Le mer. 19 juil. 2023, 06:58, Andreas Tille a écrit :
> Hi Olivier,
>
> Am Mon, Jul 17, 2023 at 12:13:30PM +0200 schrieb olivier sallou:
> > logol is not maintained anymore for quite some time now
> >
> > effort to keep in line with swi-prolog updates (need to reco
I answered in bug (cc andreas)
for me not a bug, just an information on setup, so bug should be
closed/rejected.
I do not understand very well why a bug is created as install is ok, just
getting logs that config is not ok and installation steps are given.
Andreas, do you want me to upload the
ranch tip is behind its
> remote
> hint: counterpart. Check out this branch and integrate the remote
> changes
> hint: (e.g. 'git pull ...') before pushing again.
> hint: See the 'Note about fast-forwards' in 'git push --help' for
> details.
> gbp:error: Failed to push some refs
> interested people in debian-java.
groovy is definitly a Java tool needed for many java packages, you
should get help/interest from debian-java for this.
I already had issue with previous groovy versions and antlr too,
upgrades breaking stuff
Olivier
>
> >
> > Thanks a lot for wor
Hi,
I won't be able to come to this year's sprint unfortunatly.
Family matters and organization would make it difficult, wish you a nice
sprint weekend and hope i will be able to join next one
Olivier
est person to guesstimate such costs so please even
> state any 'obvious' amounts :)
>
> Cheers
> Sascha
>
>
> [1] https://lists.debian.org/debian-sprints/2020/01/msg0.html
> [2] https://lists.debian.org/debian-sprints/2020/01/msg9.html
--
Olivier Sallo
Hi,
did sprint organizer asked for DDs funding?
Olivier
On Wed, 2022-12-07 at 14:07 +0200, Andrius Merkys wrote:
> Hello,
>
> On 2022-12-07 10:02, olivier sallou wrote:> Is it really failing ?
> [1]
> link only shows failure due to max execution
> > time in CI and job was killed by CI.
>
> seqan2 indeed builds (it
On Wed, 2022-12-07 at 07:42 +0100, Andreas Tille wrote:
> Hi,
>
> I just wanted to do some polishing changes (watch file + lintian-
> brush)
> but I realised seqan2 is failing to build[1].
Is it really failing ? [1] link only shows failure due to max execution
time in CI and job was killed by
> > should not delay the sprint too much after the beginning of the
> > freeze?
>
> Yes, its better in January and I would love if Pierre would join.
>
> See you all hopefully
>
> Andreas.
>
--
Olivier Sallou
Univ Rennes, Inria, CNRS, IRISA
Irisa, Campus de Beau
Le lun. 28 mars 2022 à 16:24, Pierre Gruet a écrit :
>
> Hello everyone,
>
> Recently I worked on biojava-live (locally, pushed nothing to Salsa),
> which currently has version 1.7.1. Upstream is active and published
> version 1.9.5 of this "legacy" biojava, which is still used by many
>
Le jeu. 24 févr. 2022 à 11:33, Nilesh Patra a écrit :
> On Thu, Feb 24, 2022 at 11:04:43AM +0100, olivier sallou wrote:
> > got this autoremoval message I do not understand. biomaj3-core (and other
> > biomaj3 packages) do not depend on dh-php.
> > It is python app, not
Hi,
got this autoremoval message I do not understand. biomaj3-core (and other
biomaj3 packages) do not depend on dh-php.
It is python app, not php related and a apt-rdepends do not show any dh-php
relation
Same for elixir-lang relation...
Any idea ?
Olivier
-- Forwarded message
Le lun. 13 déc. 2021 à 21:18, Peter Rice a écrit :
> Hi Andreas,
>
> I can take a look. What's the problem?
>
Com.sun.net.ssl has been removed from java base package.
Its (long time) replacement javax.net.ssl should be used instead
> Still working through getting EMBOSS moved to github with
Le lun. 13 déc. 2021 à 18:55, Andreas Tille a écrit :
> Hi,
>
> I've just asked for help on bug #982036 but no response so far. I think
> it is time to care if we want to keep emboss for the next stable
> release.
