[cvs] dists/10.7/stable/main/finkinfo/sci pymol-py.info,1.5,1.6

2012-04-12 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv7791 Modified Files: pymol-py.info Log Message: fixes for linking GLEW and freetype219 dependency added Index: pymol-py.info

[cvs] dists/10.4/stable/main/finkinfo/sci pymol-py.info,1.14,1.15

2012-04-12 Thread William Scott
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv7815 Modified Files: pymol-py.info Log Message: fixes for linking GLEW and freetype219 dependency added Index: pymol-py.info

[cvs] dists/10.7/stable/main/finkinfo/sci pymol-py.info, 1.7, 1.8 pymol-py.patch, 1.3, 1.4

2012-04-12 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv26426 Modified Files: pymol-py.info pymol-py.patch Log Message: further fixes to patch file requiring version bump Index: pymol-py.info =

[cvs] dists/10.4/stable/main/finkinfo/sci pymol-py.info, 1.16, 1.17 pymol-py.patch, 1.5, 1.6

2012-04-12 Thread William Scott
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv27948 Modified Files: pymol-py.info pymol-py.patch Log Message: further fixes to patch file requiring version bump Index: pymol-py.info =

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info,1.7,1.8

2012-04-14 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv17871 Modified Files: coot.info Log Message: coot add ldap dependencies and version bump and eliminate multithread install Index: coot.info =

[cvs] dists/10.7/stable/main/finkinfo/utils a2ps.info,NONE,1.1

2012-04-28 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/utils In directory vz-cvs-3.sog:/tmp/cvs-serv32540 Added Files: a2ps.info Log Message: update version and fix for 10.7 --- NEW FILE: a2ps.info --- Package: a2ps Version: 4.14 Revision: 1 Source: http://ftp.gnu.org/gnu/%n/%n-%v.tar.g

[cvs] dists/10.7/stable/main/finkinfo/sci pymol-py.info,1.8,1.9

2012-04-29 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv30239 Modified Files: pymol-py.info Log Message: keep this from looking for apbs in macports directory Index: pymol-py.info =

[cvs] dists/10.4/stable/main/finkinfo/sci pymol-py.info,1.17,1.18

2012-04-29 Thread William Scott
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv30276 Modified Files: pymol-py.info Log Message: keep this from looking for apbs in macports directory Index: pymol-py.info =

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info,1.8,1.9

2012-05-01 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv30381 Modified Files: coot.info Log Message: fix for OXT function and package errors Index: coot.info === RCS file: /cvsroot/

[cvs] dists/10.4/stable/main/finkinfo/sci coot.info,1.33,1.34

2012-05-01 Thread William Scott
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv7190 Modified Files: coot.info Log Message: fixed OTX problem and packaging errors Index: coot.info === RCS file: /cvsroot/fi

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info,1.9,1.10

2012-07-28 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv19722 Modified Files: coot.info Log Message: latest revision by request Index: coot.info === RCS file: /cvsroot/fink/dists/10

[cvs] dists/10.4/stable/main/finkinfo/sci coot.info,1.34,1.35

2012-07-28 Thread William Scott
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv19868 Modified Files: coot.info Log Message: sync with 10.8 branch Index: coot.info === RCS file: /cvsroot/fink/dists/10.4/st

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info, 1.10, 1.11 clipper.info, 1.3, 1.4 ssm.info, 1.3, 1.4 mmdb.info, 1.2, 1.3 gpp4.info, 1.3, 1.4

2012-07-29 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv12205 Modified Files: coot.info clipper.info ssm.info mmdb.info gpp4.info Log Message: coordinate updates and dependencies on gcc47 Index: gpp4.info

[cvs] dists/10.4/stable/main/finkinfo/sci coot.info, 1.35, 1.36 clipper.info, 1.9, 1.10 ssm.info, 1.6, 1.7 mmdb.info, 1.6, 1.7 gpp4.info, 1.7, 1.8

2012-07-29 Thread William Scott
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv15563 Modified Files: coot.info clipper.info ssm.info mmdb.info gpp4.info Log Message: coordinate updates and dependencies on gcc47 Index: gpp4.info

[cvs] dists/10.7/stable/main/finkinfo/sci xia2.info, NONE, 1.1 cctbx.info, NONE, 1.1

