Bug#932797: [Pkg-javascript-devel] Bug#932797: Bug#932797: node-gyp should be installed in /usr/share/nodejs/node-gyp

Hi > https://salsa.debian.org/gi-boi-guest/node-node-sass/blob/master/scripts/build.js#L59 > replace > require.resolve(path.join('node-gyp', 'bin', 'node-gyp.js')) > by > 'node-gyp' On doing that, I'm again getting the same error message which was reported earlier. Are there other files which

Bug#932797: [Pkg-javascript-devel] Bug#932797: Bug#932797: Bug#932797: node-gyp should be installed in /usr/share/nodejs/node-gyp

path to node-gyp.js but that doesn't seem to work out too. Please let me know if there are other files that I should make changes to. Regards Nilesh On Tue, 23 Jul 2019, 23:33 Jérémy Lal, wrote: > > > Le mar. 23 juil. 2019 à 17:18, Nilesh Patra a > écrit : > >> Hi >>

Bug#932797: [Pkg-javascript-devel] Bug#932797: Bug#932797: Bug#932797: Bug#932797: node-gyp should be installed in /usr/share/nodejs/node-gyp

This in rules works (workaround) > > export NODE_PATH := ${CURDIR}:/usr/share > Thanks! This works and I was able to build node-node-sass. Regards Nilesh

Bug#932956: ITP: node-node-sass -- Wrapper around libsass

Package: wnpp Severity: wishlist Owner: Nilesh X-Debbugs-CC: debian-de...@lists.debian.org * Package name: node-node-sass Version : 4.12.0 Upstream Author : Andrew Nesbitt ( http://andrew.github.com) * URL : https://github.com/sass/node-sass * License : Expat

Bug#934665: upload grpc and protobuf to unstable

But the latest available package version is 3.10.1-1 and the rebuild > should be done with that. > Rebuilt with the new version, these are the newer failing depends: anbox, astroidmail, bookkeeper, collectd, containerd, cubemap,docker.io, etcd, gazebo, go-dep, gobgp, ignition-transport,

Bug#934665: upload grpc and protobuf to unstable

On Sun, 17 Nov 2019, 23:44 Pirate Praveen, wrote: > So as summary, the packages that might be failed due to protobuf change are > > cubemap, ignition-transport (with ignition-msgs might fix gazebo), ola, > osmosis > > I will file bugs against these. > Thanks a lot! These packages should

Bug#782922: Help for issues with lazyarray needed

On Thu, 5 Mar 2020, 14:16 Andreas Tille, wrote: > Control: tags -1 pending > > Hi, > > I have updated lazyarray in Git[1] (by moving it to Debian Science > team). The old package was lagging way behind upstream and a Python3 > port is available by upstream so I just create the python3-lazyarray

Bug#950666: [Pkg-javascript-devel] Bug#950666: node-terser FTBFS: test failures

Hi On Wed, 05 Feb 2020 13:41:37 +0100 Jonas Smedegaard wrote: > control: tags -1 +confirmed > control: retitle -1 node-terser FTBFS: fails 7 tests in "bin/uglifyjs" and "bin/uglifyjs with input file globs" > > Quoting Adrian Bunk (2020-02-04 16:29:34) > > Source: node-terser > > Version:

Bug#946979: lists.debian.org: Have a mailing list archive for the JavaScript team.

On Thu, 19 Dec 2019 00:35:18 +0530 Utkarsh Gupta wrote: > Package: lists.debian.org > Severity: wishlist > > Hiya, > > The JavaScript team is still using the old archive (that is, > alioth-lists.debian.net) which gets very messy and noisy since there are > a lot (hundres each month) of

Bug#956417: ITP: parasail: Pairwise Sequence Alignment Library

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: parasail Version : 2.4.1 Upstream Author : Jeff Daily * URL : https://github.com/jeffdaily/parasail <https://github.com/knsv/mermaid> * L

Bug#940359: RFA: golang-github-glycerine-go-unsnap-stream

Hi, On Sun, 5 Apr 2020, 02:37 Alexandre Viau, wrote: > > On 2020-03-21 6:54 a.m., Nilesh wrote: > > I would like maintaining the package, shall keep it updated. > > Great ! > > > For Now, I have added in my name, along, that should work well. > > If you really don't want your name in d/control

Bug#951634: Broken package in testing repository

Hi Alexander, Hugo, Graham On Wed, 25 Mar 2020, 21:45 Alexander van der Meij, < vandermeij.t...@gmail.com> wrote: > > > > Hi Debian Science team, > > As described in bug 951634 > , Debian is > currently distributing a broken development

