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Hi.
I need to be removed from the mailing list. Kindly help do the same. The id
is sridevisundara...@gmail.com
Regards
Sridhevi
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Hi all,
I am trying to convert freesurfer reconall output back in original subject
space so I am following this guide:
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SVM is a segmentation/classification algorithm and does not give the
inference that the GLM gives. Not sure what other models you are talking
about
On 8/21/2023 9:28 AM, 林 耀云 wrote:
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Hi Freesurfer Team,
I have
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Hi Freesurfer Team,
I have a question can’t understand. Why just uses general linear model to
analysis in Freesurfer? There are a lot of models such as nonlinear model, SVM
and others. Please help me answer. Thank you so much. Additionally, as
scanned.
Best,
Jackson
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Atwater, Emanuel R
Sent: Thursday, July 27, 2023 6:15 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] (no subject)
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Hello FreeSurfer
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Hello FreeSurfer Team,
I recently messaged about running a longitudinal scan on a couple of images.
The response told me to utilize "timepoints":
For base processing, specify each timepoint with -tp <> (not the nii file).
recon-all -base -tp -tp
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Dear Freesurfer Team,
Greetings. My name is dr. Pukovisa Prawiroharjo, Sp.S(K), PhD. I am a
lecturer and researcher at the Department of Neurology Faculty of Medicine
Universitas Indonesia (UI) in Indonesia.
I am pleased to inform you that we have
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Please unsubscribe me
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The information in this e-mail is intended only for the person to
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Hello,
Is it feasible to get the password to access the FreeSurfer VirtualBox VM's
FS 7 2 0 Ubuntu 18 04 06.ova.7z image?
I sincerely appreciate it.
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Hi, I want to obtain the gyral height and the sulcal depth for every region
of the aparc atlas. I know that in the file lh.sulc the positive values are
the depth of the sulcus and the negative one are the height of the gyrus.
How can I obtain
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behcetayyild...@gmail.com
--
*Behçet Ayyıldız..*
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The information in this e-mail is
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Sorry if this is a repeat email from last night, but signal 9 can mean you ran
out of memory. You should try allocating more memory to the VM..
You could also try running the latest freesufer version = 7.3.2 which is
compiled for Ubuntu 20 and you
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Hi,
The FreeSurfer VM image needs a pass code to unarchive. Would you
please send me the pass code?
Alex
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Hi,
I try to do something like that, Would anyone help me
--
*GUELIB Bouchra: *Ph.D. student
*Lire *Laboratory
University: Constantine 2-Abdelhamid Mehri- *Algeria *
Alternative email: guelibbouc...@gmail.com
Not sure. I think those distortions are the surface folding back in on
itself, so you may need more cuts.
On 5/25/2022 9:26 AM, Alberto Pisoni wrote:
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Hi all, I am trying to flatten a whole hemisphere, and i created the
cut patch following the tutorials.
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Hi all, I am trying to flatten a whole hemisphere, and i created the cut
patch following the tutorials.
see the result here.
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Thank you for the answer.
So the averaged MRI has the size of the mni305.
Is there a way to give it its true size?
This can be problematic for children's MRIs.
> Le 2 mai 2022 à 21:33, Douglas N. Greve a écrit :
>
> It will remain in talairach space
It will remain in talairach space ( actually mni305)
On 5/2/2022 1:08 PM, Sébastien Daligault wrote:
> External Email - Use Caution
>
> Hi support,
> I have a naive question about the make_average_subject function.
> I want to average MRIs to create a template.
> This process uses the
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Hi support,
I have a naive question about the make_average_subject function.
I want to average MRIs to create a template.
This process uses the talairach transformation to average in a common space.
Once averaged, is the MRI still in this space or is
Just give freeview the path to whatever volume or surface you want to visualize
Cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Jabeur Mouna
Sent: Wednesday, April 27, 2022 5:45 AM
To: Freesurfer support list
Subject: [Freesurfer] (no subject)
External Email
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Hello,
How can i import an image.nii from a folder different from
/usr/local/freesurfer/7.2.0/subjects
to visualise it with freeview ?
Please!
