Re: [MoM] deepnano getting info from maintainer

On Wed, Mar 08, 2017 at 02:26:48PM +0100, Andreas Tille wrote: > So > now its just waiting whether ftpmaster has some comments and than the > package can migrate to the Debian archive. Package was accepted and is now available in unstable. I added the project as successful MoM effort to the Wiki

Re: [MoM] deepnano getting info from maintainer

Hi Çağrı, On Wed, Mar 08, 2017 at 02:41:18PM +0300, Çağrı ULAŞ wrote: > I change watchdog with python-watchdog and try > > deepnano_basecall_no_metrichor --watch > > I couldn't understand what it's doing exactly. > > $ deepnano_basecall_no_metrichor --watch . > loading complement net > done >

Re: [MoM] deepnano getting info from maintainer

On Wed, Feb 22, 2017 at 08:20:01PM +0100, Andreas Tille wrote: > On Wed, Feb 22, 2017 at 10:10:12PM +0300, Çağrı ULAŞ wrote: > > But i think, this watchdog is not watchdog package, it's python-watchdog. > > I'll try this parameter and push changes in tomorrow. > > Good we talked about this. ;-)

Re: [MoM] deepnano getting info from maintainer

But i think, this watchdog is not watchdog package, it's python-watchdog. I'll try this parameter and push changes in tomorrow. 2017-02-22 21:51 GMT+03:00 Çağrı ULAŞ : > ​​ > Hi Andreas, > > In README.md file they said: > > If you want to watch a directory for new files,

Re: [MoM] deepnano getting info from maintainer

​​ Hi Andreas, In README.md file they said: If you want to watch a directory for new files, first install: > >- watchdog==0.8.3 > > And then use (the output parameter has no effect, we output separate fasta > files for each fast5 file): > OMP_NUM_THREADS=1 python basecall_no_metrichor.py

Re: [MoM] deepnano getting info from maintainer

Hi Çağrı, On Wed, Feb 22, 2017 at 01:45:56AM +0300, Çağrı ULAŞ wrote: > I made some changes and will push them soon. Add manpages for scripts, > changes in testsuite etc. Sounds good. I checked this and noticed you added "Suggests: watchdog". Do you have any specific reason for this

Re: [MoM] deepnano getting info from maintainer

Hi Andreas, I made some changes and will push them soon. Add manpages for scripts, changes in testsuite etc. But when writing manpages, I realize that deepnano uses some files under nets_data/ in default arguments. in source code: parser.add_argument('--template_net', type=str,

Re: [MoM] deepnano getting info from maintainer

Hi Andreas, What exactly did you plan in connection with the poretools package? In deepnano at debian/deepnano-data-files/test_data/ , there are 3 gz files. These files are copied from poretools source. Thanks to Afif, poretools-data package is currently present in sid. So we can remove these

Re: [MoM] deepnano getting info from maintainer

Hi, sorry, left this project alone for close to three monthes despite promising to have a look. The preparation of Squeeze got my full interest. but now I had a look. On Sat, Dec 17, 2016 at 12:55:35AM -0800, Afif Elghraoui wrote: > Hi, Çağrı, > > على الجمعـة 16 كانون الأول 2016 ‫21:06، كتب

Re: [MoM] deepnano getting info from maintainer

Hi Çağrı, On Sat, Dec 17, 2016 at 08:06:00AM +0300, Çağrı ULAŞ wrote: > > I push some changes for deepnano. Used a few poretools data for the > deepnano-data because poretools use pybuild for packaging. When I create > new package in control file (for split packaging) poretools package created >

Re: [MoM] deepnano getting info from maintainer

Hi, Çağrı, على الجمعـة 16 كانون الأول 2016 ‫21:06، كتب Çağrı ULAŞ: > I push some changes for deepnano. Used a few poretools data for the > deepnano-data because poretools use pybuild for packaging. When I create > new package in control file (for split packaging) poretools package > created with

Re: [MoM] deepnano getting info from maintainer

Hi Andreas, I push some changes for deepnano. Used a few poretools data for the deepnano-data because poretools use pybuild for packaging. When I create new package in control file (for split packaging) poretools package created with empty package. I dont want to change the way this package

Re: [MoM] deepnano getting info from maintainer

Hi Çağrı, any news? Kind regards Andreas. On Fri, Dec 02, 2016 at 12:47:23AM +0300, Çağrı ULAŞ wrote: > Hi Andreas, > > I already started to make poretools-data package. Had to make some > practice on split packaging . It's almost done. When I finished > I will upload them both. > >

Re: [MoM] deepnano getting info from maintainer

Hi Andreas, I already started to make poretools-data package. Had to make some practice on split packaging . It's almost done. When I finished I will upload them both. Regards. 2016-12-01 16:00 GMT+03:00 Andreas Tille : > Hi Çağrı, > > I wonder whether Afif's hint how to get

Re: [MoM] deepnano getting info from maintainer

Hi Çağrı, I wonder whether Afif's hint how to get the example files might have been helpful for you. I admit I'm not keen to stick to the monthly boundaries of the MoM projects but if deepnano should make it into stretch we need to hurry up a bit. Kind regards Andreas. On Wed, Nov 16,

Re: [MoM] deepnano getting info from maintainer

Hello, على الأربعاء 16 تشرين الثاني 2016 ‫01:50، كتب Çağrı ULAŞ: > > I finally find fast5 files from poretools which is an utility for > converting fast5 to fasta/fastq file. There are fast5 examples on > poretools' github page. Is there any thing we need to specify for this > data in debian

Re: [MoM] deepnano getting info from maintainer

Hi Andreas, I finally find fast5 files from poretools which is an utility for converting fast5 to fasta/fastq file. There are fast5 examples on poretools' github page. Is there any thing we need to specify for this data in debian directory? Regards 2016-11-12 1:01 GMT+03:00 Andreas Tille

Re: [MoM] deepnano getting info from maintainer

Hi, On Fri, Nov 11, 2016 at 08:34:15PM +0200, Çağrı ULAŞ wrote: > Working on autopkgtest but I have issues with deepnano. There are no man > pages or example files I found. Did you tried -h/--help options that might be used with help2man? > Only bitbucket page have a basic usage but > this is

Re: [MoM] deepnano getting info from maintainer

Ping? Usually the mentor should require more frequents (at best daily reports). I failed in beeing that strict but to get the package ready at the end of the month we should increase the frequency of communication. Kind regards Andreas. On Thu, Oct 27, 2016 at 08:23:24AM +0200, Andreas

Re: [MoM] deepnano getting info from maintainer

Hi Çağrı, On Thu, Oct 27, 2016 at 03:44:19AM +0300, Çağrı ULAŞ wrote: > Sorry for delayed reply. I filed an ITP but I cant get how to track it. It > said: > > If you want to provide additional information, please wait to receive the > > bug tracking number via email, ... > > > > but I did not

Re: [MoM] deepnano getting info from maintainer

Hi Andreas, Sorry for delayed reply. I filed an ITP but I cant get how to track it. It said: If you want to provide additional information, please wait to receive the > bug tracking number via email, ... > but I did not get any email. Is this may take time? What should I do to know is it

Re: [MoM] deepnano getting info from maintainer

Hi Çağrı, On Thu, Oct 20, 2016 at 03:17:22PM +0300, Çağrı ULAŞ wrote: > I try to reach Vlado Boza (deepnano's maintainer) from bitbucket but he has > not reply yet. If you contacted the maintainer vie e-mail please always CC this list. It would be nice to bounce your e-mail you've sent or send