[Freesurfer] subcortical brain intensity

HI all What is mean of the subcortical intensity in the aseg.stats file? Thanks. rujing___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is

Re: [Freesurfer] how to convert fsaverage space mask into other subject original space

bfloat Last step used the mask, but its result is just tha same as that without mask. I also checked the mask file which doesnot have any problem. Thanks. All the best. Rujing Zha At 2014-04-08 23:10:35,Bruce

[Freesurfer] Fw:Re: Re: questions about ROI analysis

bfloat Last step used the mask, but its result is just tha same as that without mask. I also checked the mask file which doesnot have any problem. Thanks. All the best. Rujing Zha 转发邮件信息 发件

[Freesurfer] questions about ROI analysis

Hi FS experts and others, I have done two group thickness difference analysis based on whole brain. Now I want to do correlation analysis between specific ROI thickness and behavior score. I searched roi in the FS website, but I cannot distinguish the volume ROI and surface ROI very

[Freesurfer] freeview error {Disarmed}

. Rujing Zha Hi Bruce and others, Thanks Bruce. I had installed the centos6.5 x86_64 in my computer, and setup the freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.tar.gz, and I setup the nvidia drivers completely. Then I tried to run this command: freeview -f $SUBJECTS_DIR/fsaverage/surf

Re: [Freesurfer] Fwd: freeview error

. 2014-01-01 Rujing Zha 发件人：Ruopeng Wang rpw...@nmr.mgh.harvard.edu 发送时间：2014-01-01 00:16 主题：Re: [Freesurfer] Fwd: freeview error 收件人：rujing chacharuj...@gmail.com 抄送：charujing123charujing...@163.com,freesurferfreesurfer@nmr.mgh.harvard.edu Hi Rujing, Your hardware setup does sound a bit

[Freesurfer] freeview error

Hi Bruce and others, Thanks Bruce. I had installed the centos6.5 x86_64 in my computer, and setup the freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.tar.gz, and I setup the nvidia drivers completely. Then I tried to run this command: freeview -f

[Freesurfer] freeview error

Hi Bruce and others, Thanks Bruce. I had installed the centos6.5 x86_64 in my computer, and setup the freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.tar.gz, and I setup the nvidia drivers completely. Then I tried to run this command: freeview -f

Re: [Freesurfer] reconall error

have done is to visualize the overlay,underlay and annotation in freeview but my server cannot do that. Thanks. All the best. 2013-12-27 Rujing Zha 发件人：Bruce Fischl fis...@nmr.mgh.harvard.edu 发送时间：2013-10-31 03:58 主题：Re: [Freesurfer] reconall error 收件人：Rashmi Singhrsi...@laureateinstitute.org

Re: [Freesurfer] tksurfer visualization and -aseg option in tkmedit

Hi Gari, Thanks for your helpful prompt. I see. All the best. 2013-12-21 Rujing Zha 发件人：Garikoitz Lerma-Usabiaga gariko...@gmail.com 发送时间：2013-12-21 15:47 主题：Re: [Freesurfer] tksurfer visualization and -aseg option in tkmedit 收件人：Rujing Zhazh...@mail.ustc.edu.cn 抄送：freesurferfreesurfer

[Freesurfer] vertex-wise threshold and cluster-wise p values

. All the best. 2013-12-21 Rujing Zha School of Life Science University of Science and Technology of China E-mail: zh...@mail.ustc.edu.cn charuj...@gmail.com charujing...@163.com ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https

[Freesurfer] p value in CWP colume

Hi all, I just study group analysis tutorial and I am confused with how to find cluster-wise probability in CWP colume(i.e 0.2 in clusterno 1). Did I need to process additinoally? Thanks. All the best. 2013-12-21 Rujing Zha School of Life Science University of Science and Technology

Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR

folders. So the recon-all running normally. Thanks Doug. All the best. 2013-12-19 Rujing Zha 发件人：Douglas N Greve gr...@nmr.mgh.harvard.edu 发送时间：2013-12-19 04:48 主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR 收件人：Rujing Zhacharujing...@163.com 抄送