2013-08-06 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv864 Added Files: xia2.info cctbx.info Log Message: cctbx reintroduced as dependency for new xia2 package --- NEW FILE: cctbx.info --- Package: cctbx Version: 2013.07.05

[cvs] dists/10.7/stable/main/finkinfo/sci libccp4.info,NONE,1.1

2013-08-06 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv932 Added Files: libccp4.info Log Message: LGPL ccp4 libs to replace older gpp4 and add in symmetry libs --- NEW FILE: libccp4.info --- Package: libccp4 Version: 6.3.1

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info, 1.24, 1.25 coot.patch, 1.1, 1.2 clipper.info, 1.5, 1.6 mmdb.info, 1.6, 1.7 ssm.info, 1.5, 1.6

2013-08-08 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv4957 Modified Files: coot.info coot.patch clipper.info mmdb.info ssm.info Log Message: updates for coot dependencies Index: coot.patch =

[cvs] dists/10.7/stable/main/finkinfo/sci pointless.info, NONE, 1.1 pointless.patch, NONE, 1.1

2013-08-14 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv18193 Added Files: pointless.info pointless.patch Log Message: another pointless update --- NEW FILE: pointless.patch --- diff -ruN pointless-orig/Makefile pointless/Ma

[cvs] dists/10.7/stable/main/finkinfo/sci libccp4.info,1.1,1.2

2013-08-14 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv4412 Modified Files: libccp4.info Log Message: added missing parameter file Index: libccp4.info === RCS

[cvs] dists/10.7/stable/main/finkinfo/sci refmac.info, NONE, 1.1 refmac.patch, NONE, 1.1

2013-08-14 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv4482 Added Files: refmac.info refmac.patch Log Message: reintroduce stand-alone refmac package to augment coot --- NEW FILE: refmac.patch --- diff -ruN refmac-orig/covm

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info,1.25,1.26

2013-08-14 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv6921 Modified Files: coot.info Log Message: fixed url and integrated standalone refmac and consolidated monomer library with refmac Index: coot.info ==

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info, 1.26, 1.27 libccp4.info, 1.2, 1.3

2013-08-27 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv14511 Modified Files: coot.info libccp4.info Log Message: added missing srs files to libccp4 and changed coot dependency accordingly Index: libccp4.info ===

[cvs] dists/10.7/stable/main/finkinfo/sci coot-pre.info, NONE, 1.1 coot-pre.patch, NONE, 1.1

2013-08-27 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv14733 Added Files: coot-pre.info coot-pre.patch Log Message: coot variant to placate those demanding access to the latest features --- NEW FILE: coot-pre.patch --- diff

[cvs] dists/10.7/stable/main/finkinfo/sci tinker.patch, NONE, 1.1 tinker.info, 1.4, 1.5

2013-08-27 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv23783 Modified Files: tinker.info Added Files: tinker.patch Log Message: tinker updates via Jack Howarth --- NEW FILE: tinker.patch --- --- tinker/source/initi

[cvs] dists/10.7/stable/main/finkinfo/sci clipper.patch, NONE, 1.1 clipper.info, 1.6, 1.7

2013-08-28 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv11916 Modified Files: clipper.info Added Files: clipper.patch Log Message: clipper bug fix for cif file i/o bug causing coot to seg fault --- NEW FILE: clipper

[cvs] dists/10.7/stable/main/finkinfo/sci refmac.info,1.1,1.2

2013-08-29 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv32528 Modified Files: refmac.info Log Message: refmac csh script error corrected in profile.d file Index: refmac.info ==

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info, 1.27, 1.28 coot-pre.info, 1.1, 1.2 refmac.info, 1.2, 1.3

2013-09-04 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv15233 Modified Files: coot.info coot-pre.info refmac.info Log Message: fixed cheesy nonrobust symlink hack in coot for refmac monomer lib Index: coot.info =

[cvs] dists/10.4/stable/main/finkinfo/sci rdkit.info,1.3,1.4

2013-09-06 Thread William Scott
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv19860 Modified Files: rdkit.info Log Message: revert to previous revision Index: rdkit.info === RCS file

[cvs] dists/10.7/stable/main/finkinfo/sci rdkit.info,1.7,1.8

2013-09-07 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv11463 Modified Files: rdkit.info Log Message: added dependency on boost1.53.nopython-shlibs Index: rdkit.info ==