Bug#954500: Droping pyqi which seemed to be needed for qiime1 only (Was: Bug#954500: pyqi: FTBFS: dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2)

Hi On Mon, 30 Mar 2020, 17:12 Andreas Tille, wrote: > Hi, > > I fixed the actual issue in Git but got a new error: > > > ... >dh_auto_test -O--buildsystem=pybuild > I: pybuild base:217: cd > /build/pyqi-0.3.2+dfsg/.pybuild/cpython3_3.8/build; python3.8 -m unittest > discover -v >

Bug#958840: kmer: autopkgtest regression: No module named 'localAlignerInterface'

On Mon, 18 May 2020 at 12:39, Andreas Tille wrote: > > I've merged this and tried a test build including running autopkgtest in > my pbuilder environment. Unfortunately the latter test is now failing with > > ... > autopkgtest [06:48:10]: test atac-unit-test: [--- >

Bug#954324: ITP: node-mermaid -- Javascript based diagramming and charting tool

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: node-mermaid Version : 8.4.8 Upstream Author : Knut Sveidqvist * URL : https://github.com/knsv/mermaid * License : Expat Programming Lang

Bug#940369: RFA: golang-github-influxdata-influxql

Hi, On Sun, 15 Sep 2019 18:02:20 -0400 Alexandre Viau wrote: > Package: wnpp > Severity: normal > > Hello! > > I'd like to find new maintainers for some of my packages because I have > had less time for Debian. I'd like to focus the small amount of time > that I have for Debian on other things.

Bug#940374: RFA: golang-github-jackpal-gateway

Hi, On Sun, 15 Sep 2019 18:08:48 -0400 Alexandre Viau wrote: > Package: wnpp > Severity: normal > > Hello! > > I'd like to find new maintainers for some of my packages because I have > had less time for Debian. I'd like to focus the small amount of time > that I have for Debian on other things.

Bug#961399: seaview: autopkgtest regression: gzip: *.gz: No such file or directory

On Sun, 24 May 2020, 19:06 Andreas Tille, wrote: > On Sun, May 24, 2020 at 08:02:56AM +0200, Paul Gevers wrote: > > gzip: *.gz: No such file or directory > > I've fixed this one but the test has changed and seems to require a > running X server. Either this can be changed via command line

Bug#969423: ITP: h5sparse: Scipy sparse matrix in HDF5

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: h5sparse Version : 0.1.0-1 Upstream Author : Appier Inc * URL : https://github.com/appier/h5sparse <https://github.com/knsv/mermaid> * L

Bug#970157: ITP: seriation --- Finds a suitable linear order for a set of objects

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: seriation Version : 0.1+git20200810 Upstream Author : Alexandre Amory * URL : https://github.com/amamory/seriation * License : Expat Programming

Bug#970385: src:swissknife: Please provide autopkgtest

Source: swissknife Version: 1.75-2 Severity: wishlist Tags: newcomer Dear Maintainer, Please provide autopkgtest for this package. -- System Information: Debian Release: bullseye/sid   APT prefers testing   APT policy: (500, 'testing') Architecture: amd64 (x86_64) Kernel: Linux 5.7.0-2-amd64

Bug#970404: shovill: Please provide autopkgtest

Package: shovill Severity: wishlist X-Debbugs-Cc: npatra...@gmail.com Dear Maintainer, Please provide autopkgtest for this package. This also doesn't work properly at the moment and needs minor patching for the same. -- System Information: Debian Release: bullseye/sid   APT prefers testing  

Bug#970309: src:python-loompy: Please provide autopkgtest

Source: python-loompy Version: 3.0.6+dfsg-2 Severity: wishlist Tags: newcomer Dear Maintainer, Please provide autopkgtest for this package. -- System Information: Debian Release: bullseye/sid   APT prefers testing   APT policy: (500, 'testing') Architecture: amd64 (x86_64) Kernel: Linux

Bug#970312: src:intake: Please provide autopkgtest

Source: intake Version: 0.6.0-3 Severity: wishlist Tags: newcomer Dear Maintainer, Please provide autopkgtest for this package. -- System Information: Debian Release: bullseye/sid   APT prefers testing   APT policy: (500, 'testing') Architecture: amd64 (x86_64) Kernel: Linux 5.7.0-2-amd64

