Re: [Fink-devel] pymol in 10.7

2011-07-31 Thread Koen van der Drift
Bill, Thanks for this explanation - with this excellent info it only seems logical to include scipy and gcc to the package, no need to make a lite version, as far as I am concerned. Sorry for the noise :) - Koen. On Jul 31, 2011, at 7:21 PM, William G. Scott wrote: Dear Koen et al: The

Re: [Fink-devel] pymol in 10.7

2011-07-30 Thread Koen van der Drift
On Jul 30, 2011, at 5:13 AM, Hanspeter Niederstrasser wrote: On 7/29/2011 9:52 PM, Koen van der Drift wrote: On Jul 29, 2011, at 5:27 PM, Michael Lerner wrote: Newer versions of PyMOL include several modules (scipy, numpy, matplotlib). My understanding is that this was done to make

[Fink-devel] pymol in 10.7

2011-07-29 Thread Koen van der Drift
Hi, I recently switched to Lion, and tried to install pymol through fink. I noticed that the dependency on numpy has been changed into one on scipy. Scipy pulls in a slew of additional dependencies, including gcc46, making it an elaborate install process. As far as I know, there is no need for

Re: [Fink-devel] pymol in 10.7

2011-07-29 Thread Koen van der Drift
PM, Koen van der Drift koenvanderdr...@gmail.com wrote: Hi, I recently switched to Lion, and tried to install pymol through fink. I noticed that the dependency on numpy has been changed into one on scipy. Scipy pulls in a slew of additional dependencies, including gcc46, making

[Fink-devel] unmaintain my packages

2010-07-31 Thread Koen van der Drift
Dear Fink team, Unfortunately, due to time restrictions and other obligations, I am unable to keep maintaining my packages. Feel free to take them over, and/or unmaintain them in cvs. Many thanks, Koen van der Drift

[Fink-devel] how to use gcc43 or greater?

2010-06-29 Thread Koen van der Drift
I'm working on a package that requires gcc43 or greater. How do I define this in the info file? I could use (Build)Depends: gcc43, but if someone already has gcc44 installed, they'll end up with more than one gcc (and a lot of compilation time). The gcc version from Xcode on my system is 4.0.1

Re: [Fink-devel] how to use gcc43 or greater?

2010-06-29 Thread Koen van der Drift
On Tue, Jun 29, 2010 at 2:31 PM, Alexander Hansen alexanderk.han...@gmail.com wrote: Check the linked library contents of your package.  More often than not, it will wind up linked to a library from the gcc4N that you used to build it.  In such a case there is no choice:  you pick a gcc4N and

Re: [Fink-devel] how to use gcc43 or greater?

2010-06-29 Thread Koen van der Drift
And then I guess I use SetCXX=%p/bin/g++-4.N (or whatever the name of the excecutable is), correct? - Koen. On Tue, Jun 29, 2010 at 2:39 PM, Koen van der Drift koenvanderdr...@gmail.com wrote: On Tue, Jun 29, 2010 at 2:31 PM, Alexander Hansen alexanderk.han...@gmail.com wrote: Check

Re: [Fink-devel] how to use gcc43 or greater?

2010-06-29 Thread Koen van der Drift
On Jun 29, 2010, at 3:02 PM, David R. Morrison wrote: I'm pretty sure its just %p/bin/g++-4 (without the .N) -- Dave You are correct. The package I'm working on uses the waf compiler to configure and build the sourcecode. I've added this to the info file: SetCC: %p/bin/gcc-4 SetCXX:

Re: [Fink-devel] libjpeg-shlibs and libjpeg dependencies in your packages!

2010-06-23 Thread Koen van der Drift
On Jun 23, 2010, at 4:40 AM, Martin Costabel wrote: The [262] tells you that there are 262 levels of make running. Either there is an infinite loop (but then this should happen to others, too), or it is a question of parallel make running wild. Do you somehow have your fink tweaked so

Re: [Fink-devel] testing apt and dpkg

2010-06-23 Thread Koen van der Drift
On Jun 22, 2010, at 8:46 PM, Alexander Hansen wrote: I wasn't able to reproduce the apt error on my G4 running 10.5.8 with Xcode 3.1.4--it seemed to build fine. I've posted my build log under http://akhmac.blogdns.net/~hansen/finklogs/apt/ for comparison purposes. Building apt-0.5.4

Re: [Fink-devel] libjpeg-shlibs and libjpeg dependencies in your packages!

2010-06-23 Thread Koen van der Drift
Sjors, Feel free to send me those files if they could help. I have some time tonight (I'm in the US) to test, but after that I am very busy for several days. - Koen. On Wed, Jun 23, 2010 at 9:54 AM, Sjors Gielen mailingl...@dazjorz.com wrote: Op 23 jun 2010, om 14:13 heeft Alexander Hansen

Re: [Fink-devel] testing apt and dpkg

2010-06-23 Thread Koen van der Drift
Continuing in this thread which has the correct subject line. Alas, still no success... I tried the new apt.info from Sjors, added MaxBuildJobs: 1 to fink.conf, reverted fink from HEAD to 0.29.12-41. Still getting the same error. - Koen.

