Re: ongoing slepc/petsc transition

2012-03-08 Thread Julien Cristau
On Sat, Feb 25, 2012 at 23:51:12 -0500, Adam C Powell IV wrote: In particular, it's impossible to install hdf5-tools and libhdf5-*mpi-dev at the same time, as is required to build a handful of reverse-depends [3]. This should be fixed now in hdf5 1.8.8-9. Cheers, Julien -- Julien Cristau

Re: ongoing slepc/petsc transition

2012-03-05 Thread Adam C Powell IV
On Wed, 2012-02-29 at 11:42 +0100, Julien Cristau wrote: On Mon, Feb 13, 2012 at 15:05:00 -0500, Adam C Powell IV wrote: Ready to transition: mumps, petsc, slepc, hdf5 -- not sure why these didn't go into testing this past weekend, they should all be ready. mumps and hdf5 have now

Re: ongoing slepc/petsc transition

2012-03-05 Thread Julien Cristau
On Mon, Mar 5, 2012 at 16:28:25 -0500, Adam C Powell IV wrote: On Wed, 2012-02-29 at 11:42 +0100, Julien Cristau wrote: On Mon, Feb 13, 2012 at 15:05:00 -0500, Adam C Powell IV wrote: Ready to transition: mumps, petsc, slepc, hdf5 -- not sure why these didn't go into testing this

Re: ongoing slepc/petsc transition

2012-03-05 Thread Adam C Powell IV
On Mon, 2012-03-05 at 22:40 +0100, Julien Cristau wrote: On Mon, Mar 5, 2012 at 16:28:25 -0500, Adam C Powell IV wrote: On Wed, 2012-02-29 at 11:42 +0100, Julien Cristau wrote: On Mon, Feb 13, 2012 at 15:05:00 -0500, Adam C Powell IV wrote: Ready to transition: mumps, petsc,

Re: ongoing slepc/petsc transition

2012-03-05 Thread Julien Cristau
On Mon, Mar 5, 2012 at 17:03:51 -0500, Adam C Powell IV wrote: Oh dear. Do we need to do this for every reverse-depends package in order for the whole thing to transition? Yes. If you have a list of debs a single bug probably works though. Cheers, Julien signature.asc Description:

Re: ongoing slepc/petsc transition

2012-02-29 Thread Julien Cristau
On Mon, Feb 27, 2012 at 09:20:44 -0500, Adam C Powell IV wrote: On Mon, 2012-02-27 at 11:15 +0100, Julien Cristau wrote: On Sat, Feb 25, 2012 at 23:51:12 -0500, Adam C Powell IV wrote: That said, the HDF5 transition seems a bit premature. There are some fundamental changes which have

Re: ongoing slepc/petsc transition

2012-02-29 Thread Julien Cristau
On Mon, Feb 13, 2012 at 15:05:00 -0500, Adam C Powell IV wrote: Ready to transition: mumps, petsc, slepc, hdf5 -- not sure why these didn't go into testing this past weekend, they should all be ready. mumps and hdf5 have now transitioned. For petsc/slepc, they either need to build again on

Re: ongoing slepc/petsc transition

2012-02-27 Thread Julien Cristau
On Sat, Feb 25, 2012 at 23:51:12 -0500, Adam C Powell IV wrote: That said, the HDF5 transition seems a bit premature. There are some fundamental changes which have broken a couple of its reverse-depends, which is one reason so many packages needed to be removed from testing in order to

Re: ongoing slepc/petsc transition

2012-02-27 Thread Adam C Powell IV
On Mon, 2012-02-27 at 11:15 +0100, Julien Cristau wrote: On Sat, Feb 25, 2012 at 23:51:12 -0500, Adam C Powell IV wrote: That said, the HDF5 transition seems a bit premature. There are some fundamental changes which have broken a couple of its reverse-depends, which is one reason so many

Re: ongoing slepc/petsc transition

2012-02-26 Thread Sylvestre Ledru
Le samedi 25 février 2012 à 23:51 -0500, Adam C Powell IV a écrit : In particular, it's impossible to install hdf5-tools and libhdf5-*mpi-dev at the same time, as is required to build a handful of reverse-depends [3]. There's no reason the MPI and non-MPI shared libs should conflict.