Bug#970301: phybin: Please provide autopkgtest

Package: phybin Severity: wishlist X-Debbugs-Cc: npatra...@gmail.com Tags: newcomer Dear Maintainer, Please provide autopkgtest for this package. -- System Information: Debian Release: bullseye/sid   APT prefers testing   APT policy: (500, 'testing') Architecture: amd64 (x86_64) Kernel: Linux

Bug#970238: ITP: survivor -- Tool set for simulating/evaluating SVs

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: survivor Version : 1.0.6-1 Upstream Author : Fritz Sedlazeck * URL : https://github.com/fritzsedlazeck/SURVIVOR * License : Expat Programming

Bug#969743: ITP: svim: Structural variant caller for long sequencing reads

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: svim Version : 1.4.1+ds-1 Upstream Author : David Heller * URL : https://github.com/eldariont/svim/ <https://github.com/knsv/mermaid> * L

Bug#920545: [RFS] python-intervaltree-bio

Hi, I've attempted to fix: #920545 which is about failing autopkgtests for python-intervaltree-bio. It seems to pass on my chroot and I've pushed the corresponding changes to the team repo here[1]. It'd be great if someone could try testing my changes once - and either sponsor or grant me access

Bug#971148: umap-learn: FTBFS: unsatisfiable build-dependency: python3-llvmlite (< 0.34) but 0.34.0-1 is to be installed

I suppose this FTBFS is due to numba[1] instead of umap-learn. Hence, this would as well FTBFS. It might be a better idea to close this bug and open a bug report against numba instead, so that umap-learn migrates to testing after the bug is fixed in numba, w/o having to close this bug manually.

Bug#961591: [RFS] r-bioc-graph

On Wed, 27 May 2020, 23:28 Dylan Aïssi, wrote: > Hi Nilesh, > > Le mer. 27 mai 2020 à 19:36, Nilesh Patra a écrit : > > > > Hi, > > Currently r-bioc-graph has failing tests, and has RC bug - #961591 filed > against this. > > I have fixed this and pushe

Bug#961591: [RFS] r-bioc-graph

Hi, Currently r-bioc-graph has failing tests, and has RC bug - #961591 filed against this. I have fixed this and pushed my changes to the team repo here[1]. Need review and sponsorship. [1]: https://salsa.debian.org/r-pkg-team/r-bioc-graph

Bug#961591: [RFS] r-bioc-graph

On Thu, 28 May 2020, 01:43 Dylan Aïssi, wrote: > Hi, > > Le mer. 27 mai 2020 à 20:04, Nilesh Patra a écrit : > > > > The second test (needing the library) failed on gitlab-ci, w/o adding > r-cran-xml and r-cran-runit, possible because this doesn't pick up dep

Bug#961494: bowtie2: please make the build reproducible

On Mon, 25 May 2020 at 20:10, Andreas Tille wrote: > Hi Chris, > > On Mon, May 25, 2020 at 10:49:28AM +0100, Chris Lamb wrote: > > This should have read: > > > > Whilst you do patch out -fdebug-prefix-map in > > debian/patches/reproducible.patch, you also need to filter > >

Bug#961499: [RFS] r-cran-sjplot and r-cran-sjmisc

Hi On Tue, 26 May 2020, 13:26 Andreas Tille, wrote: > Hi Nilesh, > > same as for r-cran-sjplot: In commit d2c969cc you move a file out of > help system to doc and I'm not convinced that this is not dangerous. > Ahh, righty! I didn't realise the help system thing while moving it, and this was

Bug#936798: Please port KisSplice to Python3 (Was: Bug#936798: kissplice: Python2 removal in sid/bullseye)

Hi, On Fri, 29 May 2020, 01:08 Andreas Tille, wrote: > Hi Moritz, > > On Thu, May 28, 2020 at 08:48:41PM +0200, Moritz Mühlenhoff wrote: > > > > JFTR, this is now fixed upstream in 2.5.0 and later: > > http://kissplice.prabi.fr/download/: > > > > -- > >

Bug#970447: ITP: pinfish -- Collection of tools to annotate genomes using long read transcriptomics data

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: pinfish Version : 0.1.0+ds-1 Upstream Author : Oxford Nanopore Technologies Ltd. * URL : https://github.com/nanoporetech/pinfish * License : MPL

Bug#970550: [Pkg-javascript-devel] Bug#970550: replacing browserify with webpack or rollup - need help

Hi, On Sun, 20 Sep 2020 at 15:18, Pirate Praveen wrote: > Control: tags -1 help > > On Sun, Sep 20, 2020 at 14:44, Pirate Praveen > wrote: > > The warning now changes to, > > > > (!) Missing shims for Node.js built-ins > > Creating a browser bundle that depends on 'path', 'url' and 'os'. You >