[cvs] dists/10.4/stable/main/finkinfo/sci rdkit.info,1.4,1.5

2013-09-07 Thread William Scott
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv11659 Modified Files: rdkit.info Log Message: added dependency on boost1.53.nopython-shlibs Index: rdkit.info ==

[cvs] dists/10.7/stable/main/finkinfo/sci rdkit.info,1.8,1.9

2013-09-08 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv31725 Modified Files: rdkit.info Log Message: changed from clang to gcc to get libSLNParse.1.dylib to build Index: rdkit.info ==

[cvs] dists/10.4/stable/main/finkinfo/sci rdkit.info,1.5,1.6

2013-09-08 Thread William Scott
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv31798 Modified Files: rdkit.info Log Message: build explicitly with gcc to be consistent with change in 10.7 branch Index: rdkit.info ==

[cvs] dists/10.7/stable/main/finkinfo/sci coot-pre.patch,1.1,NONE

2013-09-22 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv4065 Removed Files: coot-pre.patch Log Message: patch now obsolete --- coot-pre.patch DELETED ---

[cvs] dists/10.7/stable/main/finkinfo/sci coot-pre.info,1.2,1.3

2013-09-22 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv4143 Modified Files: coot-pre.info Log Message: update incorporates previous patch Index: coot-pre.info

[cvs] dists/10.7/stable/main/finkinfo/sci coot-pre.info,1.3,1.4

2013-10-03 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv8706 Modified Files: coot-pre.info Log Message: we now need --with-enhanced-ligand-tools to build with rdkit Index: coot-pre.info ==

[cvs] dists/10.4/stable/main/finkinfo/sci coot-pre.info,1.1,1.2

2013-10-03 Thread William Scott
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv15356 Modified Files: coot-pre.info Log Message: fix so it builds once again with rdkit Index: coot-pre.info ===

[cvs] dists/10.7/stable/main/finkinfo/sci pdb2pqr.info,1.4,1.5

2013-10-07 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv24344 Modified Files: pdb2pqr.info Log Message: added missing numpy-py27 dependency Index: pdb2pqr.info

[cvs] dists/10.4/stable/main/finkinfo/sci pdb2pqr.info,1.4,1.5

2013-10-07 Thread William Scott
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv30115 Modified Files: pdb2pqr.info Log Message: added missing dependency on numpy-py27 Index: pdb2pqr.info =

[cvs] dists/10.4/unstable/main/finkinfo/sci coot.info,1.122,1.123

2009-08-17 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv22522 Modified Files: coot.info Log Message: update upstream Index: coot.info === RCS file: /cvsroot/fink/di

[cvs] dists/10.4/unstable/main/finkinfo/sci coot.info,1.123,1.124

2009-08-20 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv13305 Modified Files: coot.info Log Message: added menu item for Zalman LCD monitor stereographics display activation Index: coot.info =

[cvs] dists/10.4/unstable/main/finkinfo/sci mmdb.info,1.5,1.6

2009-08-24 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv20052 Modified Files: mmdb.info Log Message: missing libtool14 BuildDepends Index: mmdb.info === RCS file: /

[cvs] dists/10.4/unstable/main/finkinfo/sci apbs-mpi.info, 1.15, 1.16 apbs.info, 1.19, 1.20

2009-08-26 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv12609 Modified Files: apbs-mpi.info apbs.info Log Message: fixed to coexist per Alan\'s request Index: apbs-mpi.info ==

[cvs] dists/10.4/unstable/main/finkinfo/sci coot.info,1.124,1.125

2009-08-30 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv19025 Modified Files: coot.info Log Message: fix for 10.6 Index: coot.info === RCS file: /cvsroot/fink/dists

[cvs] dists/10.4/unstable/main/finkinfo/sci ccp4.info, 1.50, 1.51 ccp4.patch, 1.19, 1.20

2009-08-30 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv19086 Modified Files: ccp4.info ccp4.patch Log Message: fix for 10.6 to enable mosflm to compile Index: ccp4.info ==

[cvs] dists/10.4/unstable/main/finkinfo/sci viennarna.info,1.9,1.10

2009-08-31 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv14548 Modified Files: viennarna.info Log Message: fixed for 10.6 Index: viennarna.info === RCS file: /cvsroo

