On Thu, Jan 12, 2006 at 11:19:57AM -0500, Kevin B. McCarty wrote :
# apt-get build-dep root
Reading package lists... Done
Building dependency tree... Done
Package libqt3-dev is not available, but is referred to by another package.
This may mean that the package is missing, has been
On Sun, Jan 15, 2006 at 11:49:27AM +0100, Frederic Lehobey wrote :
I tried this on powerpc (in a sid pbuilder). It fails (log attached)
because the package maxdb (a dependency) fails to compile on anything
but i386 and ia64:
Indeed, and there is a wishlist bug on this subject:
On Sat, Jan 28, 2006 at 10:34:47PM +0100, Steffen Möller wrote :
Wouldn't be useful to create a webpage like those
at http://www.debian.org/devel/debian-med/?
Of course, actually systems biology inherit science more than medicine.
debian-science should have its own webpage, shouldn't
On Mon, Jan 30, 2006 at 07:27:13AM +0100, Andreas Tille wrote :
Well, several months ago I suggested that we should start building such
web pages automatically and started some very basic code (which is far from
beeing usable and no chance of continuing this for some further months).
The
Dear all,
I was wondering wether there was a template for letters in which one
signals to upstream developpers that their software have no licence, and
explains briefly the differences between GPL, BSD, public domain and no
licence.
If not, I will try to write one specific for academic
On Sun, Feb 12, 2006 at 10:08:39AM -0500, Justin Pryzby wrote :
undocumented.7 manpages are now discouraged, I think. So just write a
real manpage, not just a minimal one, or otherwise do the best you
can, forward it upstream, hope it gets included, and hope people
improve it, too.
Hi,
I
On Sat, Mar 04, 2006 at 11:23:47AM -0500, Justin Pryzby wrote :
grep-dctrl -n -s Package -F Build-Depends-Indep docbook-to-man (bzcat
/var/cache/apt/Sources.bz2)
Hi,
Well, I do not have a Sources.bz2 file in my /var/cache/apt/
directory...
Also, I welcome comments on the contents of
On Thu, Mar 09, 2006 at 08:33:59AM -0700, Ranjan Grover wrote :
From the error message below it seems that you don't have libgtkglext1
Hi, I intalled libgtkglext1-dev, but the compilation still fails. I
updated and bziped the build log on my website.
On Sat, Mar 11, 2006 at 04:33:34PM -0700, Ranjan Grover wrote :
Hi, I intalled libgtkglext1-dev, but the compilation still fails. I
updated and bziped the build log on my website.
http://charles.plessy.org/debian/gwyddion_build-log.txt.bz2
Looks like you need to apt-get install
On Thu, Mar 16, 2006 at 02:07:49PM +0900, Charles Plessy wrote :
PS: I wanted to ask why linda and lintian complained about the menu
entry in Apps/Sciences, but I just understood why: I copied the
behaviour of NJpolt, Kalzium and Kstars, which is wrong, it should be
Apps/Science
, written by Burkhard Morgenstern and Said Abdeddaim.
I suspect that one of the copyright owners gives its rights to the other
one, but which one ?
Best regards,
PS : I have uploaded the package on mentors.debian.org.
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for
writing manpages in my packages (and scientific software very often lack
manpages).
(any general comment on the manpage is also welcome. It was generated by
cut-and-paste from the manual, hence the LGPL licence, which is the one
of the whole dialign sources).
Have a nice day,
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On Thu, Apr 20, 2006 at 01:26:28AM +0200, Daniel Leidert wrote :
ingrid-mode on
[..]
Forget Debian's docbook-xsl package. It's hopelessly outdated Use the
current docbook-xsl snapshots instead (the upcoming 1.70.0 version).
JFYI: http://docbook.sourceforge.net/snapshots/
Thanks a lot.