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Hello,
Can you please clarify the following:
Do we use subcortical QC rating for all subcortical measures such as
accumbens as well measures such as total white matter volume. We do not use
it for estimated total intracranial volume as this is
No, it should not
On 6/22/2021 4:12 PM, miracle ozzoude wrote:
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Hello All,
I was wondering if the Right/Left-Cerebral-White-Matter in the
aparc+aseg.mgz contains WM hypointensities.
mri_segstats --seg aparc+aseg.mgz -i dti_fa.nii.gz --sum dti_fa.stats
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Hello All,
I was wondering if the Right/Left-Cerebral-White-Matter in the
aparc+aseg.mgz contains WM hypointensities.
mri_segstats --seg aparc+aseg.mgz -i dti_fa.nii.gz --sum dti_fa.stats
--ctab FreeSurferColorLUT.txt
Best,
Paul
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Hi Doug,
I ran
mri_glmfit \--table aseg.txt \--fsgd newCH_deblank3.fsgd dods \--C
groupdiff.mtx \--glmdir aseg.glmdir
this created a folder aseg.glmdir which contains another folder groupdiff,
where sig.ghm is,
I then tried to visualise results
How did you create the sig.mgh that you are trying to overlay?
On 5/28/2021 11:16 AM, Francisca Ferreira wrote:
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Dear Experts,
I have extracted subcortical vols corrected for intracranial vols
using asegstats2table and I ran mri_glmfit using the
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Dear Experts,
I have extracted subcortical vols corrected for intracranial vols using
asegstats2table and I ran mri_glmfit using the following command
mri_glmfit \--table aseg.txt \--fsgd newCH_deblank3.fsgd dods \--C
groupdiff.mtx \--glmdir
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Hello,
I am running into errors when running
segmentHA_T2.sh ${subj}
/data/bswift-1/dcallow/aging/freesurfer/${subj}/mri/T2.norm.mgz T2 1
Approximately 10% of my subjects are being processed but for some reason,
the majority fail to execute. Here is
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Hi,
Hope all are safe and well. Can anyone help me in finding any biomarker for
Alzheimer's Disease or any guidance related to that?
Waiting for response.
Regards:
Rahul Sharma
Research Scholar
9827834360
*"Manners Maketh Man"*
Dear Sir or Madam,
I am not longer working with FreeSurfer so I would like to remove my
subscription to the mailing list.
Thank you,
Laura
smime.p7s
Description: S/MIME cryptographic signature
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Freesurfer
No, you'll have to add it as a covariate. Or you can add --etiv when you run
mris_preproc and it will divide the maps by the eTIV
On 11/25/2020 3:23 PM, Sara Lyn wrote:
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Hi Freesurfer experts,
I'm doing a surface based volume analysis and wanted to know if
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Hi Freesurfer experts,
I'm doing a surface based volume analysis and wanted to know if there was a
flag to regress out eTIV in the model.
Thank you
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Windows 10
Try this instead
aparcstats2table --hemi lh --subjects subj10 --parc aparc.a2009s
--meas meancurv --tablefile /home/team33/ aparcstats.txt
On 11/3/2020 12:20 PM, saman fouladi wrote:
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hi
I run in linux command:
Hi Saman,
It looks like with the --subjects flag you are pointing Freesurfer to the stats
directory within a subject directory (where Freesurfer expects the subject
directory). aparcstats2table and asegstats2table assume a standard Freesurfer
directory configuration so try entering just
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hi
I run in linux command:"""
aparcstats2table --hemi lh --subjects /home/team33/MRI4/subj10/stats --parc
aparc.a2009s --meas meancurv --tablefile /home/team33/
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hi
I was running several putty windows for recond-all MRI pictures.
Some putty were inactived during running.
How can I activate them?
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Sorry, that is not a question for us but rather for your local sys admin
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of saman fouladi
Sent: Friday, October 23, 2020 6:52 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] (no subject)
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hi
Can you run recon-all again with -debug as the first argument? Send me
the command line and all the terminal output
On 7/9/2020 2:10 PM, Peka Savayan wrote:
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The file that I sent you is the recon-all.log file.
If copying file 'RB_all_2008-03-26.gca' from
External Email - Use Caution
The file that I sent you is the recon-all.log file.
If copying file 'RB_all_2008-03-26.gca' from another FS version to
directory /freesurfer-7.1.0/average
will solve my problem?
On Thu, Jul 9, 2020 at 12:30 PM Douglas N. Greve
wrote:
> Can
Can you send the recon-all.log file?
On 7/9/2020 1:25 PM, Peka Savayan wrote:
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I can open it. Can you? No permission required to my knowledge.