Re: [Fink-devel] libjpeg-shlibs and libjpeg dependencies in your packages!

2010-06-22 Thread Koen van der Drift
On Jun 22, 2010, at 6:06 AM, Sjors Gielen wrote: Do you have a process limit set for your shell? Not that I am aware of. What does 'ulimit -u' say? 266 Does this problem repeat if you build again, with less user processes running concurrently? (The default value for the user

Re: [Fink-devel] libjpeg-shlibs and libjpeg dependencies in your packages!

2010-06-22 Thread Koen van der Drift
On Jun 22, 2010, at 8:39 AM, Alexander Hansen wrote: I've historically resorted to logging out and back in or rebooting when I've had this error. Still get the same error after a reboot. - Koen. -- ThinkGeek

Re: [Fink-devel] sudo apt-get remove question

2010-06-12 Thread Koen van der Drift
On Jun 12, 2010, at 6:40 AM, Martin Costabel wrote: You will probably get the same complaint from apt-get whenever you ask it to do *anything*. It just refuses to work as long as it feels something is unclean in its database. dpkg is much less inhibited, you can use it to --remove

Re: [Fink-devel] data-serializer-pm

2010-06-12 Thread Koen van der Drift
On Jun 11, 2010, at 9:13 AM, Alexander Hansen wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 6/11/10 8:28 AM, Koen van der Drift wrote: Lat night I noticed that my package data-serializer-pm does not install properly, nothing gets installed in /sw/lib/, only stuff in /sw/share

[Fink-devel] data-serializer-pm

2010-06-11 Thread Koen van der Drift
Lat night I noticed that my package data-serializer-pm does not install properly, nothing gets installed in /sw/lib/, only stuff in /sw/share/. I actually noticed it because another package I maintain complaint about a missing data-serializer-pm. Weird, since I've build the other package

Re: [Fink-devel] data-serializer-pm

2010-06-11 Thread Koen van der Drift
On Fri, Jun 11, 2010 at 9:13 AM, Alexander Hansen alexanderk.han...@gmail.com wrote: -BEGIN PGP SIGNED MESSAGE- make: *** No rule to make target `install'.  Stop. (with or without building in maintainer mode), so I have no clue how you got your results. Thanks for testing, Alex.

Re: [Fink-devel] arch: Unknown architecture: powerpc error on PPC

2010-06-07 Thread Koen van der Drift
If anyone wants to fix and/or take over my module-build packages, feel free to do so, I really don't have time right now to dig into this. I took them over a while ago, because they were needed by another package I maintain, but I have not enough knowledge to understand and fix this issue. -

Re: [Fink-devel] arch: Unknown architecture: powerpc error on PPC

2010-06-07 Thread Koen van der Drift
On Jun 7, 2010, at 8:10 PM, Daniel Johnson wrote: On Jun 7, 2010, at 10:56 AM, Koen van der Drift wrote: If anyone wants to fix and/or take over my module-build packages, feel free to do so, I really don't have time right now to dig into this. I took them over a while ago, because

[Fink-devel] How to remove a certain group of packages

2010-06-06 Thread Koen van der Drift
Hi, Is there a way to remove a certain group of packages in fink? For instance, all packages that I maintain, or all installed perlmodules? I can list them: fink list --installed -m 'driftkop' or fink list --installed | grep pm588 But then how to proceed? Thanks, - Koen.

[Fink-devel] abstract method called directly! error

2010-06-06 Thread Koen van der Drift
Hi, I am getting the following error with one of my perlmodules: make test || exit 2 PERL_DL_NONLAZY=1 /usr/bin/perl5.8.8 -MExtUtils::Command::MM -e test_harness(0, 'blib/lib', 'blib/arch') t/*.t t/compat/*.t abstract method called directly! at /sw/src/fink.build/tap-parser-

Re: [Fink-devel] abstract method called directly! error

2010-06-06 Thread Koen van der Drift
On Jun 6, 2010, at 11:13 AM, Daniel Macks wrote: ccording to CPAN search, TAP::Parser is now (not sure as of how recently) part of the Test::Harness distro, and the Tap::Parser docs say the goal of that package was to eventually migrate into Test::Harness. Do we still need a stand-alone

Re: [Fink-devel] How to remove a certain group of packages

2010-06-06 Thread Koen van der Drift
On Jun 6, 2010, at 7:45 AM, Martin Costabel wrote: For example (1 line) sudo dpkg -r --force-all `fink list -i -m 'driftkop' | awk '{print $2}'` Excellent, thanks! - Koen. -- ThinkGeek and WIRED's GeekDad team