>
Hummm, if not called in too many places, i expect ssl stuff should be quite
test.
Olivier
>
>
> Any help would be welcome
>
> Andreas.
>
>
--
Olivier Sallou
Univ Rennes, Inria, CNRS, IRISA
Irisa, Campus de Beaulieu
F-35042 RENNES - FRANCE
Tel: 02.99.84.71.95
gpg key id: 4096R/326D8438 (keyring.debian.org)
Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
m/tests/test_table.py::TableTests::test_to_hdf5_missing_metadata_s
> ample
was already tested on python3 ?
One issue seems to be a comparison by bytes vs string(common error with
py3 transition):
E AssertionError: b'GUT' not found in ('GUT', 'SKIN')
>
>
> Any help would be welcome
>
Le mer. 21 juil. 2021 à 17:18, Andreas Tille a écrit :
> Hi Shruti,
>
> On Wed, Jul 21, 2021 at 01:32:35PM +0530, Shruti Sridhar wrote:
> >
> > I am working on writing autopkgtests for logol [1] and the test passes in
> > my chroot but fails the pipeline
>
> Hmmm, this
>
>
> + JAVA_OPTS='
Hi,
I see you uploaded a biojava4-live package (biojava4-live 4.2.12+dfsg-3.1)
some months ago, but git is not up-to-date, seems you forgot to push your
updates.
Could you please fix that?
Thanks
Olivier
Le jeu. 28 janv. 2021 à 07:37, Andreas Tille a écrit :
> On Thu, Jan 28, 2021 at 06:52:23AM +0100, olivier sallou wrote:
> > Will have a look on this tomorrow. Is git repo up to date ?
>
> I think I can deal with it now thanks to Pierre's patch and hint.
>
Having a look, I in
Le mer. 27 janv. 2021 à 21:47, Andreas Tille a écrit :
> Hi,
>
> I've tried to upgrade picard-tools in Git. Unfortunately (and
> admittedly not unexpected) the build time tests are failing:
>
Not failing would indeed have been a surprise ;-)
Will have a look on this tomorrow. Is git repo
larity cons is non-root env , but for most of our users this is
fine as long as they do not need to modify container content.
May be an issue for *some* tools writing in /var/lib|cache etc.. but
most will be fine.
Olivier
>
> Best,
> Steffen
>
>
--
Olivier Sallou
Univ R
our opinion. I will proceed with submitting a request
> for
> the lintian check (with the help from Nilesh). I think such lintian
> check would be of value independently of whichever way to create and
> maintain manpages is chosen for standardization.
>
> Best,
> Andrius
>
e is not a real target arch for
our users.
We should focus on not blocking lib and related packages
Means we should patch d/control for libsis-jhdf5-jni to remove s390x
support
Olivier
>
> Kind regards
>
> Andreas.
>
> > [1]:
> > https://buildd.debian.or
pendent too
Olivier
>
> Kind regards
>
> Andreas.
>
>
> [1]
> https://ci.debian.net/data/autopkgtest/unstable/arm64/j/jellyfish/8010459/log.gz
>
--
Olivier Sallou
Univ Rennes, Inria, CNRS, IRISA
Irisa, Campus de Beaulieu
F-35042 RENNES - FRANCE
Tel: 02.9
ou
should juste get directory created empty with appropriate rights
My 2 cents...
Olivier
>
> > I do not think that we should try to compete with our very specific
> > low-popcon stuff with tzdata. We have to find a low maintenance
> > solution.
>
> Sure!
>
>
Hi
Vienna rna has been added to autobuild, next source uploads should be fine
now
Olivier
Hi,
could you please allow the package vienna-rna, in non-free, for autobuild.
d/control has already field XS-Autobuild set.