On Thu, Jul 9, 2020 at 11:53 AM Douglas N. Greve
mailto:dgr...@mgh.harvard.edu>> wrote:
Do you have read
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I can open it. Can you? No permission required to my knowledge.
On Thu, Jul 9, 2020 at 11:53 AM Douglas N. Greve
wrote:
> Do you have read permission to it?
>
> On 7/8/2020 2:25 PM, Peka Savayan wrote:
>
> External Email - Use Caution
> Yes.
Do you have read permission to it?
On 7/8/2020 2:25 PM, Peka Savayan wrote:
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Yes.
On Wed, Jul 8, 2020 at 10:01 AM Douglas N. Greve
mailto:dgr...@mgh.harvard.edu>> wrote:
Does that file exist?
On 7/7/2020 8:59 AM, Peka Savayan wrote:
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Yes.
On Wed, Jul 8, 2020 at 10:01 AM Douglas N. Greve
wrote:
> Does that file exist?
>
> On 7/7/2020 8:59 AM, Peka Savayan wrote:
>
> External Email - Use Caution
> Dear experts,
>
> I try to run recon-all using FS 7.1.0 on a cluster with OS
Does that file exist?
On 7/7/2020 8:59 AM, Peka Savayan wrote:
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Dear experts,
I try to run recon-all using FS 7.1.0 on a cluster with OS CentOS6.
I got the recon-all.log error message:
ERROR: cannot find
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Dear experts,
I try to run recon-all using FS 7.1.0 on a cluster with OS CentOS6.
I got the recon-all.log error message:
ERROR: cannot find
/share/apps/freesurfer-7.1.0/average/RB_all_2008-03-26.gca
Thanks for your help.
Sincerely,
Peka
--
Peka
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Thanks Bruce.
On 13/05/2020 15:41, Bruce Fischl wrote:
Hi Ian
we don't register to an individual subject - we register to a
probabilistic atlas compiled from many subjects. The fsaverage
subjects were also generated from that data so they are in
Hi Ian
we don't register to an individual subject - we register to a
probabilistic atlas compiled from many subjects. The fsaverage subjects
were also generated from that data so they are in register, but the actual
atlas is a .tif file that you can find as the target of mris_register in
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Hi guys.
After recon-all, the /surf/?h.sphere.reg file implies a registration has
been performed to an "average" subject on a sphere. Can you please tell
me which subject this is? Is it SUBJECTS_DIR/fsaverage? If so, what is
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is there a way to visualize the changes in thickness, area, and volume between
the 2 timepoints (cortical and subcortical)? I was under the impression that
running mri_preproc would aloow me to visualize change in cortical thickness bt
the 2
For thickness, you can look at the difference (or percent difference).
You would use freeview (or tksurferfv, which is a frontend for
freeview). When you run mris_preproc, you can specify that you want it
to compute the (percent) difference, or you can do it with the
multi-frame output of
Oh, right. You only have one data point (the difference) and you are
computing one parameter (the mean), so you have 0 DOF. If you only have
one data point, there are not statistical tests you can do
On 5/1/2020 3:34 AM, KennethSPrice wrote:
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In the FSGD
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In the FSGD file I have one subject pair (timepoint 1 and timepoint 2), and it
is the only group. However, I removed --fsgd and replaced it with --osgm upon
your reccomendation, and am still getting the error.
I am also having an issue visualizing
how many subjects are there in your fsgd? How many groups in your fsgd
file? Also, you should not use --osgm and --fsgd
On 4/30/2020 1:09 PM, KennethSPrice wrote:
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Hello Freesurfer friends!
I'm going through the "paired analysis" tutorial and am running
External Email - Use Caution
Hello Freesurfer friends!
I'm going through the "paired analysis" tutorial and am running into an issue
with the mri_glmfit. I am running on just one subject pair.
https://surfer.nmr.mgh.harvard.edu/fswiki/PairedAnalysis#Runmriglmfit
I ran
eve the minimal compiled
> distribution is less than 2GB.
>
> Andrew
>
>
>
> *From: * on behalf of Ерохин
> Александр
> *Reply-To: *Ерохин Александр , FS Help <
> freesurfer@nmr.mgh.harvard.edu>
> *Date: *Wednesday, April 22, 2020 at 12:35 PM
> *To: *FS He
I don’t have an exact number, but I believe the minimal compiled distribution
is less than 2GB.