[Fink-devel] arch: Unknown architecture: powerpc error on PPC

2010-06-06 Thread Koen van der Drift
Hi, I am trying to update most of my perlmodules to include the -pm5100 variant. For module-build-pm5100, I now get the following error: sudo -u fink-bld [ENV] sh -c/var/tmp/tmp.38.5B2RQl /var/tmp/tmp.0.Ld9wPl + exec + perlversion=5.10.0 + perlexe=perl5.10.0 + '[' 5100 = 5100 ']' +

Re: [Fink-devel] Algorithm::C3 Dependency Loop

2010-06-01 Thread Koen van der Drift
Ben, Please go ahead and add the patch. Can you also add the -5100 variants to your packages sub-exporter-pm and class-inspector-pm? - Koen. On Tue, Jun 1, 2010 at 10:36 AM, Benjamin Reed rangerr...@befunk.com wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Algorithm::C3 BuildDepends

Re: [Fink-devel] gmp build failure

2010-05-10 Thread Koen van der Drift
I'm still getting the same error with the latest version. - Koen. On May 9, 2010, at 10:00 PM, David Fang wrote: I found the following thread on this: http://gmplib.org/list-archives/gmp-bugs/2010-January/001838.html which suggests using the newer xcode's gcc-4.2. What Depends can I

Re: [Fink-devel] gmp build failure

2010-05-10 Thread Koen van der Drift
On May 9, 2010, at 10:00 PM, David Fang wrote: which suggests using the newer xcode's gcc-4.2. What Depends can I specify to enforce this in gmp.info? This worked for me: SetCC: gcc-4.2 SetCXX: g++-4.2 and it builds without errors. - Koen.

Re: [Fink-devel] linker error: ld: library not found for -lcrt1.10.5.o

2010-05-09 Thread Koen van der Drift
On May 8, 2010, at 12:15 PM, Martin Costabel wrote: Koen van der Drift wrote: [] I tried that, and now get the following error instead at the same location: Linking CXX executable massXpert.app/Contents/MacOS/massXpert cd /sw/src/fink.build/massxpert-x11-2.1.0-1001/massxpert-2.1.0/gui

Re: [Fink-devel] linker error: ld: library not found for -lcrt1.10.5.o

2010-05-09 Thread Koen van der Drift
On May 8, 2010, at 12:15 PM, Martin Costabel wrote: Looks like a missing -framework CoreFoundation. No idea who should have brought this in and didn't. Got that sorted out by using: SetLDFLAGS: -Wl,-framework,CoreFoundation -Wl The package builds fine now. - Koen.

[Fink-devel] gmp build failure

2010-05-09 Thread Koen van der Drift
Hi David, A recent update for gmp fails during the build, see the output below. Package manager version: 0.29.99.cvs Distribution version: selfupdate-cvs Sun May 9 20:35:56 2010, 10.5, powerpc hth, - Koen. -- ... /bin/sh ./libtool --mode=link gcc -std=gnu99 -O2

[Fink-devel] linker error: ld: library not found for -lcrt1.10.5.o

2010-05-08 Thread Koen van der Drift
Hi, As posted earlier this week on IRC, I am getting the following linker error: Linking CXX executable massXpert.app/Contents/MacOS/massXpert cd /sw/src/fink.build/massxpert-x11-2.1.0-1001/massxpert-2.1.0/gui / sw/bin/cmake -E cmake_link_script CMakeFiles/massXpert.dir/link.txt --

Re: [Fink-devel] linker error: ld: library not found for -lcrt1.10.5.o

2010-05-08 Thread Koen van der Drift
On May 8, 2010, at 7:59 AM, Martin Costabel wrote: The -isysroot flag. You probably don't have /Developer/SDKs/ MacOSX10.4u.sdk/usr/lib/crt1.10.5.o Unfortunately, cmake is trying successfully to out-bloat the autotools-based build system. In 2.8 they added this -isysroot garbage as

[Fink-devel] package without a tarball

2010-05-05 Thread Koen van der Drift
Hi, I am working on a package that doesn't have a tarball, just a cvs checkout. What's the recommended way to use this for a fink package? I can get the source, compress it myself, and then store it on a fink mirror, I think other packages do that too. If so, where exactly should it go? Thanks,

[Fink-devel] libffi build failure

2010-05-02 Thread Koen van der Drift
This is on Package manager version: 0.29.99.cvs Distribution version: selfupdate-cvs Sun May 2 10:42:27 2010, 10.5, powerpc Thanks, - Koen. Making a new site.exp file... srcdir=`CDPATH=${ZSH_VERSION+.}: cd . pwd`; export srcdir; \ EXPECT=`if [ -f ../../expect/expect ] ; then echo

Re: [Fink-devel] libffi build failure

2010-05-02 Thread Koen van der Drift
Update: this only happens when building in maintainer mode (which I was using for another package that needs libffi). - Koen. On May 2, 2010, at 11:34 AM, Koen van der Drift wrote: This is on Package manager version: 0.29.99.cvs Distribution version: selfupdate-cvs Sun May 2 10:42:27