Bug#970462: [RFS] Bug#970462: sweed: autopkgtest arm64 failure

Hi, On Sun, 20 Sep 2020 at 20:34, Étienne Mollier wrote: > Control: tags -1 pending > > Greetings, > > I tried to investigate the issue of running SweeD autopkgtests > on arm64. It turned out to be caused by the assumption that the > "char" type was "signed" by default, while it is "unsigned"

Bug#972757: ITP: golang-github-smallfish-simpleyaml -- Go package to interact with arbitrary YAML

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: golang-github-smallfish-simpleyaml Version : 0.0~git20170911.a320310-1 Upstream Author : 陈小玉 * URL : https://github.com/smallfish/simpleyaml * License

Bug#972759: ITP: golang-github-iafan-cwalk -- Concurrent filepath.Walk replacement

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: golang-github-iafan-cwalk Version : 0.0~git20191125.dd7f505-1 Upstream Author : Igor Afanasyev * URL : https://github.com/iafan/cwalk * License

Bug#967051: ITP: seqkit: Cross-platform and ultrafast toolkit for FASTA/Q file manipulation

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: seqkit Version : 0.12.1+ds-1 Upstream Author : 2016-2020 Wei Shen, 2019 Oxford Nanopore Technologies <https://github.com/knsv/mermaid> * License

Bug#967009: ITP: golang-github-bsipos-thist :Generates online histograms and plots them with golang

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: golang-github-bsipos-thist Version : 1.0.0-1 Upstream Author : 2019 Botond Sipos * URL : https://github.com/bsipos/thist <https://github.com/knsv/merm

Bug#966681: ITP: golang-gonum-v1-plot :Provides an API for building and drawing plots in Go

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: golang-gonum-v1-plot Version : 0.7.0-1 Upstream Author : 2013-2019 Ethan Burns Steve McCoy Dan Kortschak

Bug#963764: [Pkg-javascript-devel] Bug#963764: Bug#963764: node-node-sass: uses embedded old security-buggy libsass

Hi, On Wed, 8 Jul 2020, 19:30 Jonas Smedegaard, wrote: > Quoting mer...@debian.org (2020-07-08 15:13:06) > > The upstream has updated the libsass support to 3.6.3 [1], it's just > > not released yet. I have successfully used head of their git > > repository to build node-node-sass without the

Bug#963764: [Pkg-javascript-devel] Bug#963764: Bug#963764: node-node-sass: uses embedded old security-buggy libsass

On Wed, 8 Jul 2020, 20:22 Jonas Smedegaard, wrote: > Quoting Nilesh Patra (2020-07-08 16:26:34) > > On Wed, 8 Jul 2020, 19:30 Jonas Smedegaard, wrote: > > > Please strongly consider to not only make the package link with > > > system-shared libsass, but also

Bug#963764: [Pkg-javascript-devel] Bug#963764: Bug#963764: node-node-sass: uses embedded old security-buggy libsass

On Wed, 8 Jul 2020, 20:38 Jonas Smedegaard, wrote: > Quoting Nilesh Patra (2020-07-08 17:00:01) > > On Wed, 8 Jul 2020, 20:22 Jonas Smedegaard, wrote: > > > > > Quoting Nilesh Patra (2020-07-08 16:26:34) > > > > On Wed, 8 Jul 2020, 19:30 Jonas Smedegaar

Bug#964266: ITP: golang-github-brentp-irelate: Streaming relation testing of sorted files of intervals

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: golang-github-brentp-irelate Version : 0.0~git20180801.1bf7c8f+ds-1 Upstream Author : Brent Pedersen * URL : https://github.com/brentp/irelate <ht

Bug#964273: ITP: golang-github-brentp-vcfgo: Golang library to read, write, manipulate VCF format files

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: golang-github-brentp-vcfgo Version : 0.0~git20190824.654ed2e-1 Upstream Author : Brent Pedersen * URL : https://github.com/brentp/vcfgo <ht

Bug#964307: ITP: golang-github-brentp-bix: Tabix file access with golang using biogo machinery (library)

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: golang-github-brentp-bix Version : 0.0~git20190718.00aa7a7+ds-1 Upstream Author : Brent Pedersen * URL : https://github.com/brentp/bix <https://github.