On Thu, Apr 20, 2006 at 01:21:33AM +0200, Daniel Leidert wrote :
I would further not use:
addressdhemail;/address
author
dhfirstname;
dhsurname;
/author
Hi,
Thanks a lot, it solved my problem. I was using the template from
dh_make. Shall I file a bug ?
Instead use the sample
Dear all,
I have packaged recently kalign, which consists in only one binary.
There is a sister program, kalignvu, which is distributed in a separate
tar archive by the upstream author, and which is intended to work with
kalign (although it could be used with other alignment programs).
Now I am
Dear all,
Here is my latest ITP, once again for a multiple alignment software. It
may be the last one for them moment, as the other software are either
non-free or non-trivial to package
(http://wiki.debian.org/DebianSequenceAnalysis)
Best,
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,
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NM application on hold until october 2006
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/clustalw.html
Can some DD help clustalw to get back into Etch as we still have the
opportunity ? I just entered the NM queue and therefore can not do this
kind of work by myself.
Thank you so much in advance! Have a nice day,
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be a better list than
debian-devel.
PPS: I would bet that half of the architectures on which clustalw is
missing are architectures on which nobody uses Clustal W or Clustal X,
but this is another story...
Have a nice day,
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do not need:
install -m 644 debian/digitizer.1
$(CURDIR)/debian/engauge-digitizer/usr/share/man/man1
- It you do not provide examples, then you do not need to run
dh_installexamples.
Good luck for your sponsor hunt!
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the package is released,
so that we add it to our metapackages.
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Dear all,
I just found this open access journal. They did not publish many
articles yet, but you may be interested to subscribe to email alerts...
http://www.scfbm.org/
Have a nice day,
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using dpkg-architecture in debian/rules.
http://mirror.phy.bnl.gov/debian-root/
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Damián,
I think that you can safely make debian-science-bio depend on med-bio
and med-bio-dev only. Basic biology is part of Debian Med as
preclinical research.
In addition to the suggested packages, I think that a
debian-science-bibliography would be a must.
Have a nice day,
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Le Fri, Feb 23, 2007 at 12:34:48AM -0600, [EMAIL PROTECTED] a écrit :
What's the licensing on those things?
http://dtd.nlm.nih.gov/publishing/2.0/
Public domain:
http://www.nlm.nih.gov/news/electronic_archiving.html
Have a nice day,
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Wako
:
http://lists.debian.org/debian-science/2007/02/msg00072.html
Merci pour tout, et bonne journée,
-- Charles Plessy, Wako, Saitama, Japon, équipe d'empaquetage de debian-med.
Le Wed, Feb 28, 2007 at 11:27:56AM +0100, Thijs Kinkhorst a écrit :
Hi Charles,
On Wed, 2007-02-28 at 19:20 +0900
/apt/lists/borex.princeton.edu_%7ekmccarty_dists_sid_cernlib-2006_binary-powerpc_Packages)
- stat (2 No such file or directory)
By the way, it would have made it simpler if you signed the archive with
your debian key which is in the keyring.
Have a nice day,
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http
line and keeping the deb-src line also gets rid
of the error.
For the apt-secure beahviour, I think that you are right, it finally
does not make any difference if you use your DD key or not.
I will try to build cernlib on powerpc this evening.
Have a nice day,
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http
:
http://wiki.debian.org/DebianScienceBibliography
http://wiki.debian.org/DebianSciencePublishing
Have a nice day
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Le Wed, Jun 27, 2007 at 08:34:06PM -0400, Ricardo Yanez a écrit :
Le Wed, Jun 27, 2007 at 01:45:31PM -0400, Ricardo Yanez a écrit :
Hi list,
I have a whole bunch of Mac Pros at work
Dear Ricardo,
you may have more feedback on [EMAIL PROTECTED]
You're right, the debian-science
Bonjour,
l'association nationale des docteurs (ANDèS) organise samedi prochain
une Matinée à Paris.
-- Charles Plessy, Wakō, Saitama.
