..] >> to do a binary build locally, but only upload the source package >> *and* the buildinfo file. > > This was the intention from the beginning. But when I mentio

Bug#846475: nimble does not work

2016-12-01 Thread Ximin Luo
Hi Russel, It works for me, after running `nimble refresh`, with the latest vesrion 0.15.2-2. Could you try to get some more debugging information from your end? If all else fails, you can try running it through strace(1) and analyzing the huge output from that for anything that looks relevant

Bug#833284: reprotest: please add a "buildpath" variation to reprotest

2016-12-01 Thread Ximin Luo
Control: retitle -1 add the ability to disable buildpath variations reprotest actually already builds in /tmp/autopkgtest.*/control vs experimental, but I'll add an option to disable this variation. When it is disabled, parallel builds would be impossible to make work (with most virtual servers

Bug#846643: ITP: sagenb -- The standalone Sage Notebook

2016-12-02 Thread Ximin Luo
Package: wnpp Severity: wishlist Owner: Ximin Luo * Package name: sagenb Version : 0.13 Upstream Author : SageNB contributors * URL : https://github.com/sagemath/sagenb * License : GPL-3+ Programming Lang: Python, JS Description : The standalone Sage

Bug#739300: [Python-modules-team] Bug#739300: dh_sphinxdoc: Please replace MathJax.js with links to the packaged libjs-mathjax

2016-12-02 Thread Ximin Luo
On Mon, 11 Apr 2016 13:30:40 +0200 Dmitry Shachnev wrote: > Hi Sandro, > > On Sat, Apr 09, 2016 at 01:27:03PM +0100, Sandro Tosi wrote: > > Is there any progress on this? I just got bitten by it: > > > > E: python-cycler-doc: privacy-breach-uses-embedded-file > > usr/share/doc/python-cycler-doc/h

Bug#739300: [Python-modules-team] Bug#739300: dh_sphinxdoc: Please replace MathJax.js with links to the packaged libjs-mathjax

2016-12-02 Thread Ximin Luo
Ximin Luo: > On Mon, 11 Apr 2016 13:30:40 +0200 Dmitry Shachnev wrote: >> Hi Sandro, >> >> On Sat, Apr 09, 2016 at 01:27:03PM +0100, Sandro Tosi wrote: >>> Is there any progress on this? I just got bitten by it: >>> >>> E: python-cycler-doc: pri

Bug#719330: Will we manage to upgrade jmol

2016-12-04 Thread Ximin Luo
Ximin Luo: > Ximin Luo: >> Andreas Tille: >>> Hi, >>> >>> On Tue, Nov 22, 2016 at 01:40:44PM +0100, Michael Banck wrote: >>>> >>>> [...] >>>> >>>>> [1] https://anonscm.debian.org/git/debichem/packages/jmol.git

Bug#719330: Will we manage to upgrade jmol

2016-12-05 Thread Ximin Luo
Andreas Tille: > Hi Ximin, > > at first thanks a lot for your effort to upgrade Jmol which is highly > appreciated. > > On Sun, Dec 04, 2016 at 09:33:00PM +, Ximin Luo wrote: >>> >>> Hi all, I just updated Jmol in the above git repo. You can build i

Bug#844789: [Debian-science-sagemath] GAP: issue related to compressed manual.six: PATCHES

2016-12-06 Thread Ximin Luo
Bill Allombert: > On Fri, Dec 02, 2016 at 05:39:24AM +, Jerome BENOIT wrote: >> -BEGIN PGP SIGNED MESSAGE- >> Hash: SHA512 >> >> Hello All, >> >> finally I figured out a way to implement compression (gz) with the help >> of the zlib library rather than through gzip pipes. So snow Sage n

Bug#844789: [Debian-science-sagemath] GAP: issue related to compressed manual.six: PATCHES

2016-12-06 Thread Ximin Luo
Bill Allombert: > On Tue, Dec 06, 2016 at 01:01:00PM +0000, Ximin Luo wrote: >> Bill Allombert: >> Hi all, >> >> Sorry I only just briefly scanned through the thread now. However I >> found this post relating to gzip, pipes and python: >> >> https

Bug#844789: [Debian-science-sagemath] GAP: issue related to compressed manual.six: PATCHES

2016-12-06 Thread Ximin Luo
Jerome BENOIT: > Hello Bill, thanks for your comment. > > On 06/12/16 10:44, Bill Allombert wrote: >> This is too intrusive and does not solve any issue with gap. > > It is intrusive, I am agree. But it also solve the issue. > I do not think that a mature software may use piping. > Why do you

Bug#844789: [Debian-science-sagemath] GAP: issue related to compressed manual.six: PATCHES

2016-12-06 Thread Ximin Luo
Ximin Luo: > Bill Allombert: >> On Tue, Dec 06, 2016 at 01:01:00PM +0000, Ximin Luo wrote: >>> Bill Allombert: >>> Hi all, >>> >>> Sorry I only just briefly scanned through the thread now. However I >>> found this post relating to gzip, pipes

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