Andrew
From: on behalf of Ерохин Александр
Reply-To: Ерохин Александр , FS Help
Date: Wednesday, April 22, 2020 at 12:35 PM
To: FS Help
Subject: Re: [Freesurfer] (no subject)
External
ming…
>
>Hope that helps,
>Andrew Hoopes
>
>From: < freesurfer-boun...@nmr.mgh.harvard.edu > on behalf of Ерохин
>Александр < erohin_...@mail.ru >
>Reply-To: Ерохин Александр < erohin_...@mail.ru >, FS Help <
>freesurfer@nmr.mgh.harvard.edu >
>Date
more time
consuming…
Hope that helps,
Andrew Hoopes
From: on behalf of Ерохин Александр
Reply-To: Ерохин Александр , FS Help
Date: Sunday, April 19, 2020 at 1:49 PM
To: FS Help
Subject: [Freesurfer] (no subject)
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Hello together,
The FreeSurfer
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Hello together,
The FreeSurfer distribution takes 10G of the disk space in my local
installation. It has numerous tools, but it’s not modular, or at lest it’s very
hard to tell boundaries between modules.
E.g. /bin folder contains around 860
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Thank you so much. I shall modify my other scripts then.
Peng
On Mon, 6 Apr 2020 at 16:59, Ruopeng Wang
wrote:
> I don’t think look up table works with negative indices. It was mainly
> designed for label volumes.
>
> Ruopeng
>
> On Apr 6, 2020,
I don’t think look up table works with negative indices. It was mainly designed
for label volumes.
Ruopeng
> On Apr 6, 2020, at 10:35 AM, Peng Liu wrote:
>
> External Email - Use Caution
>
>
> Hi Ruopeng,
>
> Thank you for your reply.
>
> I have also tried NIH and JET,
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Hi Ruopeng,
Thank you for your reply.
I have also tried NIH and JET, but with negative scale, the entire image
will turn into one same color as if there is some error.
Meanwhile the reason of me trying to create .lut map is because I want five
Hi Peng,
Your lookup table only contains indices between 0 to 6. In any case I would not
use look up table to display negative scales. Have you tried any other color
maps like JET or NIH which has more colors?
Best,
Ruopeng
> On Apr 6, 2020, at 6:30 AM, Peng Liu wrote:
>
> External
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Dear Freesurfer experts,
I am trying to customize a colour map of my own, with five colours and
scale from -12.5 to 12.5, since when using Heat (with default options), the
scale is correct but it is shown in only four colours.
However after I created
: [Freesurfer] within-subject contrast between runs
On 3/6/2020 11:15 AM, Milde, Christopher wrote:
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Dear Freesurfer Experts,
I have a very basic questions about creating subject-wise contrasts
between runs
*
*
*Background*
Study with two runs per subject where
wishes
Chris
Von: freesurfer-boun...@nmr.mgh.harvard.edu
im Auftrag von Douglas N. Greve
Gesendet: Freitag, 6. März 2020 17:54:16
An: freesurfer@nmr.mgh.harvard.edu
Betreff: Re: [Freesurfer] within-subject contrast between runs
On 3/6/2020 11:15 AM, Milde
On 3/6/2020 11:15 AM, Milde, Christopher wrote:
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Dear Freesurfer Experts,
I have a very basic questions about creating subject-wise contrasts
between runs
*
*
*Background*
Study with two runs per subject where each run corresponds two a
different
External Email - Use Caution
Dear Freesurfer Experts,
I have a very basic questions about creating subject-wise contrasts between runs
Background
Study with two runs per subject where each run corresponds two a different
condition (i.e. Stimulation A (on - off) and
It is is really bright there, try putting a few control points in WM
(make sure they are in WM)
On 3/3/20 12:30 PM, Laboratorio de Neurociencia Funcional wrote:
>
> External Email - Use Caution
>
> Dear Freesurfeer experts,
> After running the recon-all in one of my subjets, part of the
External Email - Use Caution
Dear Freesurfeer experts,
After running the recon-all in one of my subjets, part of the temporal
lobe was partially excluded. Then, I tried to use the watershed
algorithm to be less agressive in the skull stripping
as follows:
recon-all -skullstrip
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Hi Eugenio -
Hope you are well. I am trying to extract the HSF from a group of processed
brains. Previously I used the command:
quantifyHippocampalSubfields.sh 195950 HSF_Cannabis
Has this changed? If so what is the new command?