- Forwarded message -
Bonjour,
L'ANDèS - l'association française des docteurs - vous invite à sa prochaine
Matinée consacrée au :
« Recrutement des
that the entry would appear in the `Other' category, which
is not what we want.
Have a nice day,
PS: there is a tool for checking .desktop files,
`desktop-file-validate'.
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to finish the work and make
bibus an official Debian package.
https://sourceforge.net/tracker/?func=detailatid=657832aid=1913312group_id=110943
By the way, the packager would probably have to help solving that bug...
Have a nice day,
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informed: I would like to add a link
to your patch and your discussion on the summary on wiki.d.o.
http://wiki.debian.org/ExtraMenus
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about sending a link on -devel inviting interested developpers to
check to their mail-list archives or bugzilla when Research will have
been proposed as a new mail category?
By the way, Jordan, do you need some help ?
Have a nice day,
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Unfortunately, there are many good application, so I am not sure that
the biological data manager will be funded this year.
Have a nice day,
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Hi all,
I just read about gPapers in Nature this morning:
http://gpapers.org/
I definitely have no time to package it, nor have enough knowledge of
Python. But if somebody could do it, I am sure that it would be a great
addition to Debian.
Have a nice day,
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http
in the
manuscript by the main writer.
Have a nice day,
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if
upstream is planning to implement that kind of feature ?
Have a nice day,
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...
I have added a note in the Debian-Med policy.
http://debian-med.alioth.debian.org/docs/policy.html#id250567
Have a nice day,
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Le Fri, May 09, 2008 at 12:09:28PM +0200, David Bremner a écrit :
Charles Subversion. So far, the ability to do repository-wide
Charles changes was useful to us, as well as the possibility to
Charles do partial checkouts if needed.
Well, I am most certainly not a git expert. But
that it could be a good idea, as a website like
debian-science.alioth.debian.org would be more meaningful than
pkg-science.alitoth.debian.org.
(consider this as sponsoring if you need)
Have a nice day,
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Le Tue, May 20, 2008 at 08:23:42AM +0200, Andreas Tille a écrit :
For instance I remember that we first had
DM-Upload-Allowed: Yes
in many control files. It turned out that this was case sensitive and
so it was changed to
DM-Upload-Allowed: yes
automatically in the whole
. For
instance, math, electronics, gnome, kde, libs all seem logical as
well.
Hi Jordan,
Actually, there can be a Section field for the source and the binary
packages. Maybe that can solve the problem ?
Have a nice day,
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Wakō, Saitama, Japan
Le Sat, Jun 14, 2008 at 11:59:27AM -0500, Jordi Gutiérrez Hermoso a écrit :
On 14/06/2008, Jordi Gutiérrez Hermoso [EMAIL PROTECTED] wrote:
So this is what needs to be replaced?
http://www.cs.cmu.edu/~quake/triangle.html
So I'm thinking that it's not a bad idea to first ask if he's
such as maxima.
Am I missing something, or packages can't be in more than one category/task
in
this system?
Hi Felipe,
Packages can definitely go in as many tasks as want. Of course, having
too much redundant tasks can discourage users to chose us.
Have a nice day,
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Debian
Le Sat, Jul 19, 2008 at 06:42:33PM +0100, Chris Walker a écrit :
Before I go much further, how do people see the role of the wiki - and
in particular the individual subject pages. At the moment many of
them are out of date and incomplete.
Hi Chris,
Now that we have nice autogenerated pages
Le Sun, Jun 29, 2008 at 07:03:58PM +0100, Chris Walker a écrit :
The debtags available don't seem to have quite enough granularity -
but perhaps I've missed something - so I've knocked up a very
incomplete list of sections that packages might drop into.
Hi Chris,
If I understand correctly,
Le Thu, Jul 24, 2008 at 02:30:04PM +0100, Chris Walker a écrit :
Is kst [A KDE application used for displaying scientific data] incorrectly
tagged?