Bug#964932: ITP: golang-github-yuin-gluare: Regular expression library for the GopherLua

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: golang-github-yuin-gluare Version : 0.0~git20170607.d7c94f1-1 Upstream Author : Yusuke Inuzuka * URL : https://github.com/yuin/gluare <https://github.

Bug#964933: ITP: golang-github-brentp-goluaez: Easy embedding Lua in go

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: golang-github-brentp-goluaez Version : 0.0~git20160116.dd35d08-1 Upstream Author : Brent Pedersen * URL : https://github.com/brentp/goluaez <ht

Bug#963001: ITP: yanagiba: Filters low quality Oxford Nanopore reads basecalled with Albacore

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: yanagiba Version : 1.0.0 Upstream Author : Adam Taranto * URL : https://github.com/Adamtaranto/Yanagiba <https://github.com/knsv/mermaid> * L

Bug#963047: ITP: ngmlr: CoNvex Gap-cost alignMents for Long Reads

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: ngmlr Version : 0.2.7 Upstream Author : Philipp Rescheneder * URL : https://github.com/philres/ngmlr <https://github.com/knsv/mermaid> * L

Bug#963078: ITP: paryfor: Parallel_for implementation based on atomic queues

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: paryfor Version : 0.1 Upstream Author : Erik Garrison * URL : https://github.com/ekg/paryfor <https://github.com/knsv/mermaid> * License :

Bug#963137: ITP: ncls: Datastructure for interval overlap queries

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: ncls Version : 0.0.53 Upstream Author : Endre Bakken Stovner * URL : https://github.com/biocore-ntnu/ncls <https://github.com/knsv/mermaid> * L

Bug#963628: [Pkg-javascript-devel] Bug#963628: Bug#963628: Node-jest fails with: Error: Cannot find module 'import-local'

On Sun, 28 Jun 2020, 02:45 Xavier, wrote: > Control: severity -i grave > Thanks. > Le 24/06/2020 à 21:18, Nilesh Patra a écrit : > > Package: node-jest > > Severity: serious > > > > Dear Maintainer, > > > > Node-jest fails with the follo

Bug#963628: [Pkg-javascript-devel] Bug#963628: Bug#963628: Node-jest fails with: Error: Cannot find module 'import-local'

Also, as I dug in a bit, the "import-local" module has this description: """ Let a globally installed package use a locally installed version of itself if available For our use-case we would need modules only from /usr/share/* right? So _maybe_ this has no real use here? Let me know if this

Bug#962941: ITP: streamz: Helps build pipelines to manage continuous streams of data

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: streamz Version : 0.5.3 Upstream Author : Continuum Analytics, Inc. and contributors * URL : https://github.com/python-streamz/streamz <https://github.

Bug#956694: Clarification: [RFS] spdlog

> For sopt, the build fails with the logs same as what Ole sharedearlier - but > looking at them, it seems that spdlog is probably not responsible for the > failure. By same logs, I do not mean the one in the original bug report, but the logs which Ole got after workaround: #953855 cd

Bug#962947: ITP: shovill: Assemble bacterial isolate genomes from Illumina paired-end reads

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: shovill Version : 1.1.0 Upstream Author : Torsten Seemann * URL : https://github.com/tseemann/shovill <https://github.com/knsv/mermaid> * L

Bug#962965: ITP: yanosim:Read simulator nanopore DRS datasets

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: yanosim Version : 0.1 Upstream Author : Matthew Parker * URL : https://github.com/bartongroup/yanosim <https://github.com/knsv/mermaid> * L

Bug#962888: ITP: readucks: Nanopore read de-multiplexer

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: readucks Version : 0.0.3 Upstream Author : Andrew Rambaut * URL : https://github.com/artic-network/readucks/ <https://github.com/knsv/mermaid> * L

Bug#963164: ITP: pyrle: Run length arithmetic in Python using Cython

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: pyrle Version : 0.0.31 Upstream Author : Endre Bakken Stovner * URL : https://github.com/pyranges/pyrle <https://github.com/knsv/mermaid> * L

Bug#963465: ITP: node-natural-sort: Sorting with support for numbers, dates, unicode and more

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: node-natural-sort Version : 1.0.0-1 Upstream Author : Studio B12 GmbH * URL : https://github.com/studio-b12/natural-sort <https://github.com/knsv/merm

Bug#963189: ITP: sorted-nearest: Cython helper library for pyranges

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: sorted-nearest Version : 0.0+git20200319.8204815+ds Upstream Author : Endre Bakken Stovner * URL : https://github.com/pyranges/sorted_nearest <ht