[cvs] dists/10.4/unstable/main/finkinfo/sci coot.info,1.125,1.126

2009-08-31 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv28666 Modified Files: coot.info Log Message: upstream bug fixes Index: coot.info === RCS file: /cvsroot/fink

[cvs] dists/10.4/unstable/main/finkinfo/sci coot.info,1.126,1.127

2009-09-04 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv22073 Modified Files: coot.info Log Message: squashed a HUGE bug in real-space refine Index: coot.info === R

[cvs] dists/10.4/unstable/main/finkinfo/sci imosflm-aqua.info, NONE, 1.1 imosflm-aqua.patch, NONE, 1.1 imosflm.patch, NONE, 1.1 mosflm.info, 1.22, 1.23 mosflm.patch, NONE, 1.1 imosflm.info, 1.1, 1.2

2009-09-06 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv21598 Modified Files: imosflm.info Added Files: imosflm-aqua.info imosflm-aqua.patch imosflm.patch mosflm.info mosflm.patch Log Message: mosflm update and

[cvs] dists/10.4/unstable/main/finkinfo/sci mosflm.info,1.23,1.24

2009-09-06 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv9438 Modified Files: mosflm.info Log Message: fix to force 32-bit compilation on 10.6 when appropriate Index: mosflm.info ==

[cvs] dists/10.4/unstable/main/finkinfo/sci pdb2pqr.info, 1.13, 1.14 apbs.info, 1.20, 1.21 apbs-mpi.info, 1.16, 1.17

2009-09-07 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv22847 Modified Files: pdb2pqr.info apbs.info apbs-mpi.info Log Message: fixed for 10.6 32-bit Index: apbs-mpi.info =

[cvs] dists/10.4/unstable/main/finkinfo/sci rnaview.info,1.3,1.4

2009-09-07 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv25846 Modified Files: rnaview.info Log Message: fix for 10.6 32-bit Index: rnaview.info === RCS file: /cvsro

[cvs] dists/10.4/unstable/main/finkinfo/sci chooch.info,1.5,1.6

2009-09-07 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv26070 Modified Files: chooch.info Log Message: fix for 10.6 32-bit Index: chooch.info === RCS file: /cvsroot

[cvs] dists/10.4/unstable/main/finkinfo/sci cgraph.info,1.3,1.4

2009-09-07 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv26187 Modified Files: cgraph.info Log Message: fix for 10.6 32-bit Index: cgraph.info === RCS file: /cvsroot

[cvs] dists/10.4/unstable/main/finkinfo/sci pdb2pqr.info,1.14,1.15

2009-09-07 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv8249 Modified Files: pdb2pqr.info Log Message: fix for 10.6 32-bit Index: pdb2pqr.info === RCS file: /cvsroo

[cvs] dists/10.4/unstable/main/finkinfo/sci pgplot.info,1.11,1.12

2009-09-07 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv12460 Modified Files: pgplot.info Log Message: fix for 10.6 32-bit Index: pgplot.info === RCS file: /cvsroot

[cvs] dists/10.4/unstable/main/finkinfo/sci rnaview.info,1.4,1.5

2009-09-07 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv11048 Modified Files: rnaview.info Log Message: fix for 10.6 32-bit Index: rnaview.info === RCS file: /cvsro

[cvs] dists/10.4/unstable/main/finkinfo/sci mosflm.info,1.24,1.25

2009-09-07 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv14590 Modified Files: mosflm.info Log Message: cleaned up mosflm replaced zsh with bash in CompileScript Index: mosflm.info

[cvs] dists/10.4/unstable/main/finkinfo/sci coot.info,1.127,1.128

2009-09-08 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv13865 Modified Files: coot.info Log Message: fix for 64-bit superimpose gui bug Index: coot.info === RCS fil

[cvs] dists/10.4/unstable/main/finkinfo/sci ccp4.info, 1.51, 1.52 ccp4.patch, 1.20, 1.21

2009-09-08 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv8013 Modified Files: ccp4.info ccp4.patch Log Message: fixes for 32bit 10.6 compatibility and 64-bit code patches from J Howarth Index: ccp4.info ==

[cvs] dists/10.4/unstable/main/finkinfo/sci coot.info,1.128,1.129

2009-09-08 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv11388 Modified Files: coot.info Log Message: more zsh CompileScript removal for 10.6 32-bit compatibility Index: coot.info =

