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commit 285b55f4118df72c09e9b97c3e9bcac0bb625a5e
Author: Canberk Koç
Date: Tue Dec 13 01:37:46 2016 +0300
Autopkgtest added
---
debian/changelog
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commit db09ca815ef7ced083c0e8b42e1c44247ae2ddb5
Author: Canberk Koç
Date: Thu Nov 3 03:28:27 2016 +0300
Autopkgtest added
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debian/changelog
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commit cf5a35b0d412c87e289891bfb4b57d0370e77804
Author: Canberk Koç
Date: Thu Oct 27 03:12:33 2016 +0300
Readme.source file adde
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debian/README.source | 5
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from 280a6a0 Document that try to get better hardening failed and
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commit 0d9051a0b9ec1632c6eeb021d7e02bebeacc39b4
Author: Canberk Koç
Date: Thu Oct 27 02:45:09 2016 +0300
autopkgtests added
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debian/changelog
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commit 4908224456491b258e1658a99738a494fdb4bd34
Author: Canberk Koç
Date: Wed Oct 12 23:56:53 2016 +0300
Autopkgtest fixed
---
debian/changelog
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from 10a15d8 Wrapper to use MPI if appropriate
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(+), 1 deletion(-)
diff --git a/debian/README.source b/debian/README.source
new file mode 100644
index 000..c1745c6
--- /dev/null
+++ b/debian/README.source
@@ -0,0 +1,6 @@
+maq for Debian
+-
+
+Test examples taken from http://www.ncbi.nlm.nih.gov
+
+-- Canberk Koç Sat, 20 Aug
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from 178c984 Provide original names choosen by upstream
new e46e762 Autopkgtest fixed
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=medium
+
+ * Team upload.
+ * Autopkgtest fixed
+
+ -- Canberk Koç Sun, 14 Aug 2016 14:49:02 +0300
+
cd-hit (4.6.6-2) unstable; urgency=medium
* Team upload
diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test
index 9744bb0..b5d62e3 100644
--- a/debian/tests/run-unit-test
+++ b
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from d19434a Moved packaging from SVN to Git
new 089e7d8 Autopkgtest added
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r
/changelog
@@ -1,9 +1,15 @@
cd-hit (4.6.6-1) UNRELEASED; urgency=medium
+ * Team upload
+
+ [ Andreas Tille ]
* New upstream version
* Moved from SVN to Git
- -- Andreas Tille Wed, 03 Aug 2016 22:13:30 +0200
+ [ Canberk Koç ]
+ * Autopkgtest added
+
+ -- Canberk Koç Thu, 11 Aug 2016
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from 728aa08 New upstream version
new 91306cf Autopkgtest added with error
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from 82e445b Final spelling fixes
new 2028f9e Autopkgtest added
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) UNRELEASED; urgency=medium
+
+ * Team upload.
+ * Autopkgtest added
+
+ -- Canberk Koç Tue, 09 Aug 2016 07:27:29 +0300
+
emboss (6.6.0+dfsg-3) unstable; urgency=medium
* Make sure we will not delete documentation files from new upstream
diff --git a/debian/tests/control b/debian/tests
ngelog
index 5ad2ef9..71ceebc 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,11 +1,15 @@
amap-align (2.2-6) UNRELEASED; urgency=medium
+ [ Andreas Tille ]
* Add README.source
* Moved packaging from SVN to Git
* hardening=+all
* Add lintian override for false positive
- -- Andreas
/changelog
+++ b/debian/changelog
@@ -1,3 +1,10 @@
+htslib (1.3.1-2) UNRELEASED; urgency=medium
+
+ * Team upload.
+ * Autopktest added
+
+ -- Canberk Koç Wed, 03 Aug 2016 04:21:17 +0300
+
htslib (1.3.1-1) unstable; urgency=medium
36bf59a Merge tag '1.3.1' into debian/unstable
diff --gi
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from c8c5494 Step back to 1.3.1-1, ready for backport.
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from 1a3a3c7 Merge tag 'upstream/2.3.0'
new 6e9fd45 Autopkgtest added
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Lintian raises hardening no fortify warnings that are false positives.
+Test examples taken from http://www.ncbi.nlm.nih.gov/books/NBK52640/
+-- Canberk Koç Tue, 2 Aug 2016 03:30:33 +0300
diff --git a/debian/changelog b/debian/changelog
index 6374d96..c3be456 100644
--- a/debian/changelog
+++ b
.
+
+Example.fa file is combine from Exonerate package's examples.