License is compliant for autobuild as all license restrictions are related
to free usage/redistribution of the software, which is debian case. No
restriction on
onds
>
> while my preparation in Git has only
>
> 16 failed, 911 passed, 10 skipped, 4 warnings in 38.50
> seconds
>
> which seems slightly better. I admit I'd feel better if we would
> solve
> those 16 failed tests and clarify why these
On Tue, 2020-09-22 at 22:07 +0200, Andreas Tille wrote:
> Hi Olivier,
>
> On Tue, Sep 22, 2020 at 09:38:42PM +0200, Pierre Gruet wrote:
> > Hi Olivier and Andreas,
> >
> > Le 22/09/2020 à 15:41, olivier sallou a écrit :
> > > On Tue, 2020-09-22 at 07:45 +0200,
either pbuilder or sbuild. I would like to
> > reproduce
> > the issues but I can't.
> >
> > Have you already met such problem before?
>
> I observed that some package did not build for me but for
> others. For
> instance htsjdk did not build for me but
puter
> > (also
> > with amd64), with either pbuilder or sbuild. I would like to
> > reproduce
> > the issues but I can't.
> >
> > Have you already met such problem before?
>
> I observed that some package did not build for me but for
> others. Fo
> > reproduce
> > the issues but I can't.
> >
> > Have you already met such problem before?
>
> I observed that some package did not build for me but for
> others. For
> instance htsjdk did not build for me but Olivier Sallou was
> successful.
> Unfortun
On Tue, 2020-09-15 at 10:44 +0200, Andreas Tille wrote:
> On Tue, Sep 15, 2020 at 10:09:10AM +0200, olivier sallou wrote:
> > On Sun, 2020-09-13 at 21:37 +0200, Pierre Gruet wrote:
> > > - the test
> > > htsjdk.samtools.SAMSequenceDictionaryTest.testMergeDictionar
_REQUIRED_TAG:File
> /work/testMakeWriterPathbam, Error parsing SAM header. @RG line
> missing
> SM tag. Line: @RG ID:1
>
> I don't know either what to do with it.
>
> Does anyone have some experience with htsjdk to guide me? Inspecting
> the
> inputs of the tests i
Hi,
I got compil and tests issues in the past, but were linked to jdk version
available in debian vs their expected version.
Those errors looks like context/data issues.
I do not know the software itself so will be of little help
Olivier
Le lun. 14 sept. 2020 à 12:59, Andreas Tille a écrit
denied
> > > > make[2]: *** [Makefile:48: uk/ac/sanger/artemis/Action.class]
> > Error 126
> > >
> > > The full build log is available from:
> > >
> > http://qa-logs.debian.net/2020/06/20/artemis_17.0.1+dfsg-2_unstable.log
> > >
>
hi,
trying to upgrade picard-tools, and as usual, it breaks.
I started to update patches etc... and need more patching :-(
but current issue is that, as usual, it makes use of htsjdk functions not
available in current debian version.
picard-tools and htsjdk are always closely linked... so
Hi,
I've seen several bug reports raised after debian archive rebuild [0],
seems several are linked to ncbi-vdb.
Packages failed against v2.10 uploaded this month by andreas.
Seems this release broke ABI getting many undefined symbols errors.
Don't think we'll be able to patch this (would need to
in working directory) deleted:src/cpp/Version.hpp
no changes added to commit (use "git add" and/or "git commit -a")
gbp:error: Use --git-ignore-new to ignore.
> gbp clone g...@salsa.debian.org:med-team/ataqv.git
>
>
>
> Thanks!
>
>
--
Olivier Sallou
Univ
- Mail original -
> De: "Charles Plessy"
> À: "debian-med"
> Envoyé: Vendredi 10 Janvier 2020 07:36:12
> Objet: Running Debian Med through Singularity.
> Hi all,
>
> long time no post,
>
> happy new year !
>
> At work, our cluster is running CentOS... but it has Singularity
>
ink to the poll:
>>
>> https://dudle.inf.tu-dresden.de/debianmed2020/
>>
>> If we agree to have the sprint in Berlin and also agreed on a date, I would
>> be happy to set up a wiki page.