Thanks,
Alan
--
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Hello Phillip,
If you run the following command on that file - which is from the 6.0.0
freesurfer release,
$ file/Applications/freesurfer/tktools/tkregister2.bin
I think you will see that it reports it is a i386 binary - which is 32 bit -
and cannot
I'm guessing that the fragments might cause problems later either in gtmseg as
a hard failure or in gtmpvc as an ill-conditioned matrix. But you can try it
out:)
On 1/11/2020 6:04 PM, Boris Rauchmann wrote:
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Thanks, that solution seems to work finally. I
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That's it! Thank you Doug!
Best wishes,
Marina.
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Thanks, that solution seems to work finally. I just ignored the remaining
voxels labeled according to the standard aseg scheme and proceeded with the the
PET analysis and the combined LUT.
I will ignore the remaining fragment labels from the original
On 1/8/2020 10:17 AM, Boris Rauchmann wrote:
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Ok. i figured it out. The problem was just that you can not specify the file
type - so .mgz in BN_Atlas_subcotex.mgz was actually the problem.
Ah, ok. This is actually fixed in our development version.
Now I
when you make the average subject, just use --ico 5
On 1/9/2020 11:15 AM, Marina Fernández wrote:
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Dear Freesurfer experts,
Now, I would like to downsample the average subject of a dataset (that is a 7th
order icosahedron tesselation) to have surfaces with
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Dear Freesurfer experts,
Now, I would like to downsample the average subject of a dataset (that is a
7th order icosahedron tesselation) to have surfaces with 10242 vertices (5th
order icosahedron tesselation).
How can I do that?
Thank you in
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Ok. i figured it out. The problem was just that you can not specify the
file type - so .mgz in BN_Atlas_subcotex.mgz was actually the problem.
Now I run in a new issue:
gtmseg --head BN_apas+head.mgz --s 1122_test --o NEU_BN.gtmseg.mgz
--ctx-annot
Are you sure you have permission to view that file?
On 1/6/20 5:01 PM, Boris Rauchmann wrote:
> External Email - Use Caution
>
> I’m sure just double checked it. I don’t know what’s wrong here.
>
> Von meinem iPhone gesendet
>
>>> Am 06.01.2020 um 18:35 schrieb Greve, Douglas N.,Ph.D.
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I’m sure just double checked it. I don’t know what’s wrong here.
Von meinem iPhone gesendet
>> Am 06.01.2020 um 18:35 schrieb Greve, Douglas N.,Ph.D.
>> :
> This is not making any sense to me. Are you sure you are in
> $SUBJECTS_DIR/1122/mri when
This is not making any sense to me. Are you sure you are in
$SUBJECTS_DIR/1122/mri when you run mri_aparc2aseg and are you sure that
BN_Atlas_subcotex.mgz is in the same folder?
On 1/3/20 3:07 PM, Boris Rauchmann wrote:
>
> External Email - Use Caution
>
> Thank you for testing it. As
External Email - Use Caution
Thank you for testing it. As before I get the same error message.
Do you know what I´m doing wrong here?
Best,
Boris
MacBook-Pro:mri boris$ mri_aparc2aseg --s 1122 --volmask --aseg
BN_Atlas_subcotex.mgz --o aparc+BN_Atlas_subcotex.mgz
SUBJECTS_DIR
OK, using the data you sent I was able to get mri_aparc2aseg to run. Can you
try this command again?
On 12/12/2019 11:57 AM, Boris Rauchmann wrote:
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My-Computer:~ boris$ mri_aparc2aseg --s 1122 --volmask --aseg
BN_Atlas_subcotex.mgz --o
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Dear Douglas,
I uploaded two files: 1122.tar.gz is the sample subject and
BN_Atlas_freesurfer.tar.gz this is the Atlas I want use for the cortical and
subcortical parcellation/segmentation.
Thank you so much,
Boris
> Am 02.01.2020 um 17:06
Can you send me the subject data following these steps?
From the linux command line,
Create the file you want to upload, eg,
cd $SUBJECTS_DIR
tar cvfz subject.tar.gz ./subject
Now log into our anonymous FTP site:
ftp surfer.nmr.mgh.harvard.edu
It will ask you for a user name: use "anonymous" (no
OK, I'm still at a loss. The one suspicious thing is that it only took a few
min to run. So you have never looked at that volume? What is in the atlas?