[cvs] dists/10.4/stable/main/finkinfo/languages guile16-goosh.info, 1.4, NONE guile16-gui.info, 1.3, NONE guile16-gtk.info, 1.6, NONE guile16-net-http.info, 1.3, NONE guile16-www.info, 1.3, NONE

2009-09-08 Thread William Scott
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/languages In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv13270 Removed Files: guile16-goosh.info guile16-gui.info guile16-gtk.info guile16-net-http.info guile16-www.info Log Message: delete obsolete guile16 coot depen

[cvs] dists/10.4/stable/main/finkinfo/languages guile18-goosh.info, 1.2, 1.3 guile18-gtk.info, 1.4, 1.5 guile18-gui.info, 1.3, 1.4 guile18-net-http.info, 1.2, 1.3 guile18-www.info, 1.2, 1.3

2009-09-08 Thread William Scott
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/languages In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv13390 Modified Files: guile18-goosh.info guile18-gtk.info guile18-gui.info guile18-net-http.info guile18-www.info Log Message: more zsh CompileScript removal fo

[cvs] dists/10.4/stable/main/finkinfo/sci mosflm-small.info,1.3,NONE

2009-09-08 Thread William Scott
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv13518 Removed Files: mosflm-small.info Log Message: delete obsolete package --- mosflm-small.info DELETED --- --

[cvs] dists/10.4/unstable/main/finkinfo/languages tkimg.info, 1.4, 1.5 guile18-goosh.info, 1.4, 1.5 guile18-gtk.info, 1.11, 1.12 guile18-gui.info, 1.4, 1.5 guile18-net-http.info, 1.4, 1.5 guile18-www.

2009-09-08 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv10332 Modified Files: tkimg.info guile18-goosh.info guile18-gtk.info guile18-gui.info guile18-net-http.info guile18-www.info Log Message: more zsh CompileScri

[cvs] dists/10.4/stable/main/finkinfo/sci ccp4.info, 1.8, NONE ccp4.patch, 1.1, NONE mosflm.info, 1.3, NONE

2009-09-08 Thread William Scott
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv19738 Removed Files: ccp4.info ccp4.patch mosflm.info Log Message: deleted obsolte packages --- ccp4.info DELETED --- --- mosflm.info DELETED --- --- ccp4.patch DELETED ---

[cvs] dists/10.4/stable/main/finkinfo/sci ccp4.info, 1.9, 1.10 ccp4.patch, 1.2, 1.3 imosflm-aqua.info, NONE, 1.1 imosflm-aqua.patch, NONE, 1.1 mosflm.info, 1.4, 1.5 mosflm.patch, NONE, 1.1

2009-09-08 Thread William Scott
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv19986 Added Files: ccp4.info ccp4.patch imosflm-aqua.info imosflm-aqua.patch mosflm.info mosflm.patch Log Message: ccp4 and related packages that are current and buil

[cvs] dists/10.4/unstable/main/finkinfo/sci ccp4.info,1.52,1.53

2009-09-08 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv21930 Modified Files: ccp4.info Log Message: commented out debugging line Index: ccp4.info === RCS file: /cv

[cvs] dists/10.4/stable/main/finkinfo/sci ccp4.info,1.10,1.11

2009-09-08 Thread William Scott
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv22042 Modified Files: ccp4.info Log Message: commented out debugging line Index: ccp4.info === RCS file: /cvsr

[cvs] dists/10.4/unstable/main/finkinfo/sci molmol.info,1.19,1.20

2009-09-10 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv2847 Modified Files: molmol.info Log Message: resumed maintainership Index: molmol.info === RCS file: /cvsro

[cvs] dists/10.4/unstable/main/finkinfo/sci pymol-py.info,1.32,1.33

2009-09-10 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv2945 Modified Files: pymol-py.info Log Message: resumed maintainership Index: pymol-py.info === RCS file: /c

[cvs] dists/10.4/unstable/main/finkinfo/sci gromacs.info,1.15,1.16

2009-09-10 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv3029 Modified Files: gromacs.info Log Message: resumed maintainership Index: gromacs.info === RCS file: /cvs

[cvs] dists/10.4/unstable/main/finkinfo/sci gromacs-mpi.info, 1.16, 1.17

2009-09-10 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv3116 Modified Files: gromacs-mpi.info Log Message: resumed maintainership Index: gromacs-mpi.info === RCS fi