Re: [Fink-devel] libffi build failure

2010-05-02 Thread Koen van der Drift
On May 2, 2010, at 11:58 AM, Jean-François Mertens wrote: On 02 May 2010, at 17:52, Koen van der Drift wrote: Update: this only happens when building in maintainer mode You mean, 'fink --tests=on rebuild libffi' goes without errors ? No, that fails. As well as 'fink -l -m --build

Re: [Fink-devel] libffi build failure

2010-05-02 Thread Koen van der Drift
On May 2, 2010, at 12:54 PM, Jean-François Mertens wrote: Koen, in the meantime could you check that libffi-3.0.5.info yields correct self-tests for you ? That fails too (using fink --tests=on rebuild libffi-3.0.5): ... WARNING: Couldn't find the global config file. WARNING: Couldn't find

[Fink-devel] problems installing autoconf2.6-2.65-2

2010-05-02 Thread Koen van der Drift
I can't seem to get past installing autoconf2.6-2.65-2, see below. I ran the commands at the end, installed autoconf2.6-2.65-2 manually, but then I keep getting the same output about the inconsistent dependencies. Any suggestions? Thanks, - Koen. ... The following 3 packages will be

Re: [Fink-devel] problems installing autoconf2.6-2.65-2

2010-05-02 Thread Koen van der Drift
On May 2, 2010, at 8:17 PM, Alexander Hansen wrote: The fundamental problem here, as I see it, is that by rights autoconf* should be BuildDependsOnly-style packages which can be swapped out freely, but since automake* carry a Depends: on autoconf, this behavior is defeated. The only way

Re: [Fink-devel] rasmol build error

2010-04-19 Thread Koen van der Drift
Thanks, it works now. - Koen. On Apr 18, 2010, at 9:58 PM, Hanspeter Niederstrasser wrote: On 4/18/10 9:15 PM, Koen van der Drift wrote: Hi, After a fink update, rasmol rebuild, and I get the following error: gcc -o rasmol -Os -Wall -Wpointer-arith -no-cpp-precomp -L/usr/ X11/ lib

[Fink-devel] rasmol build error

2010-04-18 Thread Koen van der Drift
Hi, After a fink update, rasmol rebuild, and I get the following error: gcc -o rasmol -Os -Wall -Wpointer-arith -no-cpp-precomp -L/usr/X11/ lib rasmol.o molecule.o abstree.o cmndline.o command.o transfor.orender.o repres.o pixutils.o outfile.o script.oinfile.o

Re: [Fink-devel] automated packaging for building from svn

2010-04-15 Thread Koen van der Drift
On Thu, Apr 15, 2010 at 1:26 PM, Alexander Hansen alexanderk.han...@gmail.com wrote: If we were to decide to give fink the ability to do checkouts from repositories, from a support standpoint a scheme that uses the current pull svn will be harder to debug than a scheme which checks out a

Re: [Fink-devel] RuntimeVars

2010-03-31 Thread Koen van der Drift
A quick glance, I notice two things: 1st: Version: 0.0svn Revision: 8062 Is this conforming the fink rules? 2nd: DescUsage: Download TeX-Font Metric (*.tfm), psfonts.map from ctan.org, put in $HOME. On terminal type the commands -- cp

Re: [Fink-devel] Request for Package review

2010-03-27 Thread Koen van der Drift
, at 3:33 PM, Hariharan B wrote: Hello Koen, As per your suggestion, I have added the depends field. Please check and notify any changes needed. Thank you On Fri, Mar 26, 2010 at 11:38 PM, Koen van der Drift koenvanderdr...@gmail.com wrote: This is assuming that Java 1.6

Re: [Fink-devel] Request for Package review

2010-03-27 Thread Koen van der Drift
This error message will come if your Java version is 1.5. Please find out your version using this command java -version $ java -version Unable to find a $JAVA_HOME at /usr, continuing with system-provided Java... java version 1.5.0_22 Java(TM) 2 Runtime Environment, Standard Edition

Re: [Fink-devel] libao - need 10.5 tester

2010-03-27 Thread Koen van der Drift
On Mar 27, 2010, at 9:32 AM, Max Horn wrote: Thanks for the test, Koen! I tried to patch around the issue, could you please try the attached revised .info file? That builds fine on my system. Hope this helps, - Koen.

Re: [Fink-devel] Request for Package review

2010-03-27 Thread Koen van der Drift
On Mar 27, 2010, at 12:04 PM, Benjamin Reed wrote: It looks like you have $JAVA_HOME set to /usr for some reason, which is not a valid $JAVA_HOME value. It has to be one of: That's because of the instructions in the extex package: Usage Notes: On terminal type the commands

Re: [Fink-devel] Request for Package review

2010-03-26 Thread Koen van der Drift
This is assuming that Java 1.6 is installed as /usr/bin/java Unfortunately you cannot assume that java is installed. So you need to include a dependency on java. There are other packages that depend on java that you can use as an example. - Koen. On Fri, Mar 26, 2010 at 1:47 AM, Hariharan B