Re: [Freesurfer] visualizing lh.gender_age.thickness.10.mgh after mris_preproc

Hi Doug, I just found the module. All the best. 2013-12-19 Rujing Zha 发件人：Rujing Zhacharujing...@163.com 发送时间：2013-12-19 15:02 主题：Re: [Freesurfer] visualizing lh.gender_age.thickness.10.mgh after mris_preproc 收件人：Douglas N Grevegr...@nmr.mgh.harvard.edu 抄送：freesurferfreesurfer

Re: [Freesurfer] mri_glmfit error

Hi Doug and others, Thanks Doug. All the best. 2013-12-20 Rujing Zha 发件人：Douglas N Greve gr...@nmr.mgh.harvard.edu 发送时间：2013-12-20 00:11 主题：Re: [Freesurfer] mri_glmfit error 收件人：Rujing Zhacharujing...@163.com 抄送：freesurferfreesurfer@nmr.mgh.harvard.edu On 12/18/2013 11:14 PM, Rujing Zha

Re: [Freesurfer] tksurfer visualization and -aseg option in tkmedit

Thanks Doug. All the best. 2013-12-20 Rujing Zha School of Life Science University of Science and Technology of China E-mail: zh...@mail.ustc.edu.cn charuj...@gmail.com charujing...@163.com 发件人：Douglas N Greve gr...@nmr.mgh.harvard.edu 发送时间：2013-12-20 00:14 主题：Re: [Freesurfer

[Freesurfer] tcsh in groupanalysis

Hi all, I learned the tutorial in the website http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis;. At the beginning of the manu, it told me to run command in tcsh. Can I just run commands in bash shell. If so, what is the function of tcsh? Thanks. All the best. 2013-12-18

[Freesurfer] mri_glmfit error

in the attachment, and the glmfit_output is the standard output of the mri_glmfit. Thanks. All the best. 2013-12-19 Rujing Zha age_edu.fsgd Description: Binary data glmfit_output Description: Binary data lh-Diff-con-IA-Intercept-thickness.mtx Description: Binary data mri_glmfit.log

Re: [Freesurfer] design matrix and contrast in fsgdf

Hi Doug, OK, I see. Thanks Doug. All the best. 2013-12-19 Rujing Zha 发件人：Douglas N Greve gr...@nmr.mgh.harvard.edu 发送时间：2013-12-19 04:38 主题：Re: [Freesurfer] design matrix and contrast in fsgdf 收件人：Rujing Zhacharujing...@163.com 抄送：freesurferfreesurfer@nmr.mgh.harvard.edu yes On 12/17/2013

Re: [Freesurfer] tcsh in groupanalysis

Hi Doug, I see. Thanks Doug. All the best. 2013-12-19 Rujing Zha 发件人：Douglas N Greve gr...@nmr.mgh.harvard.edu 发送时间：2013-12-19 04:49 主题：Re: [Freesurfer] tcsh in groupanalysis 收件人：freesurferfreesurfer@nmr.mgh.harvard.edu 抄送： You do not, but you will need to source the proper env file

Re: [Freesurfer] mri_glmfit error

to distinguish which subject is female or male in each class if dividing all subjects into 2 classes (i.e con and IA )? Thanks in advance. All the best. 2013-12-19 Rujing Zha 发件人：Douglas N Greve gr...@nmr.mgh.harvard.edu 发送时间：2013-12-19 04:59 主题：Re: [Freesurfer] mri_glmfit error 收件人

Re: [Freesurfer] mri_glmfit error

. Is this correct? Thanks. All the best. 2013-12-19 Rujing Zha 发件人：Douglas Greve gr...@nmr.mgh.harvard.edu 发送时间：2013-12-19 11:34 主题：Re: [Freesurfer] mri_glmfit error 收件人：Rujing Zhacharujing...@163.com 抄送：freesurferfreesurfer@nmr.mgh.harvard.edu On 12/18/13 10:26 PM, Rujing Zha wrote: Hi

[Freesurfer] visualizing lh.gender_age.thickness.10.mgh after mris_preproc

Dear all, I read the tutorial http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis and I want to know how to visualize the lh.gender_age.thickness.10.mgh. Thanks. All the best. 2013-12-17 Rujing Zha___ Freesurfer mailing list