>>
>> Best regards
>> Sascha
>>
>>
>> [1] https://www
Hi,
has anyone made an hotel choice for the sprint so that we can start
reservertions to be together if possible?
We could also possibly share some room.
Olivier
--
Olivier Sallou
Univ Rennes, Inria, CNRS, IRISA
Irisa, Campus de Beaulieu
F-35042 RENNES - FRANCE
Tel: 02.99.84.71.95
gpg key
- Andreas Tille a écrit :
> On Mon, Dec 09, 2019 at 05:18:37PM 0100, Michael Crusoe wrote:
> > On Sat, 9 Mar 2019 23:26:01 +0100 Andreas Tille wrote:
> > > Control: severity -1 normal
> > >
> > > On Sat, Mar 09, 2019 at 08:24:46PM +0100, Andreas Beckmann wrote:
> > > >
> > > > during a
ible.
>
> ->
> https://wiki.debian.org/Sprints/2020/Debian%20Med%20Sprint%20Feb%202020%2C%20Berlin
>
> Cheers
> Sascha
>
--
Olivier Sallou
Univ Rennes, Inria, CNRS, IRISA
Irisa, Campus de Beaulieu
F-35042 RENNES - FRANCE
Tel: 02.99.84.71.95
gpg key id: 4096R/326D8438 (keyring
On 11/19/19 9:51 AM, Andreas Tille wrote:
> Hi Olivier,
>
> On Tue, Nov 19, 2019 at 09:46:11AM +0100, Olivier Sallou wrote:
>> I uploaded some time ago python-easydev with py2 removal.
>>
>> I do not understand why however it did not move to testing?
> Me neith
Hi,
I uploaded some time ago python-easydev with py2 removal.
I do not understand why however it did not move to testing?
Reproducibility testing is fine , and only excuse in tracker is:
"
Migration status for python-easydev (0.9.37-1 to 0.9.38-2): Will attempt
migration (Any information
On 11/14/19 2:10 PM, Markus Koschany wrote:
> Hi,
>
> Am 14.11.19 um 09:44 schrieb Andreas Tille:
>> Hi,
>>
>> I'd be very happy if Debian Java team could comment on the analysis
>> of libs done by Olivier to enable us upgrading IGV.
>>
>> On Thu, Nov
encies on different versions of libhdf-dev - somewhat
> unexpected. The changelog found Sascha, Andreas and Olivier as past
> active maintainers. Do you have further insights for me? And - is IGV a
> reasonable package to be backported?
>
> Regards,
> Steffen
>
--
Olivier Sal
? And - is IGV a
> reasonable package to be backported?
>
> Regards,
> Steffen
>
--
Olivier Sallou
Univ Rennes, Inria, CNRS, IRISA
Irisa, Campus de Beaulieu
F-35042 RENNES - FRANCE
Tel: 02.99.84.71.95
gpg key id: 4096R/326D8438 (keyring.debian.org)
Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
open(corrected_dataset_yaml_filename, 'r'))
> make[1]: *** [debian/rules:61: override_dh_auto_test] Error 1
>
>
>
> Please note: In commit 54bc9d00e8638f0ab350c620e9b5446f776340e7
> I tried to address exactly this issue but failed obviously.
>
> Any help would be really appreciated.
>
> Kind re
- Mail original -
> De: "andreas"
> À: 937...@bugs.debian.org, "debian-med" ,
> "Olivier Sallou"
> Envoyé: Vendredi 8 Novembre 2019 14:07:32
> Objet: Removing mobyle from Debian? (Was: mobyle: Python2 removal in
> sid/bullseye)
>
Hi Andreas,
Was looking at racon FTBS and I saw that you started a new upstream
release 1.4.7.
It now depends on liblogger-dev, I cannot however find this lib in
debian (not even in NEW).
Is it a pending issue? An error?