Bug#963628: Node-jest fails with: Error: Cannot find module 'import-local'

Package: node-jest Severity: serious Dear Maintainer, Node-jest fails with the following on all the node-modules I've tried yet. Sample examples on node-compression-webpack-plugin version 2.0.0-3 and node-proper-lockfile version 4.1.1-2 internal/modules/cjs/loader.js:800 throw err; ^

Bug#963927: predictprotein:Unusable, fails with: Assigning non-zero to $[ is no longer possible

Package: predictprotein Version: 1.1.09-2 Severity: severe Dear Maintainer, predictprotein uses `$[ = 1` which is no longer supported with newer perl versions. Way to reproduce: Get the predictprotein source package, and cd there. Try running examples with predictprotein: $ cd examples $

Bug#963927: Bug-report severity fix

Control: severity -1 serious thanks

Bug#962247: Required Configuration Files Not Found

Hi, On Fri, 5 Jun 2020 at 14:30, Andreas Tille wrote: > Hi Dario, > > thanks a lot for your bug report. To bad that nobody reported before > this issue which seems pretty obvious. May be everybody is using circos > with the --conf option (as our autopkgtest is doing it as well) and thus > the

Bug#962085: bcalm, kissplice: both ship /usr/bin/bcalm

Hi, On Wed, 3 Jun 2020, 14:50 Andreas Tille, wrote: > Hi Andreas, > > thanks for spotting this. > > On Wed, Jun 03, 2020 at 09:41:12AM +0200, Andreas Beckmann wrote: > > Package: bcalm,kissplice > > Severity: serious > > User: trei...@debian.org > > Usertags: edos-file-overwrite > > Control:

Bug#964610: nibabel: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.8 returned exit code 13

On Tue, 21 Jul 2020 15:52:22 +0200 Andreas Tille wrote: > Control: tags -1 - upstream > Control: tags -1 pending > > The build time test issue was solved thanks to upstream (switched from > nose to pytest). Unfortunately there are now issues with sphinx to > build the docs. My dirty workaroung

Bug#962863: r-cran-rdflib: autopkgtest regression

On Mon, 15 Jun 2020 11:17:24 +0200 Graham Inggs wrote: > Source: r-cran-rdflib > Version: 0.2.3+dfsg-1 > Severity: serious > X-Debbugs-CC: debian...@lists.debian.org > User: debian...@lists.debian.org > Usertags: regression > > Hi Maintainer > > Sometime in the last month, r-cran-rdflib started

Bug#965383: ITP: golang-github-tatsushid-go-prettytable: Builds a simple text table with a multibyte, doublewidth character support

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: golang-github-tatsushid-go-prettytable Version : 0.0~git20141013.ed2d14c-1 Upstream Author : Tatsushi Demachi * URL : https://github.com/tatsushid/go

Bug#968045: golang-gonum-v1-plot: please make the build reproducible

Hi again, On Fri, 06 Nov 2020 09:18:34 + "Chris Lamb" wrote: > Chris Lamb wrote: > > > Source: golang-gonum-v1-plot > > Version: 0.7.0-2 > > Tags: patch > > Gentle ping on the above? > Thanks again, but unfortunately this patch breaks the autopkgtests :/ The only way to make it reproducible

Bug#974178: python3-biom-format: debci tests fail: Object of type bytes is not JSON serializable

Hi, On Wed, 11 Nov 2020 11:56:10 +0800 Drew Parsons wrote: > Package: python3-biom-format > Version: 2.1.9-2 > Severity: normal > > debci tests for python3-biom-format are show test error triggered by > python3-h5py 3.1.0-1exp1 from experimental. > > The odd thing is that the error trace does

Bug#976497: python-parasail: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 returned exit code 13 Inbox [Imap]/Sent

Control: forwarded -1 https://github.com/jeffdaily/parasail-python/issues/56 Forwarded the issue upstream, hopefully we will have a fix soonish with arm64 becoming more popular.