[Freesurfer] data uploaded

Hi Bruce, I uploaded the data to your server. All files can be divided into 2 subjects. And one subject has incorrect segmentation (subject), the other has a multiframe ERROR(LJH_error). Thanks. All the best. 2013-12-17 Rujing Zha___ Freesurfer

Re: [Freesurfer] design matrix and contrast in fsgdf

or not. Am I right? Thanks. All the best. 2013-12-18 Rujing Zha 发件人：Douglas N Greve gr...@nmr.mgh.harvard.edu 发送时间：2013-12-18 00:31 主题：Re: [Freesurfer] design matrix and contrast in fsgdf 收件人：freesurferfreesurfer@nmr.mgh.harvard.edu 抄送： That looks correct. The contrasts for the 2nd example

Re: [Freesurfer] visualizing lh.gender_age.thickness.10.mgh after mris_preproc

Dear Doug, Thanks Doug. In my server, I cannot visualize the file but seeing the time courese window. I want to know whether there is a limit in graphics card for visualing the inflated data. Thanks. All the best. 2013-12-18 Rujing Zha 发件人：Douglas N Greve gr...@nmr.mgh.harvard.edu 发送时间

Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR

Rujing Zha 发件人：Bruce Fischl fis...@nmr.mgh.harvard.edu 发送时间：2013-12-16 21:54 主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR 收件人：Rujing Zhacharujing...@163.com 抄送：freesurferfreesurfer@nmr.mgh.harvard.edu Hi Rujing why does the input volume have multiple

Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR

was in the 15th line of the scan.info. Thanks Bruce. All the best. 2013-12-16 Rujing Zha 发件人：Bruce Fischl fis...@nmr.mgh.harvard.edu 发送时间：2013-12-16 22:12 主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR 收件人：Rujing Zhacharujing...@163.com 抄送

Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR

Dear Bruce, Thanks Bruce. That's all right. I want to know if I e-mail to you my subject's data successfully. The subject's image had a incorrect segmentation in surfs after recon-all. Thanks in advance. All the best. 2013-12-16 Rujing Zha 发件人：Bruce Fischl fis...@nmr.mgh.harvard.edu 发送时间

Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR

Hi Bruce, Maybe 163 email has some problems. I will try my gmail to send you and Louis my data. But I donot know whether your email can get attachment size 289M? Thanks. All the best. 2013-12-16 Rujing Zha 发件人：Bruce Fischl fis...@nmr.mgh.harvard.edu 发送时间：2013-12-16 22:37 主题：Re: [Freesurfer

Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR

Hi Doug, Thanks Doug. I tried the -run 15 option, it generate a 015 folder. However unpacksdcmdir code echo ERROR message: ERROR:mri_convert child killed: segmentation violation , and the script terminated. All the best. 2013-12-17 Rujing Zha 发件人：Douglas N Greve gr

[Freesurfer] design matrix and contrast in fsgdf

Dear all, I want to design a group t-test analysis and correlation analysis for pial thickness. I have read the PPT of freesurfer.groupanalysis, and I wrote a specific design matrix and contrast for my data. However it is the first time that I design matrix in fsgdf by freesurfer. I didnot

Re: [Freesurfer] A prblem of tksufer tool

Hi Huang, I have similar question with you. In my case, I cannot visualizing inflated image by tksurfer but freeview. Looking forward to someone's help. All the best. 2013-12-14 Rujing Zha 发件人：Xiaojun.Huang lvdo...@gmail.com 发送时间：2013-12-14 20:44 主题：[Freesurfer] A prblem of tksufer tool 收件

Re: [Freesurfer] segmentation incorrectly after recon-all

Hi Bruce, I upload the sugject lilei to your e-mail which is the segmentation incorrectly in -surfs. Thanks for your helping check it. All the best. 2013-12-14 Rujing Zha 发件人：Bruce Fischl fis...@nmr.mgh.harvard.edu 发送时间：2013-12-14 05:27 主题：Re: [Freesurfer] segmentation incorrectly after

[Freesurfer] after editing pial boundary in tkmedit

Hi Doug and Bruce, I have run recon-all -autorecon-pial -s my_subject after editing the pial by tkmedit. I donot know wether -autorecon-pial option running the process stages 24-31. So I want to know wether I need run -autorecon3 option as I run -autorecon-pial not -autorecon2-pial previously.