Olivier
--
gpg key id: 4096R/326D8438 (keyring.debian.org)
Key
On 10/4/19 3:07 PM, Andreas Tille wrote:
> Hi Olivier,
>
> On Fri, Oct 04, 2019 at 02:14:02PM +0200, olivier sallou wrote:
>>> Program received signal SIGSEGV: Segmentation fault - invalid memory
>>> reference.
>> I really do not see what error could be. Maybe a
- Mail original -
> De: "Olivier Sallou"
> À: "941805" <941...@bugs.debian.org>
> Envoyé: Lundi 7 Octobre 2019 17:09:50
> Objet: Re: [Debian-med-packaging] Bug#941805: hmmer: autopkgtest regression:
> hmmpgmd_ga] ... FAILED [crash!]
>
Cc'ing
- Mail transféré -
> De: "Olivier Sallou"
> À: "941805" <941...@bugs.debian.org>
> Envoyé: Lundi 7 Octobre 2019 17:09:50
> Objet: Re: [Debian-med-packaging] Bug#941805: hmmer: autopkgtest regression:
> hmmpgmd_ga] ... FAILED [crash!]
&g
ave non :-(
was expecting something from debian mentors which was in cc...
>
> Kind regards
>
> Andreas.
>
--
Olivier Sallou
Univ Rennes, Inria, CNRS, IRISA
Irisa, Campus de Beaulieu
F-35042 RENNES - FRANCE
Tel: 02.99.84.71.95
gpg key id: 4096R/326D8438 (keyring.debian.org)
Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
rating that data
> with the udd? And did I do the modification of the blends' task page
> correctly?
>
> Many thanks and greetings,
> Steffen
>
>
>
--
Olivier Sallou
Univ Rennes, Inria, CNRS, IRISA
Irisa, Campus de Beaulieu
F-35042 RENNES - FRANCE
Tel: 02.99.84.71.95
gpg key id: 4096R/326D8438 (keyring.debian.org)
Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
^
> 10 errors
> :compileJava FAILED
> :compileJava (Thread[Task worker for ':',5,main]) completed. Took 4.782 secs.
>
> FAILURE: Build failed with an exception.
>
>
> The failures are looking like missing Build-Depends at first look but these
> should be OK. Any
turn
line_string() ; }
do the job and test pass
but I would prefer a c++ friend to acknowledge this It works but I
do not if there are side effects
Olivier
>
> Thanks for your analysis anyway
>
> Andreas.
>
> On Tue, Aug 20, 2019 at 03:36:48PM +0200, Olivier S
aits, _Alloc>&&)
> [with _CharT = char; _Traits = std::char_traits; _Alloc =
> std::allocator]'
> 732 | operator=(basic_string&& __str)
> | ^~~~
> make[3]: *** [Makefile:781: test_text_reader.o] Error 1
>
>
> Kind regards
>
>
er and the EU location
> (from a backup of my old dput.cf <http://dput.cf> configuration)
>
> Is this a known issue?
perhaps you have to wait for buildd to build package? (as it is source
only upload)
which package did you upload?
Olivier
>
> Thanks,
>
> --
> Michae
On 7/24/19 11:30 AM, Michael Crusoe wrote:
>
> On Wed, Jul 24, 2019, 11:27 Olivier Sallou <mailto:olivier.sal...@irisa.fr>> wrote:
>
>
> On 7/24/19 9:03 AM, Michael Crusoe wrote:
>> Hello friends,
>>
>> My new laptop is running Ubuntu B
d is here
> https://salsa.debian.org/med-team/pizzly :)
>
> I just don't see it.
>
> Many thanks
>
> Steffen
>
>
--
Olivier Sallou
Univ Rennes, Inria, CNRS, IRISA
Irisa, Campus de Beaulieu
F-35042 RENNES - FRANCE
Tel: 02.99.84.71.95
gpg key id: 4096R/326D8438 (keyring.debian.org)
Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
nno-0.3.1/obj-x86_64-linux-gnu/src\" -v
> -p 4 returned exit code 1
> ...