Re: [Fink-devel] libao - need 10.5 tester

2010-03-26 Thread Koen van der Drift
On Mar 26, 2010, at 7:30 PM, Max Horn wrote: So, it would good if somebody with a 10.5 machine could test the attached *experimental* libao4 package (yes, they changed the compat version); if 10.5 support is really broken, a report should be written ASAP. Hi Max, As you predicted,

Re: [Fink-devel] problem while porting

2010-03-02 Thread Koen van der Drift
is compiling examples in example folder when it compile any program which includes stdlib.h it gives me syntax error in /i386/_structs.h when i manually edited this file and remove garbage values it works fine On Tue, Mar 2, 2010 at 9:44 PM, Koen van der Drift koenvanderdr...@gmail.com wrote: Cilk

Re: [Fink-devel] How to Handle Version Numbers

2010-02-19 Thread Koen van der Drift
It gets even more interesting with perl modules. For instance for Module-Build they go from 0.35 - 0.3501 - 0.3502 - 0.36. I'm just skipping the 0.350x ones, it would be a big mess otherwise :-) - Koen. On Fri, Feb 19, 2010 at 9:09 AM, Alexander Hansen alexanderk.han...@gmail.com wrote:

Re: [Fink-devel] problem with emboss upgrade

2010-01-24 Thread Koen van der Drift
On Jan 23, 2010, at 10:33 PM, Charles Lepple wrote: Did you try passing in a package name instead of a filename? Yeah, I figured that out later, but am still working on it. Thanks, - Koen. -- Throughout its 18-year

Re: [Fink-devel] problem with emboss upgrade

2010-01-23 Thread Koen van der Drift
On Dec 6, 2009, at 12:45 PM, Daniel Macks wrote: It's an upstream bug that probably has no user-visible effect. But if it does, the whole fink support team will spend days trying to sort it out and passing the blame all around. In essence, libeplplot uses libgd but does not use -lgd when

[Fink-devel] update yaml-tiny-pm request

2010-01-18 Thread Koen van der Drift
Hi, Since I didn't get a reply from the maintainer (by email and IRC), I am posting this here. A newer version of yaml-tiny-pm is required for a recent version of module-build-pm that I maintain: YAML::Tiny (1.36) is installed, but we need version = 1.38 Anyone knows if Ben Reed is around, he

Re: [Fink-devel] [Fink-users] problem with emboss upgrade

2010-01-18 Thread Koen van der Drift
libajax.la comes from emboss-ajax6-dev.  If emboss is building against the currently installed version of itself that's problematic--it should be able to find the libajax.la from its own build process That probably also explains these libtool warnings: libtool: install: warning:

Re: [Fink-devel] [Fink-users] problem with emboss upgrade

2010-01-17 Thread Koen van der Drift
these all need their own splitoff field, just like libeplplot? Thanks, - Koen. On Dec 6, 2009, at 12:45 PM, Daniel Macks wrote: On Sun, Dec 06, 2009 at 10:41:15AM -0500, Koen van der Drift wrote: Moving this to fink-devel. I saw that Dan fixed this issue in cvs - thanks! So if I understand

Re: [Fink-devel] [Fink-users] qcad in fink

2010-01-08 Thread Koen van der Drift
, at 10:18 PM, monipol wrote: On 07/01/2010, at 23:04, Koen van der Drift wrote: On Jan 7, 2010, at 3:24 AM, monipol wrote: Hello, Koen. Would it be possible to drop -pedantic? That should fix the 'long long' errors. Alas, I tried: SetCPPFLAGS: -Wno-long-long or SetCFLAGS: -Wno-long-long

Re: [Fink-devel] [Fink-users] qcad in fink

2010-01-07 Thread Koen van der Drift
On Thu, Jan 7, 2010 at 3:24 AM, monipol moni...@gmx.com wrote: Hello, Koen. Would it be possible to drop -pedantic? That should fix the 'long long' errors. Hi monipol, Thanks for the suggestion. A quick search in the docs how to do that, did not find any info on using -Wno-pedantic, but I

Re: [Fink-devel] [Fink-users] qcad in fink

2010-01-07 Thread Koen van der Drift
On Jan 7, 2010, at 3:24 AM, monipol wrote: Hello, Koen. Would it be possible to drop -pedantic? That should fix the 'long long' errors. Alas, I tried: SetCPPFLAGS: -Wno-long-long or SetCFLAGS: -Wno-long-long But get the same error. Maybe the syntax is wrong? - Koen.