Re: [Freesurfer] after PialEdit_tktools

Dear all, Can I just type recon-all -autorecon-pial -autorecon3 -s subjects after editing the pial by PialEdit_tktools? All the best 2013-12-10 Rujing Zha School of Life Science University of Science and Technology of China E-mail: zh...@mail.ustc.edu.cn charuj...@gmail.com charujing...@163

Re: [Freesurfer] after PialEdit_tktools

should use? Thanks. All the best. 2013-12-10 Rujing Zha 发件人：Bruce Fischl fis...@nmr.mgh.harvard.edu 发送时间：2013-12-10 21:17 主题：Re: [Freesurfer] after PialEdit_tktools 收件人：Rujing Zhazh...@mail.ustc.edu.cn 抄送：freesurferfreesurfer@nmr.mgh.harvard.edu Hi Rujing, yes, you should run -autorecon2

Re: [Freesurfer] after PialEdit_tktools

Dear Bruce, Thanks. I see. All the best. 2013-12-10 Rujing Zha 发件人：Bruce Fischl fis...@nmr.mgh.harvard.edu 发送时间：2013-12-10 21:29 主题：Re: [Freesurfer] after PialEdit_tktools 收件人：Rujing Zhacharujing...@163.com 抄送：freesurferfreesurfer@nmr.mgh.harvard.edu sorry, looking at the script, I think

[Freesurfer] part of GM missing

Dear all, In tkmedit brainmask.mgz -surfs, there are a bit of GM part missing. I want to know how to paint the voxels to lable it as GM. And then run recon-all in a specific style to reconstruct the surfs. Thanks. All the best. 2013-12-10 Rujing Zha School of Life Science University

Re: [Freesurfer] part of GM missing

Dear all, What I mean is the boundary of pial is incorrect when I check that by this tkmedit subject brainmask.mgz -surfs I want to know how to change the boundary of the pial. Thanks. All the best. 2013-12-11 Rujing Zha 发件人：Rujing Zha zh...@mail.ustc.edu.cn 发送时间：2013-12-10 22:51 主题

[Freesurfer] after PialEdit_tktools

. 2013-12-10 Rujing Zha School of Life Science University of Science and Technology of China E-mail: zh...@mail.ustc.edu.cn charuj...@gmail.com charujing...@163.com ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https

Re: [Freesurfer] R: Re: R: Re: R: Re: Linear regression

Dear Stefano, OK, I see. Thanks for your help. All the best. 2013-12-06 Rujing Zha 发件人：std...@virgilio.it 发送时间：2013-12-05 22:34 主题：R: Re: [Freesurfer] R: Re: R: Re: Linear regression 收件人：charujing123charujing...@163.com,freesurferfreesurfer@nmr.mgh.harvard.edu 抄送： Dear Rujing, After

Re: [Freesurfer] R: Re: R: Re: Linear regression

-05 Rujing Zha 发件人：std...@virgilio.it 发送时间：2013-12-05 02:06 主题：[Freesurfer] R: Re: R: Re: Linear regression 收件人：grevegr...@nmr.mgh.harvard.edu,freesurferfreesurfer@nmr.mgh.harvard.edu 抄送： Dear Douglas, thank you very much for you kind reply. In the paper I have 3 groups (2 diseases and 1

[Freesurfer] view inflated surfer by tksurfer

Dear all, After recon-all, I want to view the inflated volume by tksurfer subject rh inflated , but there is nothing in Display Window. I checked the file does exist in the surf directory. That is why? Thanks. All the best. 2013-12-03 Rujing

Re: [Freesurfer] delete skull part in GM by tkmedit

Dear Gabriel, I read the PialEdits_tktools, but I want to know whether it will determine surrounding voxels belonging to skull regions based on the voxels I have signed by brush? If it does, that is what I need. Thanks. All the best. 2013-12-03 Rujing Zha 发件人：Gabriel Gonzalez Escamilla