>
> which I get when trying to build in a pbuilder chroot.
>
> Kind regards
>
>Andreas.
>
> PS: I'm not subscribed to debian-go list - please CC me.
>
>
> [1] https://salsa.debian.org
On 4/5/19 10:09 AM, Andreas Tille wrote:
> On Fri, Apr 05, 2019 at 10:05:09AM +0200, Olivier Sallou wrote:
>>>>> Frequently, on conda package update, it checks and propose to update
>>>>> conda. If it is installed via debian package, it should not self update
>
On 4/5/19 9:55 AM, Andreas Tille wrote:
> On Fri, Apr 05, 2019 at 09:23:22AM +0200, Andreas Tille wrote:
>> Hi Olivier,
>>
>> On Fri, Apr 05, 2019 at 08:59:57AM +0200, Olivier Sallou wrote (in another
>> mail which I merged in here):
>>>> https://sals
On 4/5/19 8:59 AM, Olivier Sallou wrote:
> On 4/4/19 10:30 PM, Andreas Tille wrote:
>> Hi,
>>
>> I'd like to ask for help with packaging Conda. I think its good to have
>> it packaged since several users use it and finally we want to support
>> our users as
_
> Debian-med-packaging mailing list
> debian-med-packag...@alioth-lists.debian.net
> https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-packaging
>
> - End forwarded message -
>
--
Olivier Sallou
Univ Rennes, Inria, CNRS, IRISA
Irisa, Campus de Beaulieu
F-35042 RENNES - FRANCE
Tel: 02.99.84.71.95
gpg key id: 4096R/326D8438 (keyring.debian.org)
Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
920...@bugs.debian.org>, olivier sallou , Paul
Gevers
Hi Olivier
Paul says a targeted fix for the autopkgtest will be eligible for an
unblock.
Regards
Graham
hes/controldir.patch
+
+ -- Olivier Sallou Wed, 27 Mar 2019 08:00:39 +
+
cnvkit (0.9.5-2) unstable; urgency=medium
[ Jelmer Vernooij ]
diff -Nru cnvkit-0.9.5/debian/patches/controldir
cnvkit-0.9.5/debian/patches/controldir
--- cnvkit-0.9.5/debian/patches/controldir 1970-01-01 00:00:00.00
> De: "Michael Crusoe"
> À: "debian-med"
> Envoyé: Jeudi 14 Mars 2019 17:14:41
> Objet: "Season of Docs" & Debian-Med
> Google's new "Season of Docs" is an experiment to connect technical writers
> with
> open source projects to improve their documentation. It is unpaid, unlike
> Outreachy or
> De: "Karolis Kalantojus"
> À: "debian-med"
> Envoyé: Dimanche 10 Mars 2019 09:00:30
> Objet: Mirtop packaging
> Hey,
> We've packaged the [ https://salsa.debian.org/med-team/mirtop |
> https://salsa.debian.org/med-team/mirtop ] lib.
> Clone via:
> gbp clone
- Mail original -
> De: "Andrius Merkys"
> À: 923...@bugs.debian.org
> Envoyé: Samedi 9 Mars 2019 16:50:28
> Objet: [Debian-med-packaging] Bug#923637: 923637 is pending
> control: tags -1 + pending
>
> Hello,
>
> the patch is applied in the VCS and the fixed version of the package
Found a coffee opened at 8 near appartments
Caffeine LT
Teatro g. 1, Vilnius 03107, Lituanie
+370 699 77541
https://maps.app.goo.gl/nGpwt
> De: "Michael Crusoe"
> À: "Andrius Merkys"
> Cc: "debian-med"
> Envoyé: Lundi 4 Mars 2019 17:07:53
> Objet: Re: Sprint preparation
> În lun., 4 mar. 2019 la 15:29, Andrius Merkys < [
> mailto:andrius.mer...@gmail.com | andrius.mer...@gmail.com ] > a scris:
>> Hi Andreas,
>> hi all,
>> On
Le jeu. 7 févr. 2019 à 08:02, Andreas Tille a écrit :
> Hi Carnė,
>
> I've put the other uploaders in CC and would like them to comment, thank
> you.