Re: [Fink-devel] New libgettext8 package

2009-12-09 Thread Koen van der Drift
Now duck as fast as you can, Max ;-) - Koen. On Wed, Dec 9, 2009 at 11:40 AM, Max Horn m...@quendi.de wrote: Am 09.12.2009 um 17:17 schrieb Benjamin Reed: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 12/9/09 10:55 AM, Max Horn wrote: OK. So considering we have SetMAKEFLAGS: -j1

Re: [Fink-devel] [Fink-users] problem with emboss upgrade

2009-12-06 Thread Koen van der Drift
no one break their backs trying to fix it. I just would like to be able to have it done in the next few days to a week. Thanks everyone already for your help! Gus On Sat, Dec 5, 2009 at 4:19 PM, Koen van der Drift koenvanderdr...@gmail.com mailto:koenvanderdr...@gmail.com wrote: I'm just

Re: [Fink-devel] New libgettext8 package

2009-11-30 Thread Koen van der Drift
On Nov 30, 2009, at 2:25 PM, Daniel Macks wrote: If some 10.5 and 10.6 folks on various architectures could comment out the Distribution flag in their libgettext8-shlibs.info and get some (hopefully:) positive reports that it 'fink -m build's, can make it more widely available... No

Re: [Fink-devel] ncbitools build failure

2009-11-22 Thread Koen van der Drift
or take over maintainership. - Koen. On Nov 22, 2009, at 5:35 AM, Martin Costabel wrote: Koen van der Drift wrote: Hi Richard, Ncbitools package fails as follows on 10.5.8, unstable. Looking at the cvs log, it semes to me that the maintainer has last touched this sometime in 2003. You

[Fink-devel] ncbitools build failure

2009-11-21 Thread Koen van der Drift
Hi Richard, Ncbitools package fails as follows on 10.5.8, unstable. I have the following motif packages installed: i openmotif3-shlibs 2.2.4-4 Official Implementation of OSF/Motif i openmotif4-shlibs 2.3.2-2 Official Implementation of OSF/Motif - Koen.

Re: [Fink-devel] bioperl not working on 10.6

2009-11-12 Thread Koen van der Drift
I have no access to 10.6, and am unable to test this as the maintainer. Feel free to update the package as suited. Note that many of the dependencies are optional, they add functionality to bioperl, but their absense doesn't break anything, AFAIK. - Koen. On Thu, Nov 12, 2009 at 1:05 PM, David

Re: [Fink-devel] FinkCommander 0.5.5 (huh?)

2009-11-07 Thread Koen van der Drift
I am getting the following errors when tryin to selfupdate through finkcommander (0.5.5 built in Xcode): I will now run the cvs command to retrieve the latest package descriptions. The 'su' command will be used to run the cvs command as the user 'koen'. After that, the core packages will be

[Fink-devel] lipo: can't open input file error

2009-10-13 Thread Koen van der Drift
A package I am working on gives the following warning on my iMac G5: ... ld warning: in /sw/lib/qt4-x11/lib/libQtGui.dylib, file is not of required architecture ld warning: in /sw/lib/libpng.dylib, file is not of required architecture ld warning: in /sw/lib/libfreetype.dylib, file is not of

Re: [Fink-devel] lipo: can't open input file error

2009-10-13 Thread Koen van der Drift
Yeah, Iwas thinking along those lines as well. So I found that if I comment out the line: set( CMAKE_OSX_ARCHITECTURES ppc;i386 ) it will not create a universal binary. But then it will create different packages for ppc and i386, correct? How do I work around that, should I make variants, eg?

Re: [Fink-devel] lipo: can't open input file error

2009-10-13 Thread Koen van der Drift
On Tue, Oct 13, 2009 at 8:46 AM, Martin Costabel costa...@wanadoo.fr wrote: Koen van der Drift wrote: Yeah, Iwas thinking along those lines as well. So I found that if I comment out the line: set( CMAKE_OSX_ARCHITECTURES ppc;i386 ) it will not create a universal binary

Re: [Fink-devel] lipo: can't open input file error

2009-10-13 Thread Koen van der Drift
I don't think you have to play any games with multiple .info files or conditionals in PatchScript.  As you said at the top, commenting out the line gives you a single architecture.  So, as Martin stated, a deb built on ppc and a deb built on i386 are given different names because they are

Re: [Fink-devel] emboss and 10.6

2009-10-01 Thread Koen van der Drift
version is included on 10.6? Thanks, - Koen. On Tue, Sep 29, 2009 at 1:30 PM, Koen van der Drift koenvanderdr...@gmail.com wrote: Hi, I got a report from a user that emboss builds fine on 10.6/64bit. He also added a -O3 optimization without any problems. I have a PPC and am stuck on 10.5, so

[Fink-devel] emboss and 10.6

2009-09-29 Thread Koen van der Drift
Hi, I got a report from a user that emboss builds fine on 10.6/64bit. He also added a -O3 optimization without any problems. I have a PPC and am stuck on 10.5, so cannot verify it. Not sure if this is the way to report it, but feel free to add emboss to the list of packages that works with 10.6.