Bug#976497: python-parasail: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 returned exit code 13

part (hopefully): > > dpkg-buildpackage > > - > > > > Command: dpkg-buildpackage -us -uc -sa -rfakeroot > > dpkg-buildpackage: info: source package python-parasail > > dpkg-buildpackage: info: source version 1.2.1-1 > > dpkg-buildpackage: info: source

Bug#976497: python-parasail: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 returned exit code 13

part (hopefully): >> dpkg-buildpackage >> - >> >> Command: dpkg-buildpackage -us -uc -sa -rfakeroot >> dpkg-buildpackage: info: source package python-parasail >> dpkg-buildpackage: info: source version 1.2.1-1 >> dpkg-buildpackage: info: source

Bug#976479: [Request for help] Bug: #976479 scrappie: FTBFS: scrappie_matrix.h:5:14: fatal error: immintrin.h: No such file or directory

Hi Michael and others, Scrappie looks like a candidate where we can use the simde trick. I tried doing a patch, and it works on amd64 machine, but not on an arm64 porter box :/ (with issues with __v4sf) And I'm not sure how to fix this, and hence this is a humble request to please take a look

Bug#976479: [Request for help] Bug: #976479 scrappie: FTBFS: scrappie_matrix.h:5:14: fatal error: immintrin.h: No such file or directory

lsa.debian.org/med-team/scrappie/-/commit/a00691d910110a460ef5e61a6c74cc2cb0e1a626#5dc91bdd30262777c0556235b73413cd5865a144_0_31 > is the issue > You should add the regular simde includes here, so that v4sf typedef works > > define SIMDE_ENABLE_NATIVE_ALIASES#include > > > >

Bug#976479: [Request for help] Bug: #976479 scrappie: FTBFS: scrappie_matrix.h:5:14: fatal error: immintrin.h: No such file or directory

, another question: This package has a MPL-2.0 license and AFAIK, MPL is a restrictive Free software license, so does this qualify for adding in a "Built-Using" field? Thanks and regards Nilesh On Mon, 7 Dec 2020 at 16:19, Nilesh Patra wrote: > Hi Michael > > Thanks

Bug#976479: [Request for help] Bug: #976479 scrappie: FTBFS: scrappie_matrix.h:5:14: fatal error: immintrin.h: No such file or directory

Hi o/ First of all, thank you for the fixes and letting me know about cowbuilder-dist :-) On Mon, 7 Dec 2020 at 17:51, Michael Crusoe wrote: > > I'd be really grateful if you could take a look at my changes and let me >> know if they look fine. >> > > I'll leave comments on Salsa > Thanks a

Bug#976479: [Request for help] Bug: #976479 scrappie: FTBFS: scrappie_matrix.h:5:14: fatal error: immintrin.h: No such file or directory

[update] On Mon, 7 Dec 2020 at 22:27, Nilesh Patra wrote: > > >> >>> >>> Also, another question: This package has a MPL-2.0 license and AFAIK, >>> MPL is a restrictive Free software license, so does this qualify for adding >>> in a

Bug#962184: [Help] Re: jellyfish FTBFS on 32bit

Hi Andreas, On Thu, 3 Dec 2020 at 03:04, Andreas Tille wrote: > Control: tags -1 help > > Hi, > > I guess this bug is relatively easy to fix by some explicit typing - but > I'm lacking the C++ knowledge to find out where. > Attaching a patch for this, it goes past this. However, the build-time

Bug#977308: shasta: hardcoded dependencies on boost 1.71

Hi Andreas, On Fri, 18 Dec 2020 at 15:53, Andreas Tille wrote: > Control: tags -1 help > > Hi, > > I tried to fix the issue by making dh_shlibdeps work. In > > > https://salsa.debian.org/med-team/shasta/-/commit/366edd672be428cc553b34b99bc614aa698175d6 > > I documented what I tried but all

Bug#976907: golang-github-boltdb-bolt: FTBFS on ppc64el (arch:all-only src pkg): dh_auto_test: error: cd obj-powerpc64le-linux-gnu && go test -vet=off -v -p 160 -short github.com/boltdb/bolt github.co

Hi Andreas, On Sat, 12 Dec 2020 18:48:52 +0100 Andreas Henriksson wrote: > Hello again, > > So after wasting my time here I finally realized that apparently > boltdb is archived upstream. It will not receive any fixes. > > Apparently golang-github-coreos-bbolt is a maintained feature-extended >

Bug#977155: ITP: node-thenby: library that helps sorting arrays on multiple keys

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: node-thenby Version : 1.3.4+git20200720.0fd165a+ds-1 Upstream Author : Teun Duynstee * URL : https://github.com/Teun/thenBy.js * License : Apache

Bug#965114: golang-github-shenwei356-bwt: FTBFS: unsatisfiable build dependency

Control: severity -1 minor On Tue, 10 Nov 2020 21:39:40 +0530 Nilesh Patra wrote: > sbuild (Debian sbuild) 0.79.1 (22 April 2020) on debian > > ++ > | golang-github-shenwei356-bwt 0.0