>
> On Wed, Feb 06, 2019 at 04:36:10PM +, Carnė Draug wrote:
> > On Wed, 6 Feb 2019 at 15:43, Andreas Tille wrote:
> > >
> > > > > Thanks for
- Andreas Tille a écrit :
> Source: htsjdk
> Severity: normal
>
> Hi,
>
> if we would have an autopkgtest for the quite popular package htsjdk with
> lots of reverse dependencies it would migrate faster to testing and less
> of its rdepends would be removed from testing temporarily.
Htsjdk
On 1/25/19 11:00 AM, Andreas Tille wrote:
> On Fri, Jan 25, 2019 at 09:35:36AM +0100, olivier sallou wrote:
>>> I fixed htsjdk and pushed fixes to git. I have not yet uploaded however, I
>>> want to test if picard-tools still builds with this version. Will upload if
>>
Ok, I'll take a look.
Le ven. 25 janv. 2019 à 11:00, Andreas Tille a écrit :
> On Fri, Jan 25, 2019 at 09:35:36AM +0100, olivier sallou wrote:
> > > I fixed htsjdk and pushed fixes to git. I have not yet uploaded
> however, I
> > > want to test if picard-tools still
Le ven. 25 janv. 2019 à 09:14, olivier sallou a
écrit :
>
>
> Le jeu. 24 janv. 2019 à 17:52, Andreas Tille a écrit :
>
>> Hi,
>>
>> we updated picard-tools (there is another micro release, thought) but
>> htsjdk is lagging behind upstream. I've
Le jeu. 24 janv. 2019 à 17:52, Andreas Tille a écrit :
> Hi,
>
> we updated picard-tools (there is another micro release, thought) but
> htsjdk is lagging behind upstream. I've commited the last version to
> Git but there are failing tests. Any volunteer?
>
I fixed htsjdk and pushed fixes to
on travel next week.
> Kind regards
>
> Andreas.
>
--
Olivier Sallou
Univ Rennes, Inria, CNRS, IRISA
Irisa, Campus de Beaulieu
F-35042 RENNES - FRANCE
Tel: 02.99.84.71.95
gpg key id: 4096R/326D8438 (keyring.debian.org)
Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
(if I add it to the '/usr/bin/c++ ' line it
> works) just failed. Any last tiny hint to get this done?
>
> Kind regards
>
> Andreas.
>
>
> [1] https://salsa.debian.org/med-team/discosnp
> [2]
> https://salsa.debian.org/med-team/discosnp/commit/6b87aec1e8d587e750
- Andreas Tille a écrit :
> On Thu, Jan 17, 2019 at 06:49:14PM +0100, Olivier Sallou wrote:
> >
> >
> > I tested against a local build of the package though local build (which
> > runs tests) works fine. (both are run on the same machine)!
> &g
On 1/17/19 1:24 PM, Paul Gevers wrote:
> Hi Olivier,
>
> On 17-01-2019 12:12, Olivier Sallou wrote:
>> I tested in buster with updated libbarclay-java (2.1.0-3 pushed today to
>> allow migration to testing) and could rebuild picard-tools from source
>> (with tests) with
On 1/17/19 1:24 PM, Paul Gevers wrote:
> Hi Olivier,
>
> On 17-01-2019 12:12, Olivier Sallou wrote:
>> I tested in buster with updated libbarclay-java (2.1.0-3 pushed today to
>> allow migration to testing) and could rebuild picard-tools from source
>> (with tests) with
On 1/17/19 10:07 AM, Paul Gevers wrote:
> Hi Olivier,
>
> On 17-01-2019 09:38, Olivier Sallou wrote:
>> On 1/17/19 9:25 AM, Paul Gevers wrote:
>>> autopkgtest [04:38:35]: test run-unit-test: [---
>>> Error: Unable to initialize main class
ils. I wonder however
Previous picard-tools in testing did not depend on this library.