Re: [Freesurfer] delete skull part in GM by tkmedit

will generate a beautiful result. Thanks. All the best. 2013-12-03 Rujing Zha 发件人：Bruce Fischl fis...@nmr.mgh.harvard.edu 发送时间：2013-12-03 21:25 主题：Re: [Freesurfer] delete skull part in GM by tkmedit 收件人：Rujing Zhacharujing...@163.com 抄送：freesurferfreesurfer@nmr.mgh.harvard.edu Hi Rujing why do

Re: [Freesurfer] view inflated surfer by tksurfer

Dear Bruce, I should have hit mris_info. My server has 24 CPUs and 64G RAM. I tried the redraw key, but there was a little bit gray scale image. Thanks in advance. All the best. 2013-12-03 Rujing Zha 发件人：Bruce Fischl fis...@nmr.mgh.harvard.edu 发送时间：2013-12-03 22:10 主题：Re: [Freesurfer] view

Re: [Freesurfer] recon-all strip skull and neck by brain volume mask

Dear Louis, Thanks for your helpful suggestions. I will try. All the best. 2013-12-04 Rujing Zha 发件人：Louis Nicholas Vinke vi...@nmr.mgh.harvard.edu 发送时间：2013-12-03 23:13 主题：Re: Re: [Freesurfer] recon-all strip skull and neck by brain volume mask 收件人：Rujing Zhacharujing...@163.com 抄送

[Freesurfer] recon-all strip skull and neck by brain volume mask

Dear all, Part of subjects 3d images cannot be stripped skull and neck properly in recon-all default. I have got the brain volume mask, how I can using the existing proper mask to help strip skull in recon-all and next workflow? Thanks.Any reply will be appreciated. All the best. 2013-12-02

Re: [Freesurfer] viewing slices dynamically by tkmedit

one by one in a volume automatically; the automatically view will halt if I press a button/key again or other button/key. Thanks in advance. All the best. 2013-12-03 Rujing Zha 发件人：Louis Nicholas Vinke vi...@nmr.mgh.harvard.edu 发送时间：2013-12-03 03:50 主题：Re: [Freesurfer] viewing slices

Re: [Freesurfer] recon-all strip skull and neck by brain volume mask

brainmask.mgz will not influence the GM thickness analysis? Thanks in advance. All the best. 2013-12-03 Rujing Zha 发件人：Louis Nicholas Vinke vi...@nmr.mgh.harvard.edu 发送时间：2013-12-03 03:58 主题：Re: [Freesurfer] recon-all strip skull and neck by brain volume mask 收件人：Rujing Zhacharujing...@163.com 抄送

[Freesurfer] delete skull part in GM by tkmedit

Dear all, I have read the troubleshooting in the website http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/ControlPoints_tktools. I want to know if thereis a similar method to remove skull part in GM? I donot want to use -gcut and watershed option. I think control point method is better than

[Freesurfer] viewing slices dynamically by tkmedit

Dear all, I want to see the slices as a shape of movie in tkmedit. Do anyone can tell me how to do it? Thanks. All the best. 2013-11-30 Rujing Zha___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] nii format input for recon-all

Dear all, I have done the recon-all for DICOM format input of all subjects. Part of subjects extracted brain volume not very perfectly. I want to use brain volumes nifti format which have strip the skull and neck well. My question is how to use the brain volume in nii format to segment and next

Re: [Freesurfer] Cortical thickness/surface area in volume-defined ROIs

Dear Anita, Would you please tell me where I can find Cortical Thickness of a volume-defined ROI? Thanks, All the best. 2013-11-29 Rujing Zha 发件人：Anita van Loenhoud acvanloenh...@gmail.com 发送时间：2013-11-29 21:51 主题：[Freesurfer] Cortical thickness/surface area in volume-defined ROIs 收件人

Re: [Freesurfer] Cortical thickness/surface area in volume-defined ROIs

Dear, I get it. Thanks. All the best. 2013-11-29 Rujing Zha 发件人：Anita van Loenhoud acvanloenh...@gmail.com 发送时间：2013-11-29 22:18 主题：Re: [Freesurfer] Cortical thickness/surface area in volume-defined ROIs 收件人：freesurferfreesurfer@nmr.mgh.harvard.edu 抄送： Hi Rujing Zha, Click this link

[Freesurfer] how to decide objectively whether I can use the segmented data of one subkects to analyze cortex thickness between 2 groups