[Fink-devel] coot and gtkglext1

2009-09-25 Thread Koen van der Drift
Hi, When trying to install coot, I get the following warning: WARNING: The package coot Depends on gtkglext1, but gtkglext1 only allows things to BuildDepend on it. Package manager version: 0.29.9 Distribution version: selfupdate-cvs Fri Sep 25 18:09:20 2009, 10.5, powerpc Thanks,

[Fink-devel] sqlite3-rb18 depends on obsolete package

2009-09-20 Thread Koen van der Drift
Hi Benjamin, I did a fink cleanup, and got the following error: Reading buildlock packages... All buildlocks accounted for. The following 1 obsolete package(s) will be removed: swig-shlibs 1.3.20-1014 Tool that connects C, C++ programs with high-level languages

Re: [Fink-devel] module-build-pm5100-bin conflicts with perl5100

2009-09-03 Thread Koen van der Drift
if there are any. Thanks, - Koen. On 7/12/09, Koen van der Drift koenvanderdr...@gmail.com wrote: FYI, I have updated module-build in cvs. Please test to see if the conflict is gone. Thanks, - Koen. On Jul 2, 2009, at 11:48 AM, Jean-François Mertens wrote: On 02 Jul 2009, at 16

Re: [Fink-devel] module-build-pm5100-bin conflicts with perl5100

2009-07-12 Thread Koen van der Drift
FYI, I have updated module-build in cvs. Please test to see if the conflict is gone. Thanks, - Koen. On Jul 2, 2009, at 11:48 AM, Jean-François Mertens wrote: On 02 Jul 2009, at 16:58, Koen van der Drift wrote: There are several packages that use module-build so it will be difficult

Re: [Fink-devel] module-build-pm5100-bin conflicts with perl5100

2009-07-06 Thread Koen van der Drift
somewhere else. I may jump on irc this weekend if needed to discuss this, thank you sir ;-) - Koen. On 7/2/09, Jean-François Mertens j...@core.ucl.ac.be wrote: On 02 Jul 2009, at 16:58, Koen van der Drift wrote: There are several packages that use module-build so it will be difficult

Re: [Fink-devel] module-build-pm5100-bin conflicts with perl5100

2009-07-02 Thread Koen van der Drift
There are several packages that use module-build so it will be difficult to remove it completely, I think. - Koen. On 7/2/09, Jean-François Mertens j...@core.ucl.ac.be wrote: On 30 Jun 2009, at 03:21, David R. Morrison wrote: I guess another possibility would be to use the alternatives

Re: [Fink-devel] module-build-pm5100-bin conflicts with perl5100

2009-06-29 Thread Koen van der Drift
There are now two threads going on about this subject, one in -core and one in -devel. Since I don't belong to -core, I'll follow up here. On 6/29/09, Daniel Macks dma...@netspace.org wrote: We really need to figure out whether config_data is used directly by users (i.e., must be in PATH so can

Re: [Fink-devel] module-build-pm5100-bin conflicts with perl5100

2009-06-23 Thread Koen van der Drift
, 2009 at 10:14:40AM -0400, Koen van der Drift wrote: (including fink-devel) I did some more digging, and the bin splitoff was created a few years ago by a previous maintainer: http://fink.cvs.sourceforge.net/viewvc/fink/dists/10.3/unstable/main/finkinfo/libs/perlmods/module-build-pm.info

Re: [Fink-devel] module-build-pm5100-bin conflicts with perl5100

2009-06-22 Thread Koen van der Drift
and never added that variant, so never caught it before. - Koen. On 6/21/09, Koen van der Drift koenvanderdr...@gmail.com wrote: On Jun 21, 2009, at 3:03 PM, Daniel Macks wrote: Adding C/R fixes a problem, but not the conflicts with perl5100 one that started this thread. Ok

Re: [Fink-devel] module-build-pm5100-bin conflicts with perl5100

2009-06-22 Thread Koen van der Drift
a splitoff for the %i/bin/config_data script so that multiple copies of this module may be installed for different Perl versions. Please advice where to put the config_data file, so I can fix the package. Thanks, - Koen. On Jun 20, 2009, at 4:27 PM, Koen van der Drift wrote: Hi Jean

Re: [Fink-devel] module-build-pm5100-bin conflicts with perl5100

2009-06-21 Thread Koen van der Drift
a splitoff for the %i/bin/config_data script so that multiple copies of this module may be installed for different Perl versions. Please advice where to put the config_data file, so I can fix the package. Thanks, - Koen. On Jun 20, 2009, at 4:27 PM, Koen van der Drift wrote: Hi Jean

Re: [Fink-devel] module-build-pm5100-bin conflicts with perl5100

2009-06-21 Thread Koen van der Drift
On Jun 21, 2009, at 12:49 PM, Daniel Macks wrote: But now also fink's perlXXX itself also has that file? I guess perl has a module-build in core now? I don't have perl 5.10 installed but if that is the case, why not simply remove 5.10 as a variant? - Koen.