Migration of picard-tools is currently blocked by this libbarclay-java
bug (#906973)
Olivier
>
>
> ___
> Debian-med-packaging mailing list
> debian-m
Hi,
Debian leader has approved reimbursment request for Debianmed sprint for
DDs and outreachy students.
Olivier
--
gpg key id: 4096R/326D8438 (keyring.debian.org)
Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
uploaded
I do not use pbuilder but fresh/clean docker containers to build.
>
> Thanks a lot
>
> Andreas.
>
> On Wed, Dec 05, 2018 at 09:44:13PM +0100, Andreas Tille wrote:
>> On Wed, Dec 05, 2018 at 05:19:49PM +0100, Olivier Sallou wrote:
>>> I did a test and it w
gt;
> Thanks a lot
>
> Andreas.
>
> On Wed, Dec 05, 2018 at 09:44:13PM +0100, Andreas Tille wrote:
>> On Wed, Dec 05, 2018 at 05:19:49PM +0100, Olivier Sallou wrote:
>>> I did a test and it worked for me. Does it fail on local test for you or
>>> on
On 12/19/18 11:46 AM, Andreas Tille wrote:
> Hi,
>
> On Wed, Dec 19, 2018 at 10:39:55AM +0100, Olivier Sallou wrote:
>>> The missing class is in libjaxb-api-java. Just make sure it's on the
>>> CLASSPATH.
>> yeap, an other issue at java migration to openjdk 10
- Andreas Tille a écrit :
> Hi Olivier,
>
> On Mon, Dec 17, 2018 at 03:40:30PM +0100, Olivier Sallou wrote:
> >
> > I fixed the issue and pushed to git my patch d/patches/fix_alter-lib.patch
> >
> > The lib was used but the package name in alter-lib.jar i
1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/Distributor.java:23:
>> warning: [deprecation] Observable in java.util has been deprecated
>> [javac] import java.util.Observable;
>> [javac] ^
> Any more hints?
>
> Kind regards
>
>Andreas.
>
--
Olivier Sallou
Univ Rennes, Inria, CNRS, IRISA
Irisa, Campus de Beaulieu
F-35042 RENNES - FRANCE
Tel: 02.99.84.71.95
gpg key id: 4096R/326D8438 (keyring.debian.org)
Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
Hi,
I tried to get reimbursment approval from DPL for sprint organization.
There is no specific issue but DPL expects quite exact funding request,
meaning each DD expected expenses.
I proposed an average cost for approval but DPL really wants a global
budget matching real needs of each DD.
If
Hi,
DebianMed [0] will organize its annual sprint from 9 to 11 march 2019.
Feel free to join us for this event for packaging, bug squashing or key
signing.
More info is available at https://wiki.debian.org/Sprints/2019/DebianMed2019
[1]
[0] https://wiki.debian.org/DebianMed
[1]
On 12/5/18 2:39 PM, Andreas Tille wrote:
> On Sun, Dec 02, 2018 at 01:03:23PM +0100, olivier sallou wrote:
>>> I tried
>>>
>>> // Run tests using both the legacy and barclay command line parsers.
>>> -test {
>>> -dependsOn barclayTest
>&
On 12/5/18 2:39 PM, Andreas Tille wrote:
> On Sun, Dec 02, 2018 at 01:03:23PM +0100, olivier sallou wrote:
>>> I tried
>>>
>>> // Run tests using both the legacy and barclay command line parsers.
>>> -test {
>>> -dependsOn barclayTest
>&
Le dim. 2 déc. 2018 à 12:35, Andreas Tille a écrit :
> On Sat, Dec 01, 2018 at 12:18:40PM +0100, olivier sallou wrote:
> > > 9359e09f6df2c08b2f2ec3269c9243b8ef06c449) provided by
> > > Emmanuel Bourg and also upgrade to latest upstream.
> > > I commited my work t
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