Re: ongoing slepc/petsc transition

2012-02-26 Thread Kamaraju S Kusumanchi
Adam C Powell IV wrote: I think the first step is to complete the mumps transition [1] for which coinor-ipopt seems to be the main obstacle, with an RC bug [2]. [1] http://release.debian.org/transitions/html/mumps.html [2] http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=659898 I am

Re: ongoing slepc/petsc transition

2012-02-25 Thread Anton Gladky
Hello, is there a chance to get petsc in testing in a near future? gmsh was removed from wheezy because of petsc. Thanks. Anton -- To UNSUBSCRIBE, email to debian-science-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive:

Re: ongoing slepc/petsc transition

2012-02-25 Thread Cyril Brulebois
Hi, Anton Gladky gladky.an...@gmail.com (25/02/2012): is there a chance to get petsc in testing in a near future? gmsh was removed from wheezy because of petsc. as explained by Julien in [1], we had to remove it to let hdf5 go forward. If you need any help to get petsc back into testing,

Re: ongoing slepc/petsc transition

2012-02-25 Thread Adam C Powell IV
Hello Anton, On Sat, 2012-02-25 at 15:41 +0100, Cyril Brulebois wrote: Hi, Anton Gladky gladky.an...@gmail.com (25/02/2012): is there a chance to get petsc in testing in a near future? gmsh was removed from wheezy because of petsc. as explained by Julien in [1], we had to remove it to

Re: ongoing slepc/petsc transition

2012-02-14 Thread trophime
On Mon, 2012-02-13 at 22:41 +0100, Anton Gladky wrote: A new gmsh was just uploaded, not sure how it will affect things... petsc is not in BD of the last 2 uploads of gmsh. There is a FTBFS, requires fixing. I just tried on amd64. Newest gmsh builds fine with petsc/slepc 3.2 By the way,

Re: ongoing slepc/petsc transition

2012-02-14 Thread Cyril Brulebois
Adam C Powell IV hazel...@debian.org (13/02/2012): Writing in with an update: Thanks. Ready to transition: mumps, petsc, slepc, hdf5 -- not sure why these didn't go into testing this past weekend, they should all be ready. Not quite: http://release.debian.org/transitions/html/hdf5.html

Re: ongoing slepc/petsc transition

2012-02-14 Thread Sylvestre Ledru
Le mardi 14 février 2012 à 12:15 +0100, Cyril Brulebois a écrit : Adam C Powell IV hazel...@debian.org (13/02/2012): Writing in with an update: Thanks. Ready to transition: mumps, petsc, slepc, hdf5 -- not sure why these didn't go into testing this past weekend, they should all be

Re: ongoing slepc/petsc transition

2012-02-14 Thread Adam C Powell IV
On Tue, 2012-02-14 at 12:15 +0100, Cyril Brulebois wrote: Adam C Powell IV hazel...@debian.org (13/02/2012): Writing in with an update: Thanks. Ready to transition: mumps, petsc, slepc, hdf5 -- not sure why these didn't go into testing this past weekend, they should all be ready.

Re: ongoing slepc/petsc transition

2012-02-13 Thread Adam C Powell IV
Writing in with an update: On Thu, 2012-01-26 at 14:59 +0100, Cyril Brulebois wrote: Adam C Powell IV hazel...@debian.org (26/01/2012): On Tue, 2012-01-24 at 00:51 +0100, Cyril Brulebois wrote: That means one “OK-able” package, one “oops-broken-for-a-long-while” package, and several

Re: ongoing slepc/petsc transition

2012-02-13 Thread Anton Gladky
A new gmsh was just uploaded, not sure how it will affect things... petsc is not in BD of the last 2 uploads of gmsh. There is a FTBFS, requires fixing. By the way, gmsh is now using oce instead of opencascade. Anton 2012/2/13 Adam C Powell IV hazel...@debian.org: Writing in with an

Re: ongoing slepc/petsc transition

2012-01-26 Thread Adam C Powell IV
On Tue, 2012-01-24 at 00:51 +0100, Cyril Brulebois wrote: Adam C Powell IV hazel...@debian.org (23/01/2012): deal.II detects the PETSc version and acts accordingly, I believe 7.1.0 will work through 3.2. I need to work on upgrading from 7.0.0 to 7.1.0. […] Illuminator has major

Re: ongoing slepc/petsc transition

2012-01-26 Thread Cyril Brulebois
Adam C Powell IV hazel...@debian.org (26/01/2012): On Tue, 2012-01-24 at 00:51 +0100, Cyril Brulebois wrote: That means one “OK-able” package, one “oops-broken-for-a-long-while” package, and several “unknown-status” packages. To keep everyone as testing candidates until this transition is

Re: ongoing slepc/petsc transition

2012-01-23 Thread Adam C Powell IV
Hello Julian, On Sat, 2012-01-21 at 16:49 +0100, Julien Cristau wrote: Hi, it seems there's currently a move from petsc and slepc 3.1 to 3.2 in sid. In addition to the library package names changing, presumably because the new versions are not binary-compatible, the devel package were

Re: ongoing slepc/petsc transition

2012-01-23 Thread Johannes Ring
On Mon, Jan 23, 2012 at 11:49 PM, Adam C Powell IV hazel...@debian.org wrote: Can't speak for the others (dolfin, feel++, gmsh). DOLFIN 1.0.0 works with PETSc/SLEPc 3.2, only minor changes are needed in the Debian files. I can make a new upload soon. Johannes -- To UNSUBSCRIBE, email to