In my opinion, yes. The drawback with Debtags is that tagging is
anonymous, so we can't discuss with the person who tagged kst
Field::Chemistry.
will draft one for Lenny this month.
Have a nice day,
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Debian Med packaging team,
Tsurumi, Kanagawa, Japan
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access have difficulties to access non-free and contrib packages.
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.
The format of /usr/doc/package/references could be a popular one, for
instance BibTeX, if it allows cross references to other systems like
DOI, PubMed, ...)
Have a nice day,
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...
When we will have enough references, having a debhelper script will
definitely be a nice enhancement. I also see it as a long term goal, as
it will take one release cycle to have it in Stable. Using it before can
complicate user backports.
Have a nice day,
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Debian Med
and follow their advice ?
Have a nice day,
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well. We probably will have to make a wishlist bug (with patch?)
to add a new section to Doc-Base.
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not include them?
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to package his program.
Have a nice day,
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lists can sink a lot of time. I actually talk with
experience:
wiki.debian.org also contains long lists of prospective packages that I do not
update anymore.
http://wiki.debian.org/DebianScience/Biology
Do you think that we can find synergies on common goals?
Have a nice day,
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Le Mon, Dec 15, 2008 at 02:05:09PM -0200, Felipe Figueiredo a écrit :
On Wednesday 03 December 2008 01:59:01 Charles Plessy wrote:
Le Wed, Dec 03, 2008 at 01:16:25AM -0200, Felipe Figueiredo a écrit :
Are there any plans to also package Dotur?
http://schloss.micro.umass.edu/software
Le Tue, Dec 16, 2008 at 02:34:54AM +0900, Charles Plessy a écrit :
Le Mon, Dec 15, 2008 at 02:05:09PM -0200, Felipe Figueiredo a écrit :
On Wednesday 03 December 2008 01:59:01 Charles Plessy wrote:
Le Wed, Dec 03, 2008 at 01:16:25AM -0200, Felipe Figueiredo a écrit :
Are there any plans
://lists.debian.org/debian-devel/2008/12/msg00442.html
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I would like to take the opportunity to thank Manuel for his work. I am sure
that the group policy he prepares will increase the long-term sustainability of
the packaging effort made on Alioth to provide programs for the Debian Science
blend !
Have a nice day,
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Debian Med
package installed.
The upload would close the RFP/ITP bug #470887, opened by Charles Plessy.
(Charles, would you mind taking a look and checking, whether bibus now works
for you?)
Dear Jan,
I have checked and uploaded your package, after a few nitpick modifications of
debian/copyright. To make
it updated.
Dear Chen-Tse,
how about maintaining the libsvm source within the debian-science packaging
project ? It will probably help you to find sponsors.
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There are SVN and git repositories on Alioth, along with a group:
https://alioth.debian.org/projects/debian-science/
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lib/adsabs_journals.c, listed in debian/copyright, does
not exist anymore, and debian/bibutils.dbk was moved to the parent directory.
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that
will give commit acces to each other team's repository.
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can gain write access to collab-maint by joining the group.
(DDs have write access by default so they do not need).
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-matplotlib reveals other potential example
providers.
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to the Debian archive packages from a
cran2deb repository without altering them (or maybe after a rebuild if they are
old).
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Le Sat, Aug 01, 2009 at 11:29:18PM +0900, Charles Plessy a écrit :
I think that the issue of managing package metadata goes beyond homepage and
registration, I propose to start a discussion on the subject on debian-devel,
and to fall back on using the debian/control file if this discussion
as groups:
ple...@alioth:~$ getfacl debian-med
# file: debian-med
# owner: scm-gforge
# group: debian-med
user::rwx
group::rwx
other::r-x
I never used ACLs before, so I do not know if it would require the intervention
of an Alioth admin or not…
Have a nice day,
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day,
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package to remove a similar clause, by referring to the following essay on the
FSF website: http://www.fsf.org/licensing/essays/bsd.html. Maybe you can give
it a try?