+(Exonerate released under the GPL version 3+)
+
+-- Canberk Koç Fri, 29 Jul 2016 18:01:31 +0300
diff --git a/debian/changelog b/debian/changelog
index 944d531..5374c4a 100644
--- a/debian/changelog
+++ b/debian/changelog
@@
/changelog
index baf46b2..12a476d 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,12 @@
+fastqc (0.11.5+dfsg-3) UNRELEASED; urgency=medium
+
+ * Team upload.
+
+ [ Canberk Koç ]
+ * Autopkgtest added
+
+ -- Canberk Koç Thu, 28 Jul 2016 02:04:17 +0300
+
fastqc (0.11.5+dfsg-2
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from 870b1fa Corrected for incomplete URL in registry entry
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commit d92947452877415a860c7c8107e6cdfeed54d14e
Author: cbk-guest
Date: Wed Jul 27 00:36:30 2016 +0300
Due to autopkgtest 4.0 release ADT_* become AUTOPKGTES
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@@ -1,8 +1,14 @@
gdpc (2.2.5-6) UNRELEASED; urgency=medium
+ * Team upload
+
+ [ Andreas Tille ]
* Move packaging from SVN to Git
- -- Andreas Tille Sat, 23 Jul 2016 20:43:03 +0200
+ [ Canberk Koç ]
+ * Autopkgtest added.
+
+ -- Canberk Koç Sun, 24 Jul 2016 01:39:50 +0300
gdpc
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from c4275f0 Update repository as uploaded
new 9897345 Autopkgtest added
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:40 +0100
+ [ Canberk Koç ]
+ * autopkgtest added
+
+ -- Canberk Koç Fri, 22 Jul 2016 04:04:40 +0300
clustalw (2.1+lgpl-3) unstable; urgency=low
diff --git a/debian/tests/control b/debian/tests/control
new file mode 100644
index 000..d2aa55a
--- /dev/null
+++ b/debian/tests/control
]
* Enable MPI version of phyml
- -- Andreas Tille Mon, 14 Mar 2016 12:52:14 +0100
+ [ Canberk Koç ]
+ * autopkgtest added
+
+ -- Canberk Koç Wed, 20 Jul 2016 03:01:14 +0300
phyml (3:3.2.0+dfsg-1) unstable; urgency=medium
diff --git a/debian/phyml.examples b/debian/phyml.examples
new file
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from 0018f2c Upload to unstable
new fd0ac4b autopkgtest added
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+ [ Canberk Koç ]
+ * autopkgtest added
+
+ -- Canberk Koç Tue, Jul 19 2016 02:16:42 +0300
dialign (2.2.1-7) unstable; urgency=medium
diff --git a/debian/dialign.examples b/debian/dialign.examples
new file mode 100644
index 000..43d335e
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from 83d8ac8 moved packaging from SVN to Git
new 8411330 autopkgtest added
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Tille Mon, 04 Jul 2016 11:03:33 +0200
+ [ Canberk Koç ]
+ * Autopkgtests added
+
+ -- Canberk Koç Tue, 12 Jul 2016 16:43:31 +0300
clustalo (1.2.1-2) unstable; urgency=medium
diff --git a/debian/clustalo.examples b/debian/clustalo.examples
new file mode 100644
index 000..43d335e
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new 8cea0c0 autopkgtest added
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) UNRELEASED; urgency=medium
+
+ * Team upload
+ [ Andreas Tille ]
* Move packaging from SVN to Git
* cme fix dpkg-control
- -- Andreas Tille Mon, 27 Jun 2016 10:00:34 +0200
+ [ Canberk Koç ]
+ * autopkgtest added
+ * fix for broken tests
+
+ -- Canberk Koç Sun, July 03 2016 13:32:34
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from 985b699 Suppress autoheader which is not used by the project
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new 70fc134 license issue solved
The 1 rev
Debian packaged version
- -- Canberk Koç Thu, 16 Jun 2016 23:15:55 +0300
+ -- Canberk Koç Sun, 3 Jul 2016 01:04:33 +0300
hmmer (3.1b2-2) unstable; urgency=medium
diff --git a/debian/copyright b/debian/copyright
index 9aad7a6..84d2170 100644
--- a/debian/copyright
+++ b/debian/copyright
files directly.