On 12/16/2019 3:42 PM, Boris Rauchmann wrote:
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This is the log when I´m creating this file:
sorry, my fault. That was for someone else
On Mon, 16 Dec 2019, Boris
Rauchmann wrote:
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This is the log when I´m creating this file:
Boriss-MacBook-Pro:BN_Atlas_freesurfer boris$ mri_ca_label
$SUBJECTS_DIR/1122/mri/brain.mgz
to summarize, I want a warp that:
foreach subject
compute warp based on curvature
apply warp to a functional overlay
add that functional overlay to avg
return (tf.reduce_mean(tf.square(avg)))
make sense? So maximizing the mean squared average acivation
On Mon, 16 Dec 2019, Boris
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This is the log when I´m creating this file:
Boriss-MacBook-Pro:BN_Atlas_freesurfer boris$ mri_ca_label
$SUBJECTS_DIR/1122/mri/brain.mgz
$SUBJECTS_DIR/1122/mri/transforms/talairach.m3z
$SUBJECTS_DIR/BN_Atlas_subcortex.gca
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Thanks, it was created using:
mri_ca_label $SUBJECTS_DIR/1122/mri/brain.mgz
$SUBJECTS_DIR/1122/mri/transforms/talairach.m3z
$SUBJECTS_DIR/BN_Atlas_subcortex.gca
$SUBJECTS_DIR/1122/mri/BN_Atlas_subcotex.mgz
Best,
Boris
> Am 16.12.2019 um 21:12
There is something weird about that file. How was it created?
doug
ps. Please include previous correspondence in the email
On 12/16/19 1:12 PM, Boris Rauchmann wrote:
>
> External Email - Use Caution
>
> Boriss-MacBook-Pro:mri boris$ mri_info N_Atlas_subcotex.mgz
>
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Boriss-MacBook-Pro:mri boris$ mri_info N_Atlas_subcotex.mgz
mghRead(/Users/boris/Desktop/MirLIND_test/1122/mri/N_Atlas_subcotex.mgz, -1):
could not open file
> Am 16.12.2019 um 19:08 schrieb Greve, Douglas N.,Ph.D.
> :
>
> mri_info
OK, now I'm really confused. Try this
mri_info N_Atlas_subcotex.mgz
On 12/14/19 3:04 AM, Boris Rauchmann wrote:
>
> External Email - Use Caution
>
> Here the results:
>
>
> pwd:
> /Users/boris/Desktop/MirLIND_test/1122/mri
>
> ls -l BN_Atlas_subcotex.mgz:
> -rwxrwxrwx 1 boris staff
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Hi experts,
We are doing the segmentation of the subfields of the hippocampal and
amygdala subfields, brainstem subestructures and thalamic nuclei. When we
used segmentHA_T1.sh and segmentThalamicNuclei.sh, 'Command not found'
appears.
On the other
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Here the results:
pwd:
/Users/boris/Desktop/MirLIND_test/1122/mri
ls -l BN_Atlas_subcotex.mgz:
-rwxrwxrwx 1 boris staff 37013 13 Aug 23:30 BN_Atlas_subcotex.mgz
Best,
Boris
> Am 13.12.2019 um 23:53 schrieb Greve, Douglas N.,Ph.D.
> :
>
> pwd
ok, this is very strange to me. Can you send the result of these two commands
pwd
and
ls -l BN_Atlas_subcotex.mgz
On 12/13/2019 2:22 AM, Boris Rauchmann wrote:
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yes to both. I always get the error ERROR: cannot find aseg...
On Fri, Dec 13, 2019 at 12:58
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yes to both. I always get the error ERROR: cannot find aseg...
On Fri, Dec 13, 2019 at 12:58 AM Greve, Douglas N.,Ph.D. <
dgr...@mgh.harvard.edu> wrote:
> Are you running this from 1122/mri and is BN_Atlas_subcotex.mgz in that
> folder?
>
> On
Are you running this from 1122/mri and is BN_Atlas_subcotex.mgz in that
folder?
On 12/12/19 12:57 PM, Boris Rauchmann wrote:
>
> External Email - Use Caution
>
> My-Computer:~ boris$ mri_aparc2aseg --s 1122 --volmask --aseg
> BN_Atlas_subcotex.mgz --o aparc+BN_Atlas_subcotex.mgz
>
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