[cvs] dists/10.4/stable/main/finkinfo/sci gromacs-mpi.info, 1.2, 1.3 gromacs.info, 1.2, 1.3 molmol.info, 1.14, 1.15 pymol-py.info, 1.7, 1.8

2009-09-10 Thread William Scott
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv3292 Modified Files: gromacs-mpi.info gromacs.info molmol.info pymol-py.info Log Message: resumed maintainership Index: pymol-py.info

[cvs] dists/10.4/unstable/main/finkinfo/sci gpp4.info, 1.2, 1.3 mmdb.info, 1.6, 1.7 ssm.info, 1.3, 1.4 clipper.info, 1.7, 1.8 coot.info, 1.129, 1.130

2009-09-10 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv16248 Modified Files: gpp4.info mmdb.info ssm.info clipper.info coot.info Log Message: fixed conflicts incosistancy and a few other irritants Index: gpp4.info =

[cvs] dists/10.4/unstable/main/finkinfo/sci gpp4.info,1.3,1.4

2009-09-12 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv32097 Modified Files: gpp4.info Log Message: newer upstream version Index: gpp4.info === RCS file: /cvsroot/

[cvs] dists/10.4/unstable/main/finkinfo/sci coot.info,1.130,1.131

2009-09-14 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv11030 Modified Files: coot.info Log Message: upstream fix for seg-faulting bug on 32-bit version, 64-bit still works Index: coot.info ==

[cvs] dists/10.4/unstable/main/finkinfo/x11 blt-x86_64.patch, 1.1, 1.2 blt-x86_64.info, 1.1, 1.2

2009-09-16 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11 In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv10742 Modified Files: blt-x86_64.patch blt-x86_64.info Log Message: fixes for blt for tcltk8.5 incorporated from gentoo patch Index: blt-x86_64.patch ==

[cvs] dists/10.4/stable/main/finkinfo/sci clipper.info, 1.3, 1.4 coot.info, 1.20, 1.21 gpp4.info, 1.1, 1.2 mmdb.info, 1.2, 1.3 ssm.info, 1.1, 1.2

2009-09-21 Thread William Scott
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv30392 Modified Files: clipper.info coot.info gpp4.info mmdb.info ssm.info Log Message: update for stable coot and dependencies Index: gpp4.info ==

[cvs] dists/10.4/unstable/main/finkinfo/sci coot.info,1.131,1.132

2009-09-21 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv30669 Modified Files: coot.info Log Message: minor version update Index: coot.info === RCS file: /cvsroot/fi

[cvs] dists/10.4/unstable/main/finkinfo/sci gromacs.info,1.16,1.17

2009-09-21 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv31305 Modified Files: gromacs.info Log Message: fixed numerous issues now works for 10.5, 10.6, long PATH values, thanks to Allen Wilter Index: gromacs.info ==

[cvs] dists/10.4/unstable/main/finkinfo/sci coot.info, 1.132, 1.133 gpp4.info, 1.4, 1.5 ssm.info, 1.4, 1.5 mmdb.info, 1.7, 1.8 clipper.info, 1.8, 1.9

2009-09-27 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv9846 Modified Files: coot.info gpp4.info ssm.info mmdb.info clipper.info Log Message: fixes for dependencies recommended by Daniel Macks Index: gpp4.info ==

[cvs] dists/10.4/unstable/main/finkinfo/sci clipper.info,1.9,1.10

2009-09-27 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv10126 Modified Files: clipper.info Log Message: added -e and -v to compilescript Index: clipper.info === RCS

[cvs] dists/10.4/unstable/main/finkinfo/sci coot.info,1.133,1.134

2009-09-27 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv10788 Modified Files: coot.info Log Message: more robust $PATH to aid configure Index: coot.info === RCS fil

[cvs] dists/10.4/unstable/main/finkinfo/sci clipper.info, 1.10, 1.11 gpp4.info, 1.5, 1.6 mmdb.info, 1.8, 1.9 ssm.info, 1.5, 1.6

2009-09-27 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv10389 Modified Files: clipper.info gpp4.info mmdb.info ssm.info Log Message: added GCC:4.0 Index: gpp4.info

[cvs] dists/10.4/unstable/main/finkinfo/sci coot.info,1.134,1.135

2009-09-27 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv11199 Modified Files: coot.info Log Message: hydrogen and stupidity Index: coot.info === RCS file: /cvsroot/