- -- Charles Plessy Sun, 27 Apr 2014 10:44:40 +0900
+ [ Canberk Koç ]
+ * Array error fixed
+ * fixarray.patch added
+
+ -- Canberk Koç Sat, 2 Jul 2016 23:54:40 +0300
perlprimer (1.1.21-2) unstable; urgency=medium
diff --git a/debian/patches/fixarray.patch b
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new 036f0ed Fixarray.patch added
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/upstream/edam
- -- Steffen Moeller Fri, 05 Feb 2016 12:28:26 +0100
+ [ Canberk Koç ]
+ * autopkgtest added
+ * debian/example.fa added
+
+ -- Canberk Koç Thu, 30 Jun 2016 04:31:26 +0300
muscle (1:3.8.31+dfsg-1) unstable; urgency=low
diff --git a/debian/example.fa b/debian/example.fa
new
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from eb75d1c split example data for test into separate arch all package
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The 1 r
=medium
[ Canberk Koç ]
* Autopkgtest added
-
- -- Canberk Koç Sun, 26 Jun 2016 06:32:31 +0300
+ * debian/rules:
+-added dh_clean to override_dh_auto_test section
+-sed perl interpreter path
+
+ -- Canberk Koç Mon, 27 Jun 2016 04:28:31 +0300
primer3 (2.3.7-1) unstable; urgency
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,8 +1,12 @@
primer3 (2.3.7-2) UNRELEASED; urgency=medium
-
+ * Team Upload
+ [ Andreas Tille ]
* Moved packaging from SVN to Git
- -- Andreas Tille Thu, 10 Mar 2016 19:58:20 +0100
+ [ Canberk Koç ]
+ * Autopkgtest added
+
+ -- Canberk Koç
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new 00aad3d autopktest added
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/changelog
index 769b6d8..9d67e71 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,10 +1,16 @@
bwa (0.7.15-1) unstable; urgency=medium
-
+ * team upload
+
+ [ Andreas Tille ]
* New upstream version
* cme fix dpkg-control
* better hardening
+
+ [ Canberk Koç ]
+ * Added testsuite
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from 79b9618 Better hardening, upload to unstable
new 81356eb Autopkgtests and example directory added
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Git
* Recommend fsa since its available in Debian now
- -- Andreas Tille Fri, 24 Jun 2016 18:08:18 +0200
+ [ Canberk Koç ]
+ * Atopkgtest Added
+
+ -- Canberk KoçFri, 25 Jun 2016 19:22:28 +0300
t-coffee (11.00.8cbe486-3) unstable; urgency=medium
--
Alioth's /usr/local/bi
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commit 1da1675b3cbf12fb08127278d86c0ba7aa448013
Author: cbk-guest
Date: Sat Jun 25 19:21:58 2016 +0300
Autopkgtests added
---
debian/rules |
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from 50667e4 Recommend fsa since its available in Debian now
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from 43d688c Re-add debian/ dir
new c0ff301 Autopkgtest suite added with allocation error
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--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,11 @@
+ffindex (0.9.9.7-2) UNRELEASED; urgency=medium
+
+ * Team upload.
+ [Canberk Koç]
+ *Autopkgtest suite added.
+
+ -- Canberk Koç Fri, 24 Jun 2016 07:40:53 +0300
+
ffindex (0.9.9.7-1) unstable; urgency=medium
* New upstream
/debian/changelog
@@ -1,3 +1,13 @@
+infernal (1.1.1-6) UNRELEASED; urgency=medium
+
+ * Team upload.
+ [Canberk Koç]
+ * Added Autopkgtest suite
+ *debian/rules file changed
+ *debian/tests directory added
+
+ -- Canberk KoçWed, 22 Jun 2016 05:35:41 +0300
+
infernal (1.1.1-5) UNRELEASED
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from dc788b2 cme fix dpkg-control
new 6adbb89 Autopkgtests added
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from 7eb2541 Simplify architecture list
new 0516cc5 Autopkgtest added
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repository an
/debian/changelog
@@ -1,3 +1,12 @@
+hmmer (3.1b2-4) UNRELEASED; urgency=medium
+
+ * Team upload.
+ * Autopkgtests added
+ * debian/rules:
+- examples added
+
+ -- Canberk Koç Thu, 16 Jun 2016 23:15:55 +0300
+
hmmer (3.1b2-3) UNRELEASED; urgency=medium
* Set VCS URLs to point to git
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from 9e4f880 Fix package revision version
new 9202441 Autopkgtests added
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/debian/changelog
@@ -1,3 +1,12 @@
+hmmer2 (2.3.2-11) UNRELEASED; urgency=medium
+
+ * Team upload.
+ * autopkgtests added
+ * debian/rules:
+- added example files
+
+ -- Canberk Koç Thu, 16 Jun 2016 22:01:44 +0300
+
hmmer2 (2.3.2-10) UNRELEASED; urgency=medium
* Set VCS URLs to point to
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commit 8f13ea7085e37e75e0eb5872da870efd5ccd195b
Author: Canberk Koç
Date: Thu Apr 7 04:26:38 2016 +0300
Added debian tests
---
debian/changelog
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from 6207500 Better hardening, upload to unstable
new 8f13ea7 Added debian tests
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