Have a nice day,
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Tsurumi, Kanagawa, Japan
Le Sun, Oct 11, 2009 at 10:58:17PM +0200, Andreas Tille a écrit :
On Sun, Oct 11, 2009 at 08:39:48AM +0900, Charles Plessy wrote:
ACLs can be used to grant reciprocal commit permissions between pkg-scicomp
and
debian-science.
Thanks for this hint. Could you give a pointer how
,
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be very interested to
hear them.
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Le Thu, Nov 05, 2009 at 10:47:24AM +0900, Charles Plessy a écrit :
It would be great to standardise our efforts.
[on distributing BibTeX references].
By the way, does any reader here knows what other distros are doing ?
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Le Mon, Oct 26, 2009 at 04:12:18PM +0100, Andreas Tille a écrit :
On Mon, Oct 26, 2009 at 11:55:32PM +0900, Charles Plessy wrote:
Nevertheless, if there are good reasons to not store monolithic BibTeX
references and use another format or approach, I would be very interested to
hear them
administrators to amend the central information. But this
change can actually be done without uploading.
You can find a little bit more information in the Debian wiki:
http://wiki.debian.org/FtpMaster/Override
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of your package, but
please consider the attached copyright file for improving the current one.
Note that there is probably an anachronism for the Gcdm license, as the
included file seems to predate your contribution to Gcdm. Can you correct
it?
Have a nice day,
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Charles Plessy
Debian Med
Dear all,
I just saw the email about Hadoop on the debian-science mailing list, so I
forward this related RFS for those who do not read debian-mentors.
Have a nice day,
-- Charles Plessy
Le Tue, Mar 23, 2010 at 08:56:09PM -0430, Miguel Landaeta a écrit :
Hello mentors,
I am looking
://wiki.debian.org/getData
Have a nice day,
--
Charles Plessy
Debian Med packaging team
Tsurumi, Kanagawa, Japan
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package can originate from a signed
official package distributed in the main archive, but does not need a Debian
source package.
Have a nice day,
--
Charles Plessy
Debian Med packaging team
Tsurumi, Kanagawa, Japan
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updating a
backport as difficult as updating Testing during a freeze.
Have a nice day,
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Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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, we can again have lists on
comma-separated packages on folded lines, which allow to review the contents of
a task within a single screen.
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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instead of
field::biology:imaging.
If nobody relies or maintains the biology facet, I would recommend its removal.
Have a nice day,
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Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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completely the system we are building with a BibTeX file.
I hope I can read the whole thread next week and be more constructive.
Cheers,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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Le Sat, Nov 27, 2010 at 07:11:20AM +0900, Charles Plessy a écrit :
In the case of bibliographic references, the needs goes beyond the use with
than bibliographic software. For instance, the Blends web sentinel need only a
part of the information in the BibTeX files, to provide a link
from
debian/references instead. The main obstacle would be to write the code.
Ideally, I would hope to find a Perl module like BibTeX::Parser, but that
accepts a variable or an URL instead of a filehandle.
Have a nice day,
Cheers,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org
rights, and everybody is busy…
http://lists.debian.org/debian-qa/2010/12/msg00018.html
http://lists.debian.org/debian-qa/2011/01/msg00034.html
Cheers,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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page of devscript's “bts” command
as an alternative.
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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the dpkg format 3.0 (quilt). In contrary to what the name suggests,
this will not be done using quilt. See the manual page of dpkg-source
for more details.
Have a nice day,
--
Charles Plessy
Tsurumi, Kanagawa, Japan
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fields, for instance, some original BibTeX
entries used the LaTeX representation of the en dash (--), which I converted to
the proper Unicode character (–), which was later replaced by the ASCII dash
(-) for the sake of normalisation (which is good).
Cheers,
--
Charles Plessy
Debian Med packaging
://wiki.debian.org/UpstreamMetadata.
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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