[cvs] dists/10.4/unstable/main/finkinfo/sci imosflm.info, 1.2, 1.3 imosflm.patch, 1.1, 1.2

2009-09-30 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv30125 Modified Files: imosflm.info imosflm.patch Log Message: fixed use of wrong wish Index: imosflm.info ==

[cvs] dists/10.4/unstable/main/finkinfo/sci imosflm.info,1.3,1.4

2009-09-30 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv31016 Modified Files: imosflm.info Log Message: fixed md5sum of changed patch file Index: imosflm.info === R

[cvs] dists/10.4/unstable/main/finkinfo/sci gpp4.info,1.6,1.7

2009-10-02 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv17995 Modified Files: gpp4.info Log Message: version update for gpp4 to include fortran libraries Index: gpp4.info =

[cvs] dists/10.4/unstable/main/finkinfo/sci coot.patch, 1.7, 1.8 coot.info, 1.135, 1.136

2009-10-02 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv8379 Modified Files: coot.info Added Files: coot.patch Log Message: newer revis and cleaned up packaging a bit --- NEW FILE: coot.patch --- diff -ruN coot-0.6-pre-

[cvs] dists/10.4/stable/main/finkinfo/sci gromacs-mpi.info, 1.3, 1.4 gromacs.info, 1.3, 1.4

2009-10-04 Thread William Scott
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv26651 Modified Files: gromacs-mpi.info gromacs.info Log Message: replace with revision that builds Index: gromacs.info ===

[cvs] dists/10.4/unstable/main/finkinfo/sci ccp4.info,1.53,1.54

2009-10-05 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv11685 Modified Files: ccp4.info Log Message: fix for compilation problem on 10.4 that doesn't change package contents for 10.5 or 10.6 Index: ccp4.info ===

[cvs] dists/10.4/stable/main/finkinfo/sci ccp4.info,1.11,1.12

2009-10-05 Thread William Scott
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv11795 Modified Files: ccp4.info Log Message: fix for compilation problem on 10.4 that doesn't change package contents for 10.5 or 10.6 Index: ccp4.info =

[cvs] dists/10.4/unstable/main/finkinfo/sci coot.info,1.136,1.137

2009-10-12 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv7624 Modified Files: coot.info Log Message: update and further cleanup of the package in prep for stable release Index: coot.info ==

[cvs] dists/10.4/unstable/main/finkinfo/sci coot.info,1.137,1.138

2009-10-12 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv16057 Modified Files: coot.info Log Message: use unix find command instead of zsh recursive globbing to avoid haning issue on ppc Index: coot.info

[cvs] dists/10.4/unstable/main/finkinfo/utils a2ps.info,1.8,1.9

2009-10-13 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/utils In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv19512 Modified Files: a2ps.info Log Message: fixed for 10.6 thanks to Peter O\'Gorman Index: a2ps.info ===

[cvs] dists/10.4/stable/main/finkinfo/utils a2ps.info,1.2,1.3

2009-10-13 Thread William Scott
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/utils In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv19760 Modified Files: a2ps.info Log Message: fixed for 10.6 thanks to Peter O\'Gorman Index: a2ps.info === R

[cvs] dists/10.4/stable/main/finkinfo/utils a2ps.info,1.3,1.4

2009-10-13 Thread William Scott
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/utils In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv19844 Modified Files: a2ps.info Log Message: fixed for 10.6 thanks to Peter O\'Gorman adding in Distribution: 10.6 Index: a2ps.info

[cvs] dists/10.4/unstable/main/finkinfo/sci coot.info,1.138,1.139

2009-10-26 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv28047 Modified Files: coot.info Log Message: update version Index: coot.info === RCS file: /cvsroot/fink/dis

[cvs] dists/10.4/unstable/main/finkinfo/sci whatcheck.info, 1.8, 1.9 whatcheck.patch, 1.3, 1.4

2009-10-31 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv14456 Modified Files: whatcheck.info whatcheck.patch Log Message: synced with the ever-changing tarball upstream Index: whatcheck.patch

[cvs] dists/10.4/unstable/main/finkinfo/sci apbs.info,1.21,1.22

2009-11-11 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv24595 Modified Files: apbs.info Log Message: fixed url Index: apbs.info === RCS file: /cvsroot/fink/dists/10

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