Dear freesurfer experts, I met a question about how to decide objectively whether I can use the segmented data of one subkects to analyze cortex thickness between 2 groups. Thanks. All the best. 2013-11-25 Rujing Zha___ Freesurfer mailing list

Re: [Freesurfer] how to decide objectively whether I can use the segmented data of one subkects to analyze cortex thickness between 2 groups

data I can use in further analysis. That is to say, I donot know whether 3d structure of subjects is appropriate in further cortex thickness analysis. Thanks, All the best. 2013-11-25 Rujing Zha 发件人：Bruce Fischl fis...@nmr.mgh.harvard.edu 发送时间：2013-11-25 22:23 主题：Re: [Freesurfer] how

Re: [Freesurfer] how to decide objectively whether I can use the segmented data of one subkects to analyze cortex thickness between 2 groups

Dear professor Bruce, Thanks for your precious reply. I will try. All the best. 2013-11-26 Rujing Zha 发件人：Bruce Fischl fis...@nmr.mgh.harvard.edu 发送时间：2013-11-25 23:20 主题：Re: [Freesurfer] how to decide objectively whether I can use the segmented data of one subkects to analyze cortex

Re: [Freesurfer] recon-all Process Flow

Dear Bruce, Thanks for your precious promt. All the best. 2013-11-22 Rujing Zha 发件人：Bruce Fischl fis...@nmr.mgh.harvard.edu 发送时间：2013-11-21 22:42 主题：Re: [Freesurfer] recon-all Process Flow 收件人：Rujing Zhacharujing...@163.com 抄送：freesurferfreesurfer@nmr.mgh.harvard.edu Hi Rujing sure, you

Re: [Freesurfer] recon-all -s subjects -all unexpected termination

Dear professor Bruce, Thanks for your precious prompt. I will try it. All the best. Rujing Zha 发件人：Bruce Fischl fis...@nmr.mgh.harvard.edu 发送时间：2013-11-21 21:39 主题：Re: [Freesurfer] recon-all -s subjects -all unexpected termination 收件人：Rujing Zhacharujing...@163.com 抄送：freesurferfreesurfer

[Freesurfer] recon-all Process Flow

the best. 2013-11-21 Rujing Zha 发件人：Rujing Zhacharujing...@163.com 发送时间：2013-11-21 22:30 主题：Re: [Freesurfer] recon-all -s subjects -all unexpected termination 收件人：freesurferfreesurfer@nmr.mgh.harvard.edu 抄送： Dear professor Bruce, Thanks for your precious prompt. I will try it. All the best

[Freesurfer] recon-all -s subjects -all unexpected termination

Dear all, I have run recon-all for some subjects,but this code is unexpected terminated before it normally end. Can I run the code agian directly without deleting some outputs obtained from recon-all? That is to say, part of recon-all outputs do exist(as I have run recon-all previously), then

[Freesurfer] how to obtain subjects cortical thickness and then analyze unpair t-test

Dear all, Ater recon-all,which image can I select to group t-test? And do they need process in advance? Thanks very much. All the best. 2013-11-19 Rujing Zha___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] how to obtain subjects cortical thickness and then analyze unpair t-test

Dear doug, Thanks for your precious prompt, I will try. All the best. 2013-11-20 Rujing Zha 发件人：Douglas N Greve gr...@nmr.mgh.harvard.edu 发送时间：2013-11-20 00:20 主题：Re: [Freesurfer] how to obtain subjects cortical thickness and then analyze unpair t-test 收件人：freesurferfreesurfer

[Freesurfer] freesurfer5.3 version In CentOS5

Dear all, In CentOS5,which freesurfer5.3 version(centos4 or centos6?) can be compatible? Thanks! All the best. 2013-11-15 Rujing Zha___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] freesurfer-Virtualbox-linux-x86-stable-pub-v5.3-full.vdi.gz doesnot have mri_strip_skull codes

Dear FreeSurfer Users, I downloaded FreeSurfer latest version in this website:ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0/freesurfer-Virtualbox-linux-x86-stable-pub-v5.3-full.vdi.gz. I want to strip 3d structure skull by mri_strp_skull,but this package does not have this