[Freesurfer] editing labels in tksurfer

2010-07-07 Thread Keefe, Helen L
Hi Everyone, I remember a post in March when Allison referred someone to this page: https://surfer.nmr.mgh.harvard.edu/fswiki/tksurfer_labeledit and I think this will be really helpful for me if I can figure out how to make it work. I have a scan with corpus callosum bleeding into the caudalant

Re: [Freesurfer] Editing labels - How to get the altered structures volumes?

2009-09-15 Thread Douglas N Greve
Easiest to save the annotation under a different name, then run mris_anatomical_stats -mgz -f stats/lh.new.aparc.stats -b -a label/lh.new.aparc.annot subjectname doug Amorim, Edilberto wrote: > Dear freesurfers, > > > Foremost, I want to thank all the fellows freesurfeers that help us out i

[Freesurfer] Editing labels - How to get the altered structures volumes?

2009-09-15 Thread Amorim, Edilberto
Dear freesurfers, Foremost, I want to thank all the fellows freesurfeers that help us out in the mailing list. This is an amazing support. I'm a beginner working with FreeSurfer - your help is very appreciated. I've also searched in the e-mail list archives, but did not find the answer to my

Re: [Freesurfer] editing labels

2007-08-06 Thread Kevin Teich
Hi Sarah, When you save the label, is there any output on the shell? Can you load and edit a single label, save it out, exit tksurfer, restart it, and load the label in again, with the changes you made present in the label? On Mon, 2007-08-06 at 14:09 -0400, Sarah J Greene wrote: > Hi all, >

[Freesurfer] editing labels

2007-08-06 Thread Sarah J Greene
Hi all, I just wanted to ask about editing labels in tksurfer. I have converted my annot files to labels using mri_annotation2label, and now have all of the labels in the label directory. However when I edit the labels, and then save them using save selected label (highlighting the label and ch

RE: [Freesurfer] Editing labels

2005-08-15 Thread Fornito, Alexander
ertex numbers to label... -Original Message- From: Kevin Teich [mailto:[EMAIL PROTECTED] Sent: Fri 8/12/2005 7:56 AM To: Fornito, Alexander Cc: freesurfer@nmr.mgh.harvard.edu Subject:RE: [Freesurfer] Editing labels The internal representation of the label form

RE: [Freesurfer] Editing labels

2005-08-11 Thread Kevin Teich
nto the surface (?). -Original Message- From: Kevin Teich [mailto:[EMAIL PROTECTED] Sent: Thu 8/11/2005 5:18 AM To: Fornito, Alexander Cc: freesurfer@nmr.mgh.harvard.edu Subject:Re: [Freesurfer] Editing labels I've been trying to edit some labels in tkmedit and have noti

RE: [Freesurfer] Editing labels

2005-08-10 Thread Fornito, Alexander
ected onto the surface (?). -Original Message- From: Kevin Teich [mailto:[EMAIL PROTECTED] Sent: Thu 8/11/2005 5:18 AM To: Fornito, Alexander Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Editing labels > I've been trying to edit some labels i

Re: [Freesurfer] Editing labels

2005-08-10 Thread Kevin Teich
I've been trying to edit some labels in tkmedit and have noticed that if I save a label in tkmedit and then project it back onto the surface in tksurfer, it appears fragmented (ie., speckled). This happens even if I save a label that was created in tksurfer in tkmedit without even editing it (i

[Freesurfer] Editing labels

2005-08-06 Thread Fornito, Alexander
Hi, I've been trying to edit some labels in tkmedit and have noticed that if I save a label in tkmedit and then project it back onto the surface in tksurfer, it appears fragmented (ie., speckled). This happens even if I save a label that was created in tksurfer in tkmedit without even editing it