Re: [Fink-devel] module-build-pm5100-bin conflicts with perl5100

2009-06-21 Thread Koen van der Drift
On Jun 21, 2009, at 1:45 PM, Daniel Macks wrote: module-build, as with many perl modules that are part of perl core, is dual-lifed: it *also* exists in CPAN, and may be updated more often than perl core, and other modules may require that newer version. Having a separate fink package for the

Re: [Fink-devel] making qt4 variants

2009-06-20 Thread Koen van der Drift
Thanks both for your answers. I build both versions, and they just look the same. I guess I was confused by thinking that qt4-mac would make it look like a aqua app. It's still an X11 based app, and will appear in an X11 window. So for now I will just leave the current kemboss.info

Re: [Fink-devel] making qt4 variants

2009-06-20 Thread Koen van der Drift
On Jun 20, 2009, at 2:23 PM, Benjamin Reed wrote: No, building against qt4-mac should give you aqua-native apps (well, technically it's using Carbon). It should not start X11. If it does, something went wrong with your build. Yes it did - I was using the wrong qmake. I fixed that and now

Re: [Fink-devel] making qt4 variants

2009-06-20 Thread Koen van der Drift
On Jun 19, 2009, at 3:57 PM, Alexander Hansen wrote: For 3), if there's file overlap, and you want to get rid of the qt3 version, you may want to make a dummy upgrade package for the older kemboss that Depends on the appropriate Variant(s) of kemboss-qt4; e.g. if it only overlaps with

[Fink-devel] making qt4 variants

2009-06-19 Thread Koen van der Drift
Hi, I recently added a new package (kemboss, a GUI for EMBOSS) to fink. Initially I made a x11 only version, but the developer mentioned that it would be nice if there was also a qt-mac version. So I looked at some other packages to use as an example, and saw that poppler4-qt4 does the same. It's

Re: [Fink-devel] gmp-4.3.1-1000

2009-05-16 Thread Koen van der Drift
On May 16, 2009, at 6:37 PM, Jack Howarth wrote: I haven't tested on powerpc-apple-darwin yet but the initial 4.3.0 release had no issues there. No problems on my iMac G5 with 10.5.7, Package manager version: 0.29.5 Distribution version: selfupdate-cvs Sat May 16 19:25:08 2009, 10.5,

[Fink-devel] download during install-phase

2009-05-10 Thread Koen van der Drift
Hi, A package I maintain has some optional components that are downloaded during the install phase inside the expanded tarball. Is this allowed, or should I pre-download everything and then copy it into the expanded tarball? Thanks, - Koen.

Re: [Fink-devel] download during install-phase

2009-05-10 Thread Koen van der Drift
On May 10, 2009, at 11:16 AM, David R. Morrison wrote: On May 10, 2009, at 6:46 AM, Koen van der Drift wrote: A package I maintain has some optional components that are downloaded during the install phase inside the expanded tarball. Is this allowed, or should I pre-download everything

[Fink-devel] fink IRC archives ?

2009-05-07 Thread Koen van der Drift
Anyone knows where the IRC archives are stored these days? The link from the website listed here: http://www.finkproject.org/links.php is now dedicated to WoW. thanks, - Koen. -- The NEW KODAK i700 Series Scanners

Re: [Fink-devel] [Fwd: Perl 5.10.0 Module Build Issue]

2009-04-14 Thread Koen van der Drift
On 4/13/09, Alexander Hansen alexanderk.han...@gmail.com wrote: Not remotely my package so I'm forwarding this on. I'm the maintainer of module-build-pm, but I don't see from the output posted how this is related to that package, it looks to be an issue with uri-pm. - Koen.

Re: [Fink-devel] gnucash-1.8.12-11

2009-04-08 Thread Koen van der Drift
On 4/8/09, Ajay Gautam ajay...@gmail.com wrote: My X11's About says - Xquartz 2.1.5 - (xorg-server 1.3.0-apple22) (2.1.5) Did you install the most recent from http://xquartz.macosforge.org/trac/wiki/X112.3.2.1 ? - Koen.

[Fink-devel] Perl error due to 'unimplemented weak references'

2009-02-27 Thread Koen van der Drift
Hi, A user of bioperl that I maintain reported the following error: Hi Koen, Hope this finds you well. I wanted to let you know about a bug in bioperl-pm588. Tried a script (i.e., mitobank.pl from David Posada's lab) on Ubuntu 8.04/8.10 with bioperl (1.5.2.102-1ubuntu1/1.5.2.102-3) and works

Re: [Fink-devel] Perl error due to 'unimplemented weak references'

2009-02-27 Thread Koen van der Drift
Thanks, that's what I thought too. I'll shoot it back. - Koen. On 2/27/09, Alexander Hansen alexanderk.han...@gmail.com wrote: Koen van der Drift wrote: Hi, A user of bioperl that I maintain reported the following error: Hi Koen, Hope this finds you well. I wanted to let you

Re: [Fink-devel] Perl error due to 'unimplemented weak references'

2009-02-27 Thread Koen van der Drift
Thanks, I have asked him to check that. I also came across this: http://developers.slashdot.org/article.pl?sid=09/02/18/1435227 Not sure if it is the same issue, though. - Koen. On 2/27/09, Martin Costabel costa...@wanadoo.fr wrote: Koen van der Drift wrote: [] ~/Desktop$ mitobank.pl

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