Bug#974774: ITP: golang-github-alexflint-go-arg -- Struct-based argument parsing in Go

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: golang-github-alexflint-go-arg Version : 1.3.0+ds Upstream Author : Alex Flint * URL : https://github.com/alexflint/go-arg * License : BSD-2-Clause

Bug#926079: ITP: golang-github-alexflint-go-scalar -- Go-lang Scalar parsing library

Hi, Any update on this package? It seems that it hasn't landed in the archive yet. We need this to package https://github.com/alexflint which is another chain of deps to get bcbio working. If there's no issue at your end, this shall be uploaded to NEW. Please let me know if there's any update

Bug#974798: ITP: ggd-utils -- programs for use in ggd

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: ggd-utils Version : 0.0.7+ds Upstream Author : gogetdata * URL : github.com/gogetdata/ggd-utils * License : Expat Programming Lang: Golang

Bug#974178: python3-biom-format: debci tests fail: Object of type bytes is not JSON serializable

Hi, debci seems happy now. https://ci.debian.net/packages/p/python-biom-format/unstable/amd64/ https://ci.debian.net/data/autopkgtest/unstable/amd64/p/python-biom-format/8336917/log.gz Should this bug be closed now? Please let me know/do so if you feel this is done. (I can close it myself in a

Bug#974834: ITP: gsort -- Sort genomic data

Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-CC: debian-de...@lists.debian.org * Package name: gsort Version : 0.1.4-1 Upstream Author : Brent Pedersen * URL : https://github.com/brentp/gsort * License : Expat Programming Lang: Golang

Bug#978760: man page for lua-busted (binary: busted)

fault: off) .TP \fB\-\-[no\-]sort\-tests\fR sort test order within a file (default: off) .TP \fB\-\-[no\-]suppress\-pending\fR suppress `pending` test output (default: off) .TP \fB\-\-[no\-]defer\-print\fR defer print to when test suite is complete (default: off) .PP ; re\-run with \fB\-

Bug#978662: apertium-cy-en: autopkgtest failure

Hi Tino, On Tue, 29 Dec 2020 23:21:15 +0100 Tino Didriksen wrote: > This is a chicken-and-egg problem that should solve itself. New apertium > 3.7.1 can't migrate until apertium-cy-en is fixed, but fixed apertium-cy-en > won't build correctly with existing apertium 3.6.1. On declaring hard

Bug#962717: q2-quality-control seems so uncover segfaults in bowtie2

On Fri, 15 Jan, 2021, 2:12 am Andreas Tille, wrote: > Hi, > > since q2-taxa is in new I intended to upload q2-quality-control as well. > I don't know about the segfaults, but I don't see q2-taxa in NEW? You probably uploaded it more than 8 hours ago from the time I'm typing this mail, it

Bug#962717: q2-quality-control seems so uncover segfaults in bowtie2

On Fri, 15 Jan, 2021, 11:30 am Andreas Tille, wrote: > Hi, > > On Fri, Jan 15, 2021 at 10:16:45AM +0530, Nilesh Patra wrote: > > > > I don't know about the segfaults, but I don't see q2-taxa in NEW? You > > probably uploaded it more than 8 hours ago from the ti

Bug#976735: spyder needs source upload for Python 3.9 transition

Hi Julian I read through the rest of the thread. On Mon, 1 Feb, 2021, 6:31 pm Julian Gilbey, wrote: > I have a package of Spyder 4 waiting to upload, but it requires five > packages to be accepted into unstable from NEW first (pyls-server, > pyls-black, pyls-spyder, abydos, textdistance); once

Bug#976735: spyder needs source upload for Python 3.9 transition

Hi Julian, On Sun, 13 Dec 2020 06:58:29 + Julian Gilbey wrote: > On Mon, Dec 07, 2020 at 05:38:26PM +0200, Adrian Bunk wrote: > > Package: spyder > > Version: 3.3.6+dfsg1-5 > > Severity: serious > > > > Since binNMUs are not possible for binary-all packages, > > a source upload is needed for

Bug#976735: spyder needs source upload for Python 3.9 transition

Hi Julian, On Sun, 13 Dec 2020 06:58:29 + Julian Gilbey wrote: > On Mon, Dec 07, 2020 at 05:38:26PM +0200, Adrian Bunk wrote: > > Package: spyder > > Version: 3.3.6+dfsg1-5 > > Severity: serious > > > > Since binNMUs are not possible for binary-all packages, > > a